Rmu_sc0010966.1_g000010

Nuclear pore complex protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010966.1
Physical Location & Seq
Forward (+)
26002 .. 27845
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010966.1_g000010.1.cds

Sequence Viewer

Length: 1773 bp
atggttgatgcggagcatttttactctgctggaactctaattctttcagattcatcaactaggccttctcttgttatagtaaaccgcgattggagcaaacaaccagctgcagggccaagcattttcgggacaagtacaaggagttgttctcgtaaattatgggaacatgtatattctttgccagttaaaggagagattctttctgtagcagataaattacctcagcttgatactgcaagcactctatgttatggtggaggcgagctttctaatcaaattgtattgccaaggaagcaacttgtggttttcacttctaatgtgttacaagacttcttcaatcactacggagctggtgaggcggctgcgatgtgtttaatgccagcagctgggatagtccatccagaagttcatatcagcaaagttgttgctcagaatgcagctgaagcttttgaggaccaaaaactggttcaaaaggcagagattgttgaggaggctgagcctgatttttcagctgcacatgaagggctatgtttgtgctcggcaaggctgcttttacctctatgggaacttcctttcgtggtggaagaaggcggttcagtcatgtgcatactgtctcttgaggcaatgcaggtgctacaaaaaaagattagttctttggagaattttctgtggttgaggaggaagcaaaggaggggtctttatggccgtgttactgatcttgggtacttgactggttatagagacgaatcaaaatatgatggcagttggtctaataacaggaagagattatttagtgatgcagagcttacagccatggaggttagggcaatggaatgtatgagacagttgctaattagattgagtgaagctcaagtcctactccaacttctttcgcagcaaggtctaatcacttgcttggctaaggacttggatgctaatctgcagcaggtattagtccaattgacttttcatcagttagtttgttccgaggagggtaagcaccttgctacaaggctcatatctggtctgacaaagtattatactgatcaaggcaaggggacagtacataaaattagtgcagtactgcaggaaggttgtccaagctattacaaggagtctggtggcaagtattatctagctatggattgtcttcagagagctgttttaaataaagatgctgaggagatggagaaacttgccagagaagcctacagttgtaaagttcaaaaatctgctaatttacaggtggtttgcaaatggtttgagggtttgaggttttatgaagcagtggtccacttacctttgcagaaggcacaagctcttgaccccaaaggtgatgcttttaataaccaaattgatgcagcagttcgagaagatgcagttgctaaacgtgttcagtgtcatgagattatcatcagtgcactgcgttctctaaaaggtgtacatattggttcctcttctcggaacagacatgagtgccaaattgttcagcttggcatccgatttccagacaggttatttcatgagtacttgtgccgtgctatgattgatttcggccttgaaaatgagctgtttgagtttggaggtcctaatttggtgcctttactacaaagtgtagccggtgaacctatacaagaggttcaagctatttctcccattggtcattcaggaacactttttccaactaaaaaagccaaatattgtgaggttttggcaagttactatgccttgaaagatcggcttgcagctcatgcattgcaaagactggcatag

Protein Analysis

590

Amino Acids

65.73

Weight (kDa)

6.61

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 619
Acc36I ACCTGC 2 cut(s) 619, 937
AccB1I GGYRCC 1 cut(s) 1597
AccB7I CCANNNNNTGG 2 cut(s) 386, 463
AccII CGCG 1 cut(s) 87
AciI CCGC 4 cut(s) 11, 85, 359, 591
AcoI YGGCCR 1 cut(s) 703
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 2 cut(s) 462, 1136
AfaI GTAC 6 cut(s) 136, 725, 1065, 1083, 1443, 1529
AfiI CCNNNNNNNGG 5 cut(s) 110, 188, 386, 463, 1461
AflIII ACRYGT 2 cut(s) 166, 1390
AgsI TTSAA 6 cut(s) 337, 470, 1226, 1562, 1643, 1732
AjuI GAANNNNNNNTTGG 4 cut(s) 450, 482, 951, 983
AloI GAACNNNNNNTCC 2 cut(s) 1663, 1695
Alw21I GWGCWC 2 cut(s) 539, 1423
Alw26I GTCTC 3 cut(s) 618, 735, 835
Alw44I GTGCAC 1 cut(s) 1419
AlwNI CAGNNNCTG 1 cut(s) 386
AoxI GGCC 4 cut(s) 62, 113, 703, 1555
ApaLI GTGCAC 1 cut(s) 1419
ApoI RAATTY 1 cut(s) 661
ArsI GACNNNNNNTTYG 2 cut(s) 679, 711
AspS9I GGNCC 4 cut(s) 113, 454, 1291, 1586
AsuHPI GGTGA 3 cut(s) 365, 1346, 1634
AvaII GGWCC 3 cut(s) 454, 1291, 1586
BaeGI GKGCMC 1 cut(s) 1423
BanI GGYRCC 1 cut(s) 1597
BbsI GAAGAC 1 cut(s) 1142
Bbv12I GWGCWC 2 cut(s) 539, 1423
BbvCI CCTCAGC 2 cut(s) 222, 1179
BccI CCATC 3 cut(s) 405, 752, 1180
BceAI ACGGC 2 cut(s) 690, 1521
BclI TGATCA 1 cut(s) 1045
BcoDI GTCTC 3 cut(s) 618, 735, 835
BfaI CTAG 2 cut(s) 60, 1136
BfmI CTRYAG 5 cut(s) 108, 204, 941, 1085, 1210
BfuAI ACCTGC 2 cut(s) 619, 937
BlpI GCTNAGC 1 cut(s) 495
BmcAI AGTACT 2 cut(s) 1083, 1529
Bme18I GGWCC 3 cut(s) 454, 1291, 1586
BmgT120I GGNCC 4 cut(s) 113, 454, 1291, 1586
BmiI GGNNCC 2 cut(s) 1453, 1599
BmsI GCATC 7 cut(s) 787, 922, 1165, 1327, 1348, 1366, 1506
BpiI GAAGAC 1 cut(s) 1142
BplI GAGNNNNNCTC 4 cut(s) 133, 165, 853, 885
Bpu10I CCTNAGC 3 cut(s) 222, 921, 1179
Bpu1102I GCTNAGC 1 cut(s) 495
BpuEI CTTGAG 2 cut(s) 638, 855
BsaBI GATNNNNATC 2 cut(s) 936, 1412
BsaJI CCNNGG 3 cut(s) 287, 813, 987
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 188, 386, 463, 1461
Bse118I RCCGGY 1 cut(s) 1619
Bse1I ACTGG 4 cut(s) 182, 468, 736, 1770
Bse3DI GCAATG 3 cut(s) 630, 834, 1754
Bse8I GATNNNNATC 2 cut(s) 936, 1412
BseDI CCNNGG 3 cut(s) 287, 813, 987
BseGI GGATG 3 cut(s) 397, 937, 1497
BseJI GATNNNNATC 2 cut(s) 936, 1412
BseLI CCNNNNNNNGG 5 cut(s) 110, 188, 386, 463, 1461
BseMI GCAATG 3 cut(s) 630, 834, 1754
BseMII CTCAG 4 cut(s) 236, 443, 486, 1170
BseNI ACTGG 4 cut(s) 182, 468, 736, 1770
BseRI GAGGAG 4 cut(s) 503, 691, 1004, 1196
BseSI GKGCMC 1 cut(s) 1423
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 2 cut(s) 498, 1098
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 4 cut(s) 64, 115, 705, 1557
BshNI GGYRCC 1 cut(s) 1597
BsiHKAI GWGCWC 2 cut(s) 539, 1423
BsiSI CCGG 1 cut(s) 1620
BslFI GGGAC 2 cut(s) 142, 1072
BslI CCNNNNNNNGG 5 cut(s) 110, 188, 386, 463, 1461
BsmAI GTCTC 3 cut(s) 618, 735, 835
BsmBI CGTCTC 1 cut(s) 735
BsmFI GGGAC 2 cut(s) 142, 1072
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 4 cut(s) 64, 115, 705, 1557
Bsp1286I GDGCHC 2 cut(s) 539, 1423
Bsp1407I TGTACA 1 cut(s) 1441
Bsp143I GATC 3 cut(s) 715, 1045, 1735
Bsp1720I GCTNAGC 1 cut(s) 495
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 4 cut(s) 11, 85, 359, 591
BspANI GGCC 4 cut(s) 64, 115, 705, 1557
BspCNI CTCAG 4 cut(s) 235, 442, 487, 1171
BspFNI CGCG 1 cut(s) 87
BspHI TCATGA 2 cut(s) 1402, 1522
BspLI GGNNCC 2 cut(s) 1453, 1599
BspMAI CTGCAG 3 cut(s) 112, 945, 1089
BspMI ACCTGC 2 cut(s) 619, 937
BspT107I GGYRCC 1 cut(s) 1597
BsrDI GCAATG 3 cut(s) 630, 834, 1754
BsrFI RCCGGY 1 cut(s) 1619
BsrGI TGTACA 1 cut(s) 1441
BsrI ACTGG 4 cut(s) 182, 468, 736, 1770
BssAI RCCGGY 1 cut(s) 1619
BssECI CCNNGG 3 cut(s) 287, 813, 987
BssMI GATC 3 cut(s) 715, 1045, 1735
BssT1I CCWWGG 2 cut(s) 287, 813
Bst4CI ACNGT 4 cut(s) 612, 846, 1063, 1214
Bst6I CTCTTC 2 cut(s) 776, 1462
BstAPI GCANNNNNTGC 1 cut(s) 1751
BstAUI TGTACA 1 cut(s) 1441
BstC8I GCNNGC 4 cut(s) 238, 263, 381, 1743
BstDEI CTNAG 5 cut(s) 222, 429, 495, 921, 1179
BstDSI CCRYGG 1 cut(s) 813
BstF5I GGATG 3 cut(s) 397, 937, 1497
BstFNI CGCG 1 cut(s) 87
BstKTI GATC 3 cut(s) 718, 1048, 1738
BstMAI GTCTC 3 cut(s) 618, 735, 835
BstMBI GATC 3 cut(s) 715, 1045, 1735
BstMWI GCNNNNNNNGC 7 cut(s) 93, 292, 356, 434, 443, 1205, 1751
BstNSI RCATGY 1 cut(s) 170
BstSFI CTRYAG 5 cut(s) 108, 204, 941, 1085, 1210
BstSLI GKGCMC 1 cut(s) 1423
BstUI CGCG 1 cut(s) 87
BstV2I GAAGAC 1 cut(s) 1142
BsuRI GGCC 4 cut(s) 64, 115, 705, 1557
BtgI CCRYGG 1 cut(s) 813
BtgZI GCGATG 1 cut(s) 380
BtsCI GGATG 3 cut(s) 397, 937, 1497
BtsI GCAGTG 2 cut(s) 1293, 1421
BtsIMutI CAGTG 4 cut(s) 1293, 1403, 1421, 1423
BveI ACCTGC 2 cut(s) 619, 937
Cac8I GCNNGC 4 cut(s) 238, 263, 381, 1743
CaiI CAGNNNCTG 1 cut(s) 386
CciI TCATGA 2 cut(s) 1402, 1522
Cfr10I RCCGGY 1 cut(s) 1619
Cfr13I GGNCC 4 cut(s) 113, 454, 1291, 1586
Csp6I GTAC 6 cut(s) 135, 724, 1064, 1082, 1442, 1528
CviAII CATG 8 cut(s) 167, 518, 601, 814, 1403, 1472, 1523, 1751
CviQI GTAC 6 cut(s) 135, 724, 1064, 1082, 1442, 1528
DdeI CTNAG 5 cut(s) 222, 429, 495, 921, 1179
DpnI GATC 3 cut(s) 717, 1047, 1737
DpnII GATC 3 cut(s) 715, 1045, 1735
DraI TTTAAA 1 cut(s) 1167
EaeI YGGCCR 1 cut(s) 703
Eam1104I CTCTTC 2 cut(s) 776, 1462
EarI CTCTTC 2 cut(s) 776, 1462
Eco130I CCWWGG 2 cut(s) 287, 813
Eco147I AGGCCT 1 cut(s) 64
Eco47I GGWCC 3 cut(s) 454, 1291, 1586
Eco57I CTGAAG 2 cut(s) 462, 1136
EcoO109I RGGNCCY 1 cut(s) 1586
EcoT14I CCWWGG 2 cut(s) 287, 813
EcoT22I ATGCAT 1 cut(s) 1756
ErhI CCWWGG 2 cut(s) 287, 813
Esp3I CGTCTC 1 cut(s) 735
FaeI CATG 8 cut(s) 170, 521, 604, 817, 1406, 1475, 1526, 1754
FalI AAGNNNNNCTT 2 cut(s) 1725, 1757
FaqI GGGAC 2 cut(s) 142, 1072
FatI CATG 8 cut(s) 166, 517, 600, 813, 1402, 1471, 1522, 1750
FbaI TGATCA 1 cut(s) 1045
FokI GGATG 3 cut(s) 384, 944, 1484
FspBI CTAG 2 cut(s) 60, 1136
GsaI CCCAGC 1 cut(s) 390
HaeIII GGCC 4 cut(s) 64, 115, 705, 1557
HapII CCGG 1 cut(s) 1620
Hin1II CATG 8 cut(s) 170, 521, 604, 817, 1406, 1475, 1526, 1754
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 4 cut(s) 50, 196, 746, 1115
HpaII CCGG 1 cut(s) 1620
HphI GGTGA 3 cut(s) 365, 1346, 1634
Hpy166II GTNNAC 5 cut(s) 82, 1294, 1421, 1442, 1625
Hpy188I TCNGA 7 cut(s) 49, 432, 988, 1029, 1155, 1464, 1502
Hpy188III TCNNGA 9 cut(s) 127, 401, 617, 1322, 1370, 1403, 1508, 1523, 1668
Hpy8I GTNNAC 5 cut(s) 82, 1294, 1421, 1442, 1625
HpyAV CCTTC 5 cut(s) 75, 515, 581, 1085, 1303
HpyCH4III ACNGT 4 cut(s) 612, 846, 1063, 1214
HpyCH4IV ACGT 1 cut(s) 1390
HpyF10VI GCNNNNNNNGC 7 cut(s) 93, 292, 356, 434, 443, 1205, 1751
HpyF3I CTNAG 5 cut(s) 222, 429, 495, 921, 1179
HpySE526I ACGT 1 cut(s) 1390
Hsp92II CATG 8 cut(s) 170, 521, 604, 817, 1406, 1475, 1526, 1754
Ksp22I TGATCA 1 cut(s) 1045
Kzo9I GATC 3 cut(s) 715, 1045, 1735
LmnI GCTCC 3 cut(s) 13, 93, 347
LweI GCATC 7 cut(s) 787, 922, 1165, 1327, 1348, 1366, 1506
MaeI CTAG 2 cut(s) 60, 1136
MaeII ACGT 1 cut(s) 1390
MaeIII GTNAC 3 cut(s) 321, 709, 1718
MalI GATC 3 cut(s) 717, 1047, 1737
MboI GATC 3 cut(s) 715, 1045, 1735
MboII GAAGA 6 cut(s) 325, 596, 793, 1142, 1385, 1449
MfeI CAATTG 1 cut(s) 959
MhlI GDGCHC 2 cut(s) 539, 1423
MlyI GAGTC 1 cut(s) 1124
MmeI TCCRAC 2 cut(s) 907, 1706
Mph1103I ATGCAT 1 cut(s) 1756
MseI TTAA 4 cut(s) 186, 374, 1166, 1344
MspA1I CMGCKG 4 cut(s) 107, 386, 440, 512
MspI CCGG 1 cut(s) 1620
MunI CAATTG 1 cut(s) 959
Mva1269I GAATGC 1 cut(s) 439
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 7 cut(s) 93, 292, 356, 434, 443, 1205, 1751
NcoI CCATGG 1 cut(s) 813
NdeII GATC 3 cut(s) 715, 1045, 1735
NlaIII CATG 8 cut(s) 170, 521, 604, 817, 1406, 1475, 1526, 1754
NlaIV GGNNCC 2 cut(s) 1453, 1599
NmeAIII GCCGAG 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 1756
NspI RCATGY 1 cut(s) 170
PagI TCATGA 2 cut(s) 1402, 1522
PaqCI CACCTGC 1 cut(s) 619
PceI AGGCCT 1 cut(s) 64
PciI ACATGT 1 cut(s) 166
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 3 cut(s) 50, 196, 746
PflMI CCANNNNNTGG 2 cut(s) 386, 463
PleI GAGTC 1 cut(s) 1123
PpsI GAGTC 1 cut(s) 1123
PpuMI RGGWCCY 1 cut(s) 1586
PscI ACATGT 1 cut(s) 166
Psp5II RGGWCCY 1 cut(s) 1586
PspFI CCCAGC 1 cut(s) 386
PspN4I GGNNCC 2 cut(s) 1453, 1599
PspPI GGNCC 4 cut(s) 113, 454, 1291, 1586
PspPPI RGGWCCY 1 cut(s) 1586
PstI CTGCAG 3 cut(s) 112, 945, 1089
PstNI CAGNNNCTG 1 cut(s) 386
PvuII CAGCTG 4 cut(s) 107, 386, 440, 512
RsaI GTAC 6 cut(s) 136, 725, 1065, 1083, 1443, 1529
RsaNI GTAC 6 cut(s) 135, 724, 1064, 1082, 1442, 1528
SaqAI TTAA 4 cut(s) 186, 374, 1166, 1344
Sau3AI GATC 3 cut(s) 715, 1045, 1735
Sau96I GGNCC 4 cut(s) 113, 454, 1291, 1586
ScaI AGTACT 2 cut(s) 1083, 1529
SchI GAGTC 1 cut(s) 1124
SduI GDGCHC 2 cut(s) 539, 1423
SfaNI GCATC 7 cut(s) 787, 922, 1165, 1327, 1348, 1366, 1506
SfcI CTRYAG 5 cut(s) 108, 204, 941, 1085, 1210
SinI GGWCC 3 cut(s) 454, 1291, 1586
SmlI CTYRAG 2 cut(s) 617, 870
SmoI CTYRAG 2 cut(s) 617, 870
SseBI AGGCCT 1 cut(s) 64
SsiI CCGC 4 cut(s) 11, 85, 359, 591
SspI AATATT 1 cut(s) 1700
SspMI CTAG 2 cut(s) 60, 1136
StuI AGGCCT 1 cut(s) 64
StyI CCWWGG 2 cut(s) 287, 813
TaaI ACNGT 4 cut(s) 612, 846, 1063, 1214
TaiI ACGT 1 cut(s) 1393
TaqI TCGA 1 cut(s) 1369
TatI WGTACW 5 cut(s) 134, 1063, 1081, 1441, 1527
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 3 cut(s) 50, 196, 746
Tru1I TTAA 4 cut(s) 186, 374, 1166, 1344
Tru9I TTAA 4 cut(s) 186, 374, 1166, 1344
TscAI CASTG 4 cut(s) 1293, 1403, 1423, 1428
TspDTI ATGAA 6 cut(s) 42, 398, 534, 959, 1296, 1511
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 4 cut(s) 1293, 1403, 1423, 1428
Van91I CCANNNNNTGG 2 cut(s) 386, 463
VneI GTGCAC 1 cut(s) 1419
VpaK11BI GGWCC 3 cut(s) 454, 1291, 1586
XapI RAATTY 1 cut(s) 661
XceI RCATGY 1 cut(s) 170
XspI CTAG 2 cut(s) 60, 1136
ZrmI AGTACT 2 cut(s) 1083, 1529
Zsp2I ATGCAT 1 cut(s) 1756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.