Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003791

Physical Location & Seq

Genomic Coordinates Forward (+)

77278990 .. 77282218

Gene Structure 3229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021689

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2919 bp

ATGTGGTCGTCGGAGAATGAGAACAAAATCGTAATGCGCGACGTCACCAACGCCGGCTTGGTCGTCAGCCACCATATTGACCGGGAATTGGCCTCTCAGCCCAGAGAGCTTCCACCTCTGGCTGAAGTGGTGGGTTCTTGGGATTTGCCTCAGAAGCTTCTTGAAAGATACAATGAAAATGGTGGTGAGGAAAGAGAAGGCACCACATTGTGTGGAATATTCCCACAAATTCATAGGGCATGGGCTTCAATAGACAGCTCCTTGTTTCTTTGGGGGTTCGATGGCCACTATTTTCAAGAATACAAGGGAAAGGGCGAAGCAACTATTTGTGCCGTTGGACTTTGCAAACCAAAAGCCAACGTTTTCAATGAAGCTATTCGGTATGTTTTGGAATTAGAAATGCCTGATGAGTTGATTCTGGTAGCCAGTGACAATGGTCGGATATTCATGGCGGGGAGGGATGGCCACATTTATGAGCTGAAGTATACAAAGTGGCGGCGGCAGTGTTGGAAGGTTTGTGTGAGTAGTGCTGGTTTGGGAGGTGTTATTTCAAGATGGGTAGTGCCGGCACATGTTTTTAAGTTTGGGGCTGTTGACCCAGTTGTAGATATGGTTTTCGATAATGAGAGAAACATCTTGTATGCAAGAACAGCAGCAATGAAGATTCAGGTTTATGATGCTCATGGGGGATTGAAGAAAGTGGCAGAAGAGAAGAATCTAATCAATAATCGAAGGACAACGAAGACATCAATAGTTTGCATGGCACCATTGTCTACCATGGAGTCTAAGTCTCTACACCTTGCTGCTGTTTTGTCAGACGGAAGAAGAATGTACTTTACCACTTCCTCTGGATTTAGTAAAAAACATAATAGACCTAGTTGTTTGAGAGTCGTGACAACTAGGCCTGCTCCTACAGACGTGGTTGATGCGGAGCATTTTAACTCTGCTGGAACTCTAATTCTTTCGGATTCATCAACTAGGCCTTCTCTTGTTATAGTAAACCGCGATTGGAGCAAACAACCAGCTGCAGGGCCAAGCATTTTGGGGACAAGTACAAGGAGTTGTTCTCTGGTTCAAAAAGCGGAGATTGTCGAGGAGGCTGAGCCTGATTTGTCGGCTGCACATGAAGGGCTATGTTTGTGCTCGGCAAGGCTGCTTTTACCTCTATGGGAACTTCCTTTTGTGGTGGAAAAAGGCGGTTCAGTCATGTGCAGACTATCTCTTGAGGCAATGCAGGTGCTACAAAAAAAGATTAGTTTTTTGGAGAATTTTCTGTGGTTGAGGAGGAAGCAAAGGAGGGGCCTTTACGGCCGTGTTACTGGTCTTGGGTACTTGACTGGTTATAGAGACGAATCAGAATATGATGGCAGCTGGTCTAATAACAGGATGAGATTATTTAGTGATGCAGAGCTTGCAGCCATGGAGGTTTGGGCAATGGAATGTATGAGACAGTTGCTAATTAGATCGAGTGAAGCTCTAGTCCTGCTCCAACTTCTTTCGCAGCAAGGTCTAATCACTTGCTTGGCTAAGGACTTGGATGCTAATCTGCAGCAGGTATTAGTTCAATTGACTTTTCATCAGTTAGTTTGTTCCAAGGAGGGTAACCACCTTGCTACAAGGCTCATATCTGGTCTGATAAAGTATTATACTGATCAAGGCAAGGGGACAGTACATAAAGTTAGTGCAGTACTGGAGGAAGGTTGTCCAAGCTATTACAAGGAGTCTGATCGCAAGTATTATCTAGCTATGGATTGTCTTCAGAGAGCTGTTTTAACTAAGGATGCTGAGGAGATGGAGAAACTTGCCAGAGAAGCCTACAGTTCATTAAGTAAAGTTCCAAAATCTGCTAATTTACAGGTGGTTTGCAAATGGTTTGAGGGTTTGAGGTTTTATGAAGCAGTGGTCCACTTACCTTTACAGAAGACACAAGCTCTTGACCCCAAAGGTGATGCTTTTAATAACCAAATTGATGCAGCAGTTCGAGAAGATGCAGTTGCTAAACGTGTTCAGTGTTATGAGATTATCATCAGTGCACTGCGTTCTCTAAAAGGTGTACATGTTGGTTCCTCTTCTCGGAACAATGTGTGCCAAATTGTTCAGCTTGGCATCCGATTTCCAGACAGGTTATTTCATGAGTACTTGTGCCGTGCTATGATTCATTTTGGCCTTGAAAATGAGCTGCTTGAGTTTGGAGGTCCTAATTTGGTGCCTTTACTACAAAGTGTAGCCGGTGAACCTATACAAGAGGTTCAAGCTATTTCTCCCATTGGTCATTCAGGAACACTTTTTCCAACTAAAAAAGCCAAATATTGTGAGGTTTTGGCAAGTTACTATGCCTTGAAGGGGCAGCATCGACTTGCAGCTCATGCATTGCAAAGACTGGCAGAGAGGAGCTCAACTGATTCAGAGGATGTTCCTACTCTAGATCAAAGGTGTCAATACTTAACTACGGCACTCCTACAAGCAAATGTTGCAAGTAACAGTACAGACTTAGTACAGCTGTTGGAAGGAAAGCTTGGTGTTCTCCATTTTCAGATAAAGATCAAAGCGGAACTTGAGGCTTTGCCTGGTGCATCTGAGTCTGTCCAGTGTGGAAGTGACACCAACATTGCACGAGAAAAGGCCAAAGAGGTATCACTAGACTTAAAGAGTCTAATTGATGAAGCACTTTCAAAAGGTGGCGTCGCTGAAGCTTGTTGGGTATTGAAGAGATTTGGTTCTTACGTTCATCATGGAGATATTGGAGTGGGTTTACCCTTACAGACACTGTGCCTCCACCTTGAGAAAGCTGCATTGGAAAGACTCGAATCAGGGGCTGAATCCATCGGAGATGAAGATGTGGCAAGGGCTCTTCTTGCTGCTTCTTCCAAGGGTGCAACTGAGCCTGCATTGTTAAATGCATATGATCAGTTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006998 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010256 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0017038 GO:0017056 GO:0030054 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044611 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0061024 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

973

Amino Acids

107.84

Weight (kDa)

6.6

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoporin_N	PF08801	37 - 140	1.3e-15	Nup133 N terminal like
Nucleoporin_N	PF08801	139 - 312	3.3e-25	Nup133 N terminal like
Nucleoporin_C	PF03177	372 - 860	1.2e-46	Non-repetitive/WGA-negative nucleoporin C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14850
fragaria_vesca	FvH4_4g33560 FvH4_4g33560 FvH4_4g33560
malus_domestica	MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1
prunus_persica	Prupe.1G333300_v2.0.a1
pyrus_communis	pycom13g01720 pycom16g01690
rosa_chinensis	RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061
rosa_laevigata	RLG00000005957 RLG00000021689
rosa_multiflora	Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083800 Rroxscaffold_5G00383690
rosa_rugosa	Rorug04G0344100
rosa_samantha	Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800
rosa_wichuraiana	Rw2G049490 Rw4G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1225
AatII	GACGTC	1 cut(s)	45
Acc36I	ACCTGC	2 cut(s)	1225, 1543
AccB1I	GGYRCC	3 cut(s)	200, 763, 2206
AccI	GTMKAC	2 cut(s)	485, 773
AccII	CGCG	2 cut(s)	39, 1005
AciI	CCGC	8 cut(s)	452, 496, 499, 929, 1003, 1082, 1197, 2549
AclI	AACGTT	1 cut(s)	360
AcoI	YGGCCR	3 cut(s)	283, 463, 1309
AcsI	RAATTY	2 cut(s)	228, 1267
AcuI	CTGAAG	4 cut(s)	144, 500, 1742, 2709
AcyI	GRCGYC	2 cut(s)	42, 2682
AdeI	CACNNNGTG	1 cut(s)	210
AfaI	GTAC	9 cut(s)	833, 1054, 1331, 1671, 1689, 2055, 2138, 2485, 2496
AfiI	CCNNNNNNNGG	4 cut(s)	88, 1028, 2073, 2343
AflIII	ACRYGT	3 cut(s)	571, 2002, 2056
AjiI	CACGTC	1 cut(s)	919
AjnI	CCWGG	1 cut(s)	2566
AjuI	GAANNNNNNNTTGG	4 cut(s)	2499, 2531, 2777, 2809
AloI	GAACNNNNNNTCC	2 cut(s)	2272, 2304
Alw21I	GWGCWC	3 cut(s)	1145, 2035, 2396
Alw26I	GTCTC	3 cut(s)	795, 1341, 1441
Alw44I	GTGCAC	1 cut(s)	2031
AlwNI	CAGNNNCTG	2 cut(s)	2767, 2816
ApaLI	GTGCAC	1 cut(s)	2031
ApoI	RAATTY	2 cut(s)	228, 1267
Asp700I	GAANNNNTTC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	4 cut(s)	1031, 1300, 1903, 2195
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	4 cut(s)	37, 197, 1958, 2243
AvaII	GGWCC	2 cut(s)	1903, 2195
BaeGI	GKGCMC	1 cut(s)	2035
BalI	TGGCCA	2 cut(s)	285, 465
BanI	GGYRCC	3 cut(s)	200, 763, 2206
BanII	GRGCYC	2 cut(s)	2396, 2851
BauI	CACGAG	1 cut(s)	2613
BbsI	GAAGAC	3 cut(s)	749, 1748, 1928
Bbv12I	GWGCWC	3 cut(s)	1145, 2035, 2396
BbvCI	CCTCAGC	1 cut(s)	1785
BccI	CCATC	6 cut(s)	275, 455, 549, 1358, 1786, 2831
BceAI	ACGGC	5 cut(s)	317, 1296, 1324, 2130, 2466
BciT130I	CCWGG	1 cut(s)	2568
BclI	TGATCA	2 cut(s)	1651, 2905
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	795, 1341, 1441
BfaI	CTAG	7 cut(s)	876, 900, 978, 1478, 1742, 2423, 2639
BfmI	CTRYAG	4 cut(s)	912, 1026, 1547, 1816
BfuAI	ACCTGC	2 cut(s)	1225, 1543
BglI	GCCNNNNNGGC	1 cut(s)	1308
BlpI	GCTNAGC	1 cut(s)	1101
BmcAI	AGTACT	2 cut(s)	1689, 2138
Bme1390I	CCNGG	2 cut(s)	83, 2568
Bme18I	GGWCC	2 cut(s)	1903, 2195
BmgBI	CACGTC	1 cut(s)	919
BmgT120I	GGNCC	4 cut(s)	1031, 1300, 1903, 2195
BmiI	GGNNCC	5 cut(s)	202, 765, 1301, 2065, 2208
BmrFI	CCNGG	2 cut(s)	83, 2568
BmrI	ACTGGG	1 cut(s)	593
BmuI	ACTGGG	1 cut(s)	593
BoxI	GACNNNNGTC	1 cut(s)	435
BpiI	GAAGAC	3 cut(s)	749, 1748, 1928
BplI	GAGNNNNNCTC	6 cut(s)	1051, 1083, 1459, 1491, 2378, 2410
BpmI	CTGGAG	1 cut(s)	1712
Bpu10I	CCTNAGC	2 cut(s)	1527, 1785
Bpu1102I	GCTNAGC	1 cut(s)	1101
BpuEI	CTTGAG	4 cut(s)	1244, 2204, 2576, 2801
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	3 cut(s)	1542, 2024, 2540
BsaHI	GRCGYC	2 cut(s)	42, 2682
BsaJI	CCNNGG	4 cut(s)	777, 1419, 1593, 2868
BsaXI	ACNNNNNCTCC	4 cut(s)	773, 803, 2757, 2787
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 1028, 2073, 2343
Bse118I	RCCGGY	3 cut(s)	53, 565, 2228
Bse1I	ACTGG	7 cut(s)	426, 599, 1324, 1342, 1695, 2385, 2587
Bse3DI	GCAATG	5 cut(s)	663, 1236, 1440, 2369, 2607
Bse8I	GATNNNNATC	3 cut(s)	1542, 2024, 2540
BseBI	CCWGG	1 cut(s)	2568
BseDI	CCNNGG	4 cut(s)	777, 1419, 1593, 2868
BseGI	GGATG	6 cut(s)	466, 1392, 1543, 1786, 2106, 2416
BseJI	GATNNNNATC	3 cut(s)	1542, 2024, 2540
BseLI	CCNNNNNNNGG	4 cut(s)	88, 1028, 2073, 2343
BseMI	GCAATG	5 cut(s)	663, 1236, 1440, 2369, 2607
BseMII	CTCAG	6 cut(s)	110, 164, 1092, 1776, 2568, 2871
BseNI	ACTGG	7 cut(s)	426, 599, 1324, 1342, 1695, 2385, 2587
BseRI	GAGGAG	4 cut(s)	1109, 1297, 1802, 2404
BseSI	GKGCMC	1 cut(s)	2035
BseX3I	CGGCCG	1 cut(s)	1309
BsgI	GTGCAG	3 cut(s)	1104, 1231, 1704
Bsh1236I	CGCG	2 cut(s)	39, 1005
Bsh1285I	CGRYCG	1 cut(s)	1312
BshNI	GGYRCC	3 cut(s)	200, 763, 2206
BsiEI	CGRYCG	1 cut(s)	1312
BsiHKAI	GWGCWC	3 cut(s)	1145, 2035, 2396
BsiSI	CCGG	4 cut(s)	54, 82, 566, 2229
BslFI	GGGAC	2 cut(s)	1060, 1678
BslI	CCNNNNNNNGG	4 cut(s)	88, 1028, 2073, 2343
BsmAI	GTCTC	3 cut(s)	795, 1341, 1441
BsmBI	CGTCTC	1 cut(s)	1341
BsmFI	GGGAC	2 cut(s)	1060, 1678
Bsp1286I	GDGCHC	4 cut(s)	1145, 2035, 2396, 2851
Bsp1407I	TGTACA	1 cut(s)	2053
Bsp143I	GATC	6 cut(s)	1463, 1651, 1726, 2425, 2541, 2905
Bsp1720I	GCTNAGC	1 cut(s)	1101
Bsp19I	CCATGG	2 cut(s)	777, 1419
BspACI	CCGC	8 cut(s)	452, 496, 499, 929, 1003, 1082, 1197, 2549
BspCNI	CTCAG	6 cut(s)	109, 163, 1093, 1777, 2569, 2872
BspFNI	CGCG	2 cut(s)	39, 1005
BspHI	TCATGA	1 cut(s)	2131
BspLI	GGNNCC	5 cut(s)	202, 765, 1301, 2065, 2208
BspMAI	CTGCAG	2 cut(s)	1030, 1551
BspMI	ACCTGC	2 cut(s)	1225, 1543
BspQI	GCTCTTC	1 cut(s)	2856
BspT107I	GGYRCC	3 cut(s)	200, 763, 2206
BsrDI	GCAATG	5 cut(s)	663, 1236, 1440, 2369, 2607
BsrFI	RCCGGY	3 cut(s)	53, 565, 2228
BsrGI	TGTACA	1 cut(s)	2053
BsrI	ACTGG	7 cut(s)	426, 599, 1324, 1342, 1695, 2385, 2587
BssAI	RCCGGY	3 cut(s)	53, 565, 2228
BssECI	CCNNGG	4 cut(s)	777, 1419, 1593, 2868
BssMI	GATC	6 cut(s)	1463, 1651, 1726, 2425, 2541, 2905
BssNAI	GTATAC	1 cut(s)	486
BssNI	GRCGYC	2 cut(s)	42, 2682
BssSI	CACGAG	1 cut(s)	2613
BssT1I	CCWWGG	4 cut(s)	777, 1419, 1593, 2868
Bst1107I	GTATAC	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	2613
Bst2UI	CCWGG	1 cut(s)	2568
Bst4CI	ACNGT	5 cut(s)	1452, 1669, 1820, 2483, 2769
Bst6I	CTCTTC	4 cut(s)	702, 2074, 2702, 2856
BstACI	GRCGYC	2 cut(s)	42, 2682
BstAPI	GCANNNNNTGC	3 cut(s)	1412, 2366, 2471
BstAUI	TGTACA	1 cut(s)	2053
BstC8I	GCNNGC	5 cut(s)	55, 567, 906, 1413, 2886
BstDSI	CCRYGG	2 cut(s)	777, 1419
BstEII	GGTNACC	1 cut(s)	1601
BstF5I	GGATG	6 cut(s)	466, 1392, 1543, 1786, 2106, 2416
BstFNI	CGCG	2 cut(s)	39, 1005
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	6 cut(s)	1466, 1654, 1729, 2428, 2544, 2908
BstMAI	GTCTC	3 cut(s)	795, 1341, 1441
BstMBI	GATC	6 cut(s)	1463, 1651, 1726, 2425, 2541, 2905
BstMCI	CGRYCG	1 cut(s)	1312
BstNI	CCWGG	1 cut(s)	2568
BstNSI	RCATGY	2 cut(s)	575, 2060
BstPAI	GACNNNNGTC	1 cut(s)	435
BstPI	GGTNACC	1 cut(s)	1601
BstSCI	CCNGG	2 cut(s)	81, 2566
BstSFI	CTRYAG	4 cut(s)	912, 1026, 1547, 1816
BstSLI	GKGCMC	1 cut(s)	2035
BstUI	CGCG	2 cut(s)	39, 1005
BstV2I	GAAGAC	3 cut(s)	749, 1748, 1928
BstZ17I	GTATAC	1 cut(s)	486
BstZI	CGGCCG	1 cut(s)	1309
BtgI	CCRYGG	2 cut(s)	777, 1419
BtrI	CACGTC	1 cut(s)	919
BtsCI	GGATG	6 cut(s)	466, 1392, 1543, 1786, 2106, 2416
BtsI	GCAGTG	3 cut(s)	509, 1905, 2033
BtsIMutI	CAGTG	8 cut(s)	433, 509, 1905, 2015, 2033, 2035, 2594, 2765
BveI	ACCTGC	2 cut(s)	1225, 1543
Cac8I	GCNNGC	5 cut(s)	55, 567, 906, 1413, 2886
CaiI	CAGNNNCTG	2 cut(s)	2767, 2816
CciI	TCATGA	1 cut(s)	2131
CfoI	GCGC	1 cut(s)	39
Cfr10I	RCCGGY	3 cut(s)	53, 565, 2228
Cfr13I	GGNCC	4 cut(s)	1031, 1300, 1903, 2195
CseI	GACGC	1 cut(s)	2671
Csp6I	GTAC	9 cut(s)	832, 1053, 1330, 1670, 1688, 2054, 2137, 2484, 2495
CviQI	GTAC	9 cut(s)	832, 1053, 1330, 1670, 1688, 2054, 2137, 2484, 2495
DpnI	GATC	6 cut(s)	1465, 1653, 1728, 2427, 2543, 2907
DpnII	GATC	6 cut(s)	1463, 1651, 1726, 2425, 2541, 2905
DraIII	CACNNNGTG	1 cut(s)	210
EaeI	YGGCCR	3 cut(s)	283, 463, 1309
EagI	CGGCCG	1 cut(s)	1309
Eam1104I	CTCTTC	4 cut(s)	702, 2074, 2702, 2856
EarI	CTCTTC	4 cut(s)	702, 2074, 2702, 2856
Ecl136II	GAGCTC	1 cut(s)	2394
EclXI	CGGCCG	1 cut(s)	1309
Eco130I	CCWWGG	4 cut(s)	777, 1419, 1593, 2868
Eco147I	AGGCCT	2 cut(s)	904, 982
Eco24I	GRGCYC	2 cut(s)	2396, 2851
Eco47I	GGWCC	2 cut(s)	1903, 2195
Eco52I	CGGCCG	1 cut(s)	1309
Eco53kI	GAGCTC	1 cut(s)	2394
Eco57I	CTGAAG	4 cut(s)	144, 500, 1742, 2709
Eco91I	GGTNACC	1 cut(s)	1601
EcoICRI	GAGCTC	1 cut(s)	2394
EcoO109I	RGGNCCY	2 cut(s)	1300, 2195
EcoO65I	GGTNACC	1 cut(s)	1601
EcoRII	CCWGG	1 cut(s)	2566
EcoT14I	CCWWGG	4 cut(s)	777, 1419, 1593, 2868
EcoT22I	ATGCAT	2 cut(s)	2371, 2902
EcoT38I	GRGCYC	2 cut(s)	2396, 2851
ErhI	CCWWGG	4 cut(s)	777, 1419, 1593, 2868
Esp3I	CGTCTC	1 cut(s)	1341
FalI	AAGNNNNNCTT	4 cut(s)	2499, 2531, 2538, 2570
FaqI	GGGAC	2 cut(s)	1060, 1678
FauI	CCCGC	1 cut(s)	445
FauNDI	CATATG	1 cut(s)	2902
FbaI	TGATCA	2 cut(s)	1651, 2905
FblI	GTMKAC	2 cut(s)	485, 773
FokI	GGATG	6 cut(s)	473, 1399, 1550, 1793, 2093, 2423
FriOI	GRGCYC	2 cut(s)	2396, 2851
FspBI	CTAG	7 cut(s)	876, 900, 978, 1478, 1742, 2423, 2639
GlaI	GCGC	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	1712
HapII	CCGG	4 cut(s)	54, 82, 566, 2229
HgaI	GACGC	1 cut(s)	2671
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	2 cut(s)	42, 2682
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	3 cut(s)	155, 2513, 2691
HpaII	CCGG	4 cut(s)	54, 82, 566, 2229
HphI	GGTGA	4 cut(s)	37, 197, 1958, 2243
Hpy166II	GTNNAC	9 cut(s)	486, 595, 774, 1000, 1906, 2033, 2054, 2234, 2753
Hpy8I	GTNNAC	9 cut(s)	486, 595, 774, 1000, 1906, 2033, 2054, 2234, 2753
Hpy99I	CGWCG	3 cut(s)	13, 44, 2687
HpyAV	CCTTC	8 cut(s)	191, 505, 726, 993, 1121, 1691, 2335, 2501
HpyCH4III	ACNGT	5 cut(s)	1452, 1669, 1820, 2483, 2769
HpyCH4IV	ACGT	5 cut(s)	42, 360, 918, 2002, 2724
HpySE526I	ACGT	5 cut(s)	42, 360, 918, 2002, 2724
Hsp92I	GRCGYC	2 cut(s)	42, 2682
HspAI	GCGC	1 cut(s)	37
KroI	GCCGGC	2 cut(s)	53, 565
KroNI	GCCGGC	2 cut(s)	55, 567
Ksp22I	TGATCA	2 cut(s)	1651, 2905
Kzo9I	GATC	6 cut(s)	1463, 1651, 1726, 2425, 2541, 2905
LguI	GCTCTTC	1 cut(s)	2856
LmnI	GCTCC	6 cut(s)	263, 913, 931, 1011, 1491, 2391
MaeI	CTAG	7 cut(s)	876, 900, 978, 1478, 1742, 2423, 2639
MaeII	ACGT	5 cut(s)	42, 360, 918, 2002, 2724
MaeIII	GTNAC	8 cut(s)	43, 428, 892, 1315, 1601, 2327, 2477, 2597
MalI	GATC	6 cut(s)	1465, 1653, 1728, 2427, 2543, 2907
MboI	GATC	6 cut(s)	1463, 1651, 1726, 2425, 2541, 2905
MfeI	CAATTG	1 cut(s)	1565
MhlI	GDGCHC	4 cut(s)	1145, 2035, 2396, 2851
MlsI	TGGCCA	2 cut(s)	285, 465
MluNI	TGGCCA	2 cut(s)	285, 465
MlyI	GAGTC	6 cut(s)	791, 897, 1730, 2588, 2659, 2796
MmeI	TCCRAC	6 cut(s)	316, 419, 488, 1513, 2315, 2484
Mox20I	TGGCCA	2 cut(s)	285, 465
Mph1103I	ATGCAT	2 cut(s)	2371, 2902
MroNI	GCCGGC	2 cut(s)	53, 565
MroXI	GAANNNNTTC	1 cut(s)	375
MscI	TGGCCA	2 cut(s)	285, 465
MseI	TTAA	8 cut(s)	579, 939, 1772, 1826, 1956, 2444, 2645, 2894
MslI	CAYNNNNRTG	1 cut(s)	471
Msp20I	TGGCCA	2 cut(s)	285, 465
MspA1I	CMGCKG	3 cut(s)	1025, 1371, 2500
MspI	CCGG	4 cut(s)	54, 82, 566, 2229
MspR9I	CCNGG	2 cut(s)	83, 2568
MunI	CAATTG	1 cut(s)	1565
MvaI	CCWGG	1 cut(s)	2568
MvnI	CGCG	2 cut(s)	39, 1005
NaeI	GCCGGC	2 cut(s)	55, 567
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	2 cut(s)	777, 1419
NdeI	CATATG	1 cut(s)	2902
NdeII	GATC	6 cut(s)	1463, 1651, 1726, 2425, 2541, 2905
NgoMIV	GCCGGC	2 cut(s)	53, 565
NlaIV	GGNNCC	5 cut(s)	202, 765, 1301, 2065, 2208
NmeAIII	GCCGAG	1 cut(s)	1124
NmuCI	GTSAC	4 cut(s)	43, 428, 892, 2597
NsiI	ATGCAT	2 cut(s)	2371, 2902
NspI	RCATGY	2 cut(s)	575, 2060
PagI	TCATGA	1 cut(s)	2131
PaqCI	CACCTGC	1 cut(s)	1225
PceI	AGGCCT	2 cut(s)	904, 982
PciI	ACATGT	2 cut(s)	571, 2056
PciSI	GCTCTTC	1 cut(s)	2856
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdiI	GCCGGC	2 cut(s)	55, 567
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	9 cut(s)	415, 664, 715, 968, 1352, 2155, 2402, 2807, 2819
PleI	GAGTC	6 cut(s)	790, 896, 1729, 2587, 2658, 2796
PpsI	GAGTC	6 cut(s)	790, 896, 1729, 2587, 2658, 2796
PpuMI	RGGWCCY	1 cut(s)	2195
PscI	ACATGT	2 cut(s)	571, 2056
PshAI	GACNNNNGTC	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	2396
Psp1406I	AACGTT	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	2195
Psp6I	CCWGG	1 cut(s)	2566
PspEI	GGTNACC	1 cut(s)	1601
PspGI	CCWGG	1 cut(s)	2566
PspN4I	GGNNCC	5 cut(s)	202, 765, 1301, 2065, 2208
PspPI	GGNCC	4 cut(s)	1031, 1300, 1903, 2195
PspPPI	RGGWCCY	1 cut(s)	2195
PstI	CTGCAG	2 cut(s)	1030, 1551
PstNI	CAGNNNCTG	2 cut(s)	2767, 2816
PvuII	CAGCTG	3 cut(s)	1025, 1371, 2500
RsaI	GTAC	9 cut(s)	833, 1054, 1331, 1671, 1689, 2055, 2138, 2485, 2496
RsaNI	GTAC	9 cut(s)	832, 1053, 1330, 1670, 1688, 2054, 2137, 2484, 2495
RseI	CAYNNNNRTG	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	2396
SapI	GCTCTTC	1 cut(s)	2856
SaqAI	TTAA	8 cut(s)	579, 939, 1772, 1826, 1956, 2444, 2645, 2894
Sau3AI	GATC	6 cut(s)	1463, 1651, 1726, 2425, 2541, 2905
Sau96I	GGNCC	4 cut(s)	1031, 1300, 1903, 2195
ScaI	AGTACT	2 cut(s)	1689, 2138
SchI	GAGTC	6 cut(s)	791, 897, 1730, 2588, 2659, 2796
ScrFI	CCNGG	2 cut(s)	83, 2568
SduI	GDGCHC	4 cut(s)	1145, 2035, 2396, 2851
SfcI	CTRYAG	4 cut(s)	912, 1026, 1547, 1816
SfiI	GGCCNNNNNGGCC	1 cut(s)	1308
SinI	GGWCC	2 cut(s)	1903, 2195
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	4 cut(s)	1223, 2183, 2555, 2780
SmoI	CTYRAG	4 cut(s)	1223, 2183, 2555, 2780
SseBI	AGGCCT	2 cut(s)	904, 982
SsiI	CCGC	8 cut(s)	452, 496, 499, 929, 1003, 1082, 1197, 2549
SspI	AATATT	2 cut(s)	219, 2309
SspMI	CTAG	7 cut(s)	876, 900, 978, 1478, 1742, 2423, 2639
SstI	GAGCTC	1 cut(s)	2396
StuI	AGGCCT	2 cut(s)	904, 982
StyD4I	CCNGG	2 cut(s)	81, 2566
StyI	CCWWGG	4 cut(s)	777, 1419, 1593, 2868
TaaI	ACNGT	5 cut(s)	1452, 1669, 1820, 2483, 2769
TaiI	ACGT	5 cut(s)	45, 363, 921, 2005, 2727
TaqI	TCGA	8 cut(s)	279, 618, 730, 1092, 1466, 1981, 2353, 2805
TatI	WGTACW	8 cut(s)	831, 1052, 1669, 1687, 2053, 2136, 2483, 2494
TauI	GCSGC	2 cut(s)	499, 502
TfiI	GAWTC	9 cut(s)	415, 664, 715, 968, 1352, 2155, 2402, 2807, 2819
Tru1I	TTAA	8 cut(s)	579, 939, 1772, 1826, 1956, 2444, 2645, 2894
Tru9I	TTAA	8 cut(s)	579, 939, 1772, 1826, 1956, 2444, 2645, 2894
TscAI	CASTG	8 cut(s)	433, 509, 1905, 2015, 2035, 2040, 2594, 2772
TseFI	GTSAC	4 cut(s)	43, 428, 892, 2597
Tsp45I	GTSAC	4 cut(s)	43, 428, 892, 2597
TspGWI	ACGGA	1 cut(s)	834
TspRI	CASTG	8 cut(s)	433, 509, 1905, 2015, 2035, 2040, 2594, 2772
VneI	GTGCAC	1 cut(s)	2031
VpaK11BI	GGWCC	2 cut(s)	1903, 2195
XapI	RAATTY	2 cut(s)	228, 1267
XbaI	TCTAGA	1 cut(s)	2422
XceI	RCATGY	2 cut(s)	575, 2060
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XmiI	GTMKAC	2 cut(s)	485, 773
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	7 cut(s)	876, 900, 978, 1478, 1742, 2423, 2639
ZraI	GACGTC	1 cut(s)	43
ZrmI	AGTACT	2 cut(s)	1689, 2138
Zsp2I	ATGCAT	2 cut(s)	2371, 2902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.