Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003791

Physical Location & Seq

Genomic Coordinates Forward (+)

82526702 .. 82527349

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG594600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCTATACTATGCAAGCAATTCCGGTCCTAATGTTGCATATAGTAGCAGTATAAGAGAAGCTTGGACTAAAGTAGTTGATGAAGCACTTTCAAAAGGTGGCGTCACTGAAGCTTGTTGGGTATTGAAGAGATTTGGTTCTTACGTTCATCATGAAGATATTGAAGCGGGTTTACCCTTACAGACACTGTGCCTCCACCTTGAGAAAGCTGCATTGGAAAGACTGGAATCAGGGGCTGAATCCATCGGAGATGAAGATGTGGCAAGGGCTCTTCTTGCTGCTTCTTCCAAGGGTGCAACTGAGCCTGCATTGTTAAACGCATATGATCACTTATTATCAAAGAATGGTGCTGTTTCGCAATCGCCAAAGCTCAGGCTACGCCTTCTGCGATCAGTACTAGTGATACTTCATCAGTGGGCAATGTCTCTGTTTGCACACAGAATGAGTACTAGTGCTTATAGACCTTCTATTATTTTGGATGCAGCAAAAAGGTACATGTCTGAGGTGAGTGAGGTCCAAAGATTAGACCTTCCACAGATGCACCAGCAAACTGAAGCTGTTTACAGTGGCTTTCAAGAAATTGAAGAATCACTGAGACACAAGTCACCTATAAGAGTCACTGATCAGGTACTCATATCCTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006998 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010256 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0017038 GO:0017056 GO:0030054 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044611 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0061024 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

215

Amino Acids

23.89

Weight (kDa)

6.24

Isoelectric Point (pI)

67.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14850
fragaria_vesca	FvH4_4g33560 FvH4_4g33560 FvH4_4g33560
malus_domestica	MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1
prunus_persica	Prupe.1G333300_v2.0.a1
pyrus_communis	pycom13g01720 pycom16g01690
rosa_chinensis	RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061
rosa_laevigata	RLG00000005957 RLG00000021689
rosa_multiflora	Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083800 Rroxscaffold_5G00383690
rosa_rugosa	Rorug04G0344100
rosa_samantha	Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800
rosa_wichuraiana	Rw2G049490 Rw4G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	167
AcuI	CTGAAG	2 cut(s)	129, 573
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	4 cut(s)	396, 448, 494, 630
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	5 cut(s)	93, 127, 164, 575, 584
AhlI	ACTAGT	2 cut(s)	397, 449
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	5 cut(s)	62, 113, 209, 370, 557
AluI	AGCT	5 cut(s)	62, 113, 209, 370, 557
Alw26I	GTCTC	2 cut(s)	429, 589
AlwNI	CAGNNNCTG	2 cut(s)	187, 236
ApeKI	GCWGC	3 cut(s)	209, 278, 482
AspS9I	GGNCC	2 cut(s)	26, 514
AsuHPI	GGTGA	2 cut(s)	517, 597
AvaII	GGWCC	2 cut(s)	26, 514
BanII	GRGCYC	1 cut(s)	271
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
BbvI	GCAGC	3 cut(s)	196, 265, 494
BccI	CCATC	1 cut(s)	251
BclI	TGATCA	2 cut(s)	325, 622
BcoDI	GTCTC	2 cut(s)	429, 589
BcuI	ACTAGT	2 cut(s)	397, 449
BfaI	CTAG	2 cut(s)	398, 450
BisI	GCNGC	3 cut(s)	210, 279, 483
BlsI	GCNGC	3 cut(s)	211, 280, 484
BmcAI	AGTACT	2 cut(s)	396, 448
Bme18I	GGWCC	2 cut(s)	26, 514
BmgT120I	GGNCC	2 cut(s)	26, 514
BmsI	GCATC	2 cut(s)	469, 528
BoxI	GACNNNNGTC	1 cut(s)	601
Bpu10I	CCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	484
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	4 cut(s)	291, 385, 492, 584
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	3 cut(s)	196, 265, 494
BsiSI	CCGG	1 cut(s)	24
BsmAI	GTCTC	2 cut(s)	429, 589
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	325, 389, 622
BspACI	CCGC	1 cut(s)	167
BspCNI	CTCAG	4 cut(s)	292, 384, 493, 585
BspHI	TCATGA	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	3 cut(s)	325, 389, 622
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	189, 566
Bst6I	CTCTTC	2 cut(s)	122, 276
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	16, 306
BstDEI	CTNAG	4 cut(s)	300, 371, 501, 593
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	3 cut(s)	328, 392, 625
BstMAI	GTCTC	2 cut(s)	429, 589
BstMBI	GATC	3 cut(s)	325, 389, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	499
BstPAI	GACNNNNGTC	1 cut(s)	601
BstV1I	GCAGC	3 cut(s)	196, 265, 494
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	6 cut(s)	105, 185, 419, 571, 590, 618
Cac8I	GCNNGC	2 cut(s)	16, 306
CaiI	CAGNNNCTG	2 cut(s)	187, 236
CciI	TCATGA	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	26, 514
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	4 cut(s)	395, 447, 493, 629
CviAII	CATG	2 cut(s)	152, 496
CviQI	GTAC	4 cut(s)	395, 447, 493, 629
DdeI	CTNAG	4 cut(s)	300, 371, 501, 593
DpnI	GATC	3 cut(s)	327, 391, 624
DpnII	GATC	3 cut(s)	325, 389, 622
Eam1104I	CTCTTC	2 cut(s)	122, 276
EarI	CTCTTC	2 cut(s)	122, 276
Eco130I	CCWWGG	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	26, 514
Eco57I	CTGAAG	2 cut(s)	129, 573
EcoT14I	CCWWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	2 cut(s)	155, 499
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FatI	CATG	2 cut(s)	151, 495
FauI	CCCGC	1 cut(s)	160
FauNDI	CATATG	1 cut(s)	322
FbaI	TGATCA	2 cut(s)	325, 622
Fnu4HI	GCNGC	3 cut(s)	210, 279, 483
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	3 cut(s)	210, 279, 483
FspBI	CTAG	2 cut(s)	398, 450
GluI	GCNGC	3 cut(s)	210, 279, 483
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	155, 499
HindIII	AAGCTT	2 cut(s)	60, 111
HinfI	GANTC	4 cut(s)	227, 239, 587, 615
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	2 cut(s)	517, 597
Hpy166II	GTNNAC	2 cut(s)	173, 562
Hpy188I	TCNGA	2 cut(s)	248, 502
Hpy188III	TCNNGA	2 cut(s)	152, 575
Hpy8I	GTNNAC	2 cut(s)	173, 562
HpyAV	CCTTC	3 cut(s)	392, 474, 539
HpyCH4III	ACNGT	2 cut(s)	189, 566
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	8 cut(s)	14, 38, 212, 296, 308, 434, 482, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	4 cut(s)	300, 371, 501, 593
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	155, 499
Ksp22I	TGATCA	2 cut(s)	325, 622
Kzo9I	GATC	3 cut(s)	325, 389, 622
LguI	GCTCTTC	1 cut(s)	276
LpnPI	CCDG	7 cut(s)	37, 209, 216, 318, 358, 557, 611
Lsp1109I	GCAGC	3 cut(s)	196, 265, 494
LweI	GCATC	2 cut(s)	469, 528
MaeI	CTAG	2 cut(s)	398, 450
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	103, 603, 616
MalI	GATC	3 cut(s)	327, 391, 624
MboI	GATC	3 cut(s)	325, 389, 622
MboII	GAAGA	6 cut(s)	139, 167, 263, 266, 276, 596
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	2 cut(s)	19, 579
MlyI	GAGTC	1 cut(s)	624
MnlI	CCTC	3 cut(s)	203, 496, 505
MseI	TTAA	1 cut(s)	314
MspI	CCGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	3 cut(s)	325, 389, 622
NlaIII	CATG	2 cut(s)	155, 499
NmuCI	GTSAC	3 cut(s)	103, 603, 616
NspI	RCATGY	1 cut(s)	499
PagI	TCATGA	1 cut(s)	151
PciI	ACATGT	1 cut(s)	495
PciSI	GCTCTTC	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	227, 239, 587
PkrI	GCNGC	3 cut(s)	211, 280, 484
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
PscI	ACATGT	1 cut(s)	495
PshAI	GACNNNNGTC	1 cut(s)	601
PspPI	GGNCC	2 cut(s)	26, 514
PstNI	CAGNNNCTG	2 cut(s)	187, 236
RsaI	GTAC	4 cut(s)	396, 448, 494, 630
RsaNI	GTAC	4 cut(s)	395, 447, 493, 629
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	3 cut(s)	210, 279, 483
Sau3AI	GATC	3 cut(s)	325, 389, 622
Sau96I	GGNCC	2 cut(s)	26, 514
ScaI	AGTACT	2 cut(s)	396, 448
SchI	GAGTC	1 cut(s)	624
SduI	GDGCHC	1 cut(s)	271
SfaNI	GCATC	2 cut(s)	469, 528
SinI	GGWCC	2 cut(s)	26, 514
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SpeI	ACTAGT	2 cut(s)	397, 449
Sse9I	AATT	2 cut(s)	19, 579
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	2 cut(s)	398, 450
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	189, 566
TaiI	ACGT	1 cut(s)	147
TasI	AATT	2 cut(s)	19, 579
TatI	WGTACW	2 cut(s)	394, 446
TfiI	GAWTC	3 cut(s)	227, 239, 587
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	6 cut(s)	112, 192, 419, 571, 597, 625
TseFI	GTSAC	3 cut(s)	103, 603, 616
TseI	GCWGC	3 cut(s)	209, 278, 482
Tsp45I	GTSAC	3 cut(s)	103, 603, 616
TspDTI	ATGAA	5 cut(s)	96, 137, 168, 267, 398
TspRI	CASTG	6 cut(s)	112, 192, 419, 571, 597, 625
VpaK11BI	GGWCC	2 cut(s)	26, 514
XceI	RCATGY	1 cut(s)	499
XspI	CTAG	2 cut(s)	398, 450
ZrmI	AGTACT	2 cut(s)	396, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.