Nuclear pore complex protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G14850 |
| fragaria_vesca | FvH4_4g33560 FvH4_4g33560 FvH4_4g33560 |
| malus_domestica | MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1 |
| prunus_persica | Prupe.1G333300_v2.0.a1 |
| pyrus_communis | pycom13g01720 pycom16g01690 |
| rosa_chinensis | RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061 |
| rosa_laevigata | RLG00000005957 RLG00000021689 |
| rosa_multiflora | Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00083800 Rroxscaffold_5G00383690 |
| rosa_rugosa | Rorug04G0344100 |
| rosa_samantha | Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800 |
| rosa_wichuraiana | Rw2G049490 Rw4G034330 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1790 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2293 |
| AatII | GACGTC | 1 cut(s) | 21 |
| Acc36I | ACCTGC | 1 cut(s) | 1909 |
| Acc65I | GGTACC | 1 cut(s) | 3202 |
| AccB1I | GGYRCC | 3 cut(s) | 2240, 2273, 3202 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 159, 557, 1076, 4225 |
| AccI | GTMKAC | 5 cut(s) | 542, 644, 995, 1204, 1653 |
| AccII | CGCG | 3 cut(s) | 7, 30, 83 |
| AciI | CCGC | 9 cut(s) | 7, 44, 173, 234, 512, 1286, 1736, 1898, 2885 |
| AclWI | GGATC | 8 cut(s) | 369, 497, 569, 661, 752, 2717, 3399, 3824 |
| AcoI | YGGCCR | 2 cut(s) | 161, 622 |
| AcsI | RAATTY | 4 cut(s) | 889, 1081, 1706, 2234 |
| AcuI | CTGAAG | 4 cut(s) | 812, 834, 1839, 3396 |
| AcyI | GRCGYC | 1 cut(s) | 18 |
| AdeI | CACNNNGTG | 1 cut(s) | 3515 |
| AfeI | AGCGCT | 1 cut(s) | 2050 |
| AflII | CTTAAG | 2 cut(s) | 2767, 4426 |
| AflIII | ACRYGT | 2 cut(s) | 581, 2944 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3274, 3306 |
| Alw21I | GWGCWC | 3 cut(s) | 949, 1957, 2977 |
| Alw44I | GTGCAC | 2 cut(s) | 1953, 2973 |
| AlwI | GGATC | 8 cut(s) | 369, 497, 569, 661, 752, 2717, 3399, 3824 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2726, 2786, 3364 |
| Ama87I | CYCGRG | 1 cut(s) | 1377 |
| Aor51HI | AGCGCT | 1 cut(s) | 2050 |
| ApaLI | GTGCAC | 2 cut(s) | 1953, 2973 |
| ApoI | RAATTY | 4 cut(s) | 889, 1081, 1706, 2234 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1823, 1855 |
| AseI | ATTAAT | 1 cut(s) | 3869 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 420, 737, 4270 |
| Asp718I | GGTACC | 1 cut(s) | 3202 |
| AspLEI | GCGC | 2 cut(s) | 30, 2051 |
| AsuHPI | GGTGA | 9 cut(s) | 125, 556, 978, 1742, 2029, 2900, 3005, 3839, 3980 |
| AsuII | TTCGAA | 2 cut(s) | 2503, 3777 |
| AsuNHI | GCTAGC | 1 cut(s) | 1756 |
| AvaI | CYCGRG | 1 cut(s) | 1377 |
| AvaII | GGWCC | 5 cut(s) | 938, 1724, 1831, 2591, 3191 |
| AxyI | CCTNAGG | 1 cut(s) | 4154 |
| BaeGI | GKGCMC | 2 cut(s) | 1957, 2977 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 115, 148, 4343, 4376 |
| BalI | TGGCCA | 1 cut(s) | 163 |
| BanI | GGYRCC | 3 cut(s) | 2240, 2273, 3202 |
| BanII | GRGCYC | 2 cut(s) | 949, 4063 |
| BauI | CACGAG | 2 cut(s) | 3702, 4181 |
| BbsI | GAAGAC | 1 cut(s) | 3977 |
| Bbv12I | GWGCWC | 3 cut(s) | 949, 1957, 2977 |
| BceAI | ACGGC | 2 cut(s) | 637, 2672 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 61, 95, 2787, 2821 |
| BciVI | GTATCC | 1 cut(s) | 178 |
| BclI | TGATCA | 3 cut(s) | 894, 3055, 4111 |
| BfmI | CTRYAG | 5 cut(s) | 524, 972, 1650, 2077, 3294 |
| BfoI | RGCGCY | 1 cut(s) | 2052 |
| BfrI | CTTAAG | 2 cut(s) | 2767, 4426 |
| BfuAI | ACCTGC | 1 cut(s) | 1909 |
| BfuI | GTATCC | 1 cut(s) | 178 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2175 |
| BglII | AGATCT | 1 cut(s) | 4317 |
| BlpI | GCTNAGC | 1 cut(s) | 1935 |
| BmcAI | AGTACT | 5 cut(s) | 207, 1351, 1615, 3134, 4179 |
| Bme18I | GGWCC | 5 cut(s) | 938, 1724, 1831, 2591, 3191 |
| BmeT110I | CYCGRG | 1 cut(s) | 1377 |
| BmiI | GGNNCC | 9 cut(s) | 1833, 2156, 2168, 2224, 2242, 2275, 3204, 4246, 4403 |
| BmrI | ACTGGG | 1 cut(s) | 3654 |
| BmsI | GCATC | 8 cut(s) | 296, 2467, 2881, 3111, 3308, 3370, 3644, 4384 |
| BmtI | GCTAGC | 1 cut(s) | 1760 |
| BmuI | ACTGGG | 1 cut(s) | 3654 |
| BpiI | GAAGAC | 1 cut(s) | 3977 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1667, 1699, 3730, 3762, 4348, 4380 |
| BpmI | CTGGAG | 6 cut(s) | 186, 504, 2414, 3595, 3969, 4263 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1935 |
| Bpu14I | TTCGAA | 2 cut(s) | 2503, 3777 |
| BpuEI | CTTGAG | 4 cut(s) | 1309, 1880, 2720, 3617 |
| BsaAI | YACGTR | 1 cut(s) | 3379 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2481, 3581 |
| BsaHI | GRCGYC | 1 cut(s) | 18 |
| BsaI | GGTCTC | 3 cut(s) | 523, 2535, 3067 |
| BsaJI | CCNNGG | 9 cut(s) | 1589, 1688, 1764, 2361, 2376, 2688, 3612, 3646, 4300 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1051, 1081, 4152, 4182 |
| Bse21I | CCTNAGG | 1 cut(s) | 4154 |
| Bse3DI | GCAATG | 4 cut(s) | 530, 1801, 3270, 4209 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2481, 3581 |
| BseDI | CCNNGG | 9 cut(s) | 1589, 1688, 1764, 2361, 2376, 2688, 3612, 3646, 4300 |
| BseGI | GGATG | 7 cut(s) | 148, 337, 913, 1056, 2644, 3102, 3424 |
| BseJI | GATNNNNATC | 2 cut(s) | 2481, 3581 |
| BseMI | GCAATG | 4 cut(s) | 530, 1801, 3270, 4209 |
| BseRI | GAGGAG | 4 cut(s) | 1140, 1535, 1678, 3012 |
| BseSI | GKGCMC | 2 cut(s) | 1957, 2977 |
| BseYI | CCCAGC | 3 cut(s) | 87, 611, 1340 |
| BsgI | GTGCAG | 6 cut(s) | 2628, 3024, 3492, 3987, 4080, 4347 |
| Bsh1236I | CGCG | 3 cut(s) | 7, 30, 83 |
| BshNI | GGYRCC | 3 cut(s) | 2240, 2273, 3202 |
| BsiHKAI | GWGCWC | 3 cut(s) | 949, 1957, 2977 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1377 |
| BslFI | GGGAC | 5 cut(s) | 70, 1372, 3174, 3300, 4416 |
| BsmBI | CGTCTC | 1 cut(s) | 1305 |
| BsmFI | GGGAC | 5 cut(s) | 70, 1372, 3174, 3300, 4416 |
| BsmI | GAATGC | 3 cut(s) | 1428, 1854, 2387 |
| Bso31I | GGTCTC | 3 cut(s) | 523, 2535, 3067 |
| BsoBI | CYCGRG | 1 cut(s) | 1377 |
| Bsp119I | TTCGAA | 2 cut(s) | 2503, 3777 |
| Bsp1286I | GDGCHC | 4 cut(s) | 949, 1957, 2977, 4063 |
| Bsp1407I | TGTACA | 1 cut(s) | 2947 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1935 |
| Bsp19I | CCATGG | 3 cut(s) | 2361, 2376, 3646 |
| BspACI | CCGC | 9 cut(s) | 7, 44, 173, 234, 512, 1286, 1736, 1898, 2885 |
| BspFNI | CGCG | 3 cut(s) | 7, 30, 83 |
| BspHI | TCATGA | 1 cut(s) | 3127 |
| BspLI | GGNNCC | 9 cut(s) | 1833, 2156, 2168, 2224, 2242, 2275, 3204, 4246, 4403 |
| BspMAI | CTGCAG | 1 cut(s) | 2081 |
| BspMI | ACCTGC | 1 cut(s) | 1909 |
| BspOI | GCTAGC | 1 cut(s) | 1760 |
| BspPI | GGATC | 8 cut(s) | 369, 497, 569, 661, 752, 2717, 3399, 3824 |
| BspQI | GCTCTTC | 2 cut(s) | 4068, 4371 |
| BspT104I | TTCGAA | 2 cut(s) | 2503, 3777 |
| BspT107I | GGYRCC | 3 cut(s) | 2240, 2273, 3202 |
| BspTI | CTTAAG | 2 cut(s) | 2767, 4426 |
| BspTNI | GGTCTC | 3 cut(s) | 523, 2535, 3067 |
| BsrDI | GCAATG | 4 cut(s) | 530, 1801, 3270, 4209 |
| BsrGI | TGTACA | 1 cut(s) | 2947 |
| BssECI | CCNNGG | 9 cut(s) | 1589, 1688, 1764, 2361, 2376, 2688, 3612, 3646, 4300 |
| BssNAI | GTATAC | 2 cut(s) | 543, 645 |
| BssNI | GRCGYC | 1 cut(s) | 18 |
| BssSI | CACGAG | 2 cut(s) | 3702, 4181 |
| BssT1I | CCWWGG | 5 cut(s) | 1589, 2361, 2376, 3646, 4300 |
| Bst1107I | GTATAC | 2 cut(s) | 543, 645 |
| Bst2BI | CACGAG | 2 cut(s) | 3702, 4181 |
| Bst6I | CTCTTC | 7 cut(s) | 1308, 3347, 3731, 3917, 4068, 4371, 4410 |
| BstACI | GRCGYC | 1 cut(s) | 18 |
| BstAFI | CTTAAG | 2 cut(s) | 2767, 4426 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3364, 3515 |
| BstAUI | TGTACA | 1 cut(s) | 2947 |
| BstBAI | YACGTR | 1 cut(s) | 3379 |
| BstBI | TTCGAA | 2 cut(s) | 2503, 3777 |
| BstDSI | CCRYGG | 4 cut(s) | 2361, 2376, 2688, 3646 |
| BstEII | GGTNACC | 1 cut(s) | 2993 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1155, 3056, 3995 |
| BstF5I | GGATG | 7 cut(s) | 148, 337, 913, 1056, 2644, 3102, 3424 |
| BstFNI | CGCG | 3 cut(s) | 7, 30, 83 |
| BstH2I | RGCGCY | 1 cut(s) | 2052 |
| BstHHI | GCGC | 2 cut(s) | 30, 2051 |
| BstNSI | RCATGY | 1 cut(s) | 585 |
| BstPI | GGTNACC | 1 cut(s) | 2993 |
| BstSFI | CTRYAG | 5 cut(s) | 524, 972, 1650, 2077, 3294 |
| BstSLI | GKGCMC | 2 cut(s) | 1957, 2977 |
| BstUI | CGCG | 3 cut(s) | 7, 30, 83 |
| BstV2I | GAAGAC | 1 cut(s) | 3977 |
| BstX2I | RGATCY | 3 cut(s) | 502, 2722, 4317 |
| BstYI | RGATCY | 3 cut(s) | 502, 2722, 4317 |
| BstZ17I | GTATAC | 2 cut(s) | 543, 645 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4154 |
| BsuI | GTATCC | 1 cut(s) | 178 |
| BtgI | CCRYGG | 4 cut(s) | 2361, 2376, 2688, 3646 |
| BtgZI | GCGATG | 1 cut(s) | 45 |
| BtsCI | GGATG | 7 cut(s) | 148, 337, 913, 1056, 2644, 3102, 3424 |
| BtsI | GCAGTG | 2 cut(s) | 2975, 3267 |
| BveI | ACCTGC | 1 cut(s) | 1909 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2726, 2786, 3364 |
| CciI | TCATGA | 1 cut(s) | 3127 |
| CfoI | GCGC | 2 cut(s) | 30, 2051 |
| CseI | GACGC | 1 cut(s) | 72 |
| CsiI | ACCWGGT | 2 cut(s) | 400, 1726 |
| DraI | TTTAAA | 1 cut(s) | 1125 |
| DraIII | CACNNNGTG | 1 cut(s) | 3515 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2293 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2293 |
| EaeI | YGGCCR | 2 cut(s) | 161, 622 |
| Eam1104I | CTCTTC | 7 cut(s) | 1308, 3347, 3731, 3917, 4068, 4371, 4410 |
| EarI | CTCTTC | 7 cut(s) | 1308, 3347, 3731, 3917, 4068, 4371, 4410 |
| EciI | GGCGGA | 1 cut(s) | 1275 |
| Ecl136II | GAGCTC | 1 cut(s) | 947 |
| Eco130I | CCWWGG | 5 cut(s) | 1589, 2361, 2376, 3646, 4300 |
| Eco147I | AGGCCT | 2 cut(s) | 1144, 1648 |
| Eco24I | GRGCYC | 2 cut(s) | 949, 4063 |
| Eco31I | GGTCTC | 3 cut(s) | 523, 2535, 3067 |
| Eco47I | GGWCC | 5 cut(s) | 938, 1724, 1831, 2591, 3191 |
| Eco47III | AGCGCT | 1 cut(s) | 2050 |
| Eco53kI | GAGCTC | 1 cut(s) | 947 |
| Eco57I | CTGAAG | 4 cut(s) | 812, 834, 1839, 3396 |
| Eco81I | CCTNAGG | 1 cut(s) | 4154 |
| Eco88I | CYCGRG | 1 cut(s) | 1377 |
| Eco91I | GGTNACC | 1 cut(s) | 2993 |
| EcoICRI | GAGCTC | 1 cut(s) | 947 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1155, 3056, 3995 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1831, 2167, 3191 |
| EcoO65I | GGTNACC | 1 cut(s) | 2993 |
| EcoRI | GAATTC | 2 cut(s) | 1706, 2234 |
| EcoT14I | CCWWGG | 5 cut(s) | 1589, 2361, 2376, 3646, 4300 |
| EcoT22I | ATGCAT | 1 cut(s) | 2387 |
| EcoT38I | GRGCYC | 2 cut(s) | 949, 4063 |
| ErhI | CCWWGG | 5 cut(s) | 1589, 2361, 2376, 3646, 4300 |
| Esp3I | CGTCTC | 1 cut(s) | 1305 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3540, 3572, 3841, 3873 |
| FaqI | GGGAC | 5 cut(s) | 70, 1372, 3174, 3300, 4416 |
| FauI | CCCGC | 4 cut(s) | 37, 227, 1891, 2878 |
| FauNDI | CATATG | 2 cut(s) | 508, 4108 |
| FbaI | TGATCA | 3 cut(s) | 894, 3055, 4111 |
| FblI | GTMKAC | 5 cut(s) | 542, 644, 995, 1204, 1653 |
| FokI | GGATG | 7 cut(s) | 135, 344, 920, 1063, 2651, 3089, 3431 |
| FriOI | GRGCYC | 2 cut(s) | 949, 4063 |
| GlaI | GCGC | 2 cut(s) | 29, 2050 |
| GsaI | CCCAGC | 3 cut(s) | 91, 615, 1344 |
| GsuI | CTGGAG | 6 cut(s) | 186, 504, 2414, 3595, 3969, 4263 |
| HaeII | RGCGCY | 1 cut(s) | 2052 |
| HgaI | GACGC | 1 cut(s) | 72 |
| HhaI | GCGC | 2 cut(s) | 30, 2051 |
| Hin1I | GRCGYC | 1 cut(s) | 18 |
| Hin6I | GCGC | 2 cut(s) | 28, 2049 |
| HinP1I | GCGC | 2 cut(s) | 28, 2049 |
| HincII | GTYRAC | 1 cut(s) | 4297 |
| HindII | GTYRAC | 1 cut(s) | 4297 |
| HindIII | AAGCTT | 5 cut(s) | 114, 1547, 1821, 3554, 3906 |
| HpaI | GTTAAC | 1 cut(s) | 4297 |
| HphI | GGTGA | 9 cut(s) | 125, 556, 978, 1742, 2029, 2900, 3005, 3839, 3980 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 23 |
| HpyCH4IV | ACGT | 3 cut(s) | 18, 2944, 3378 |
| HpySE526I | ACGT | 3 cut(s) | 18, 2944, 3378 |
| Hsp92I | GRCGYC | 1 cut(s) | 18 |
| HspAI | GCGC | 2 cut(s) | 28, 2049 |
| KpnI | GGTACC | 1 cut(s) | 3206 |
| Ksp22I | TGATCA | 3 cut(s) | 894, 3055, 4111 |
| KspAI | GTTAAC | 1 cut(s) | 4297 |
| LguI | GCTCTTC | 2 cut(s) | 4068, 4371 |
| LmnI | GCTCC | 7 cut(s) | 749, 952, 2222, 2433, 3956, 4244, 4279 |
| LweI | GCATC | 8 cut(s) | 296, 2467, 2881, 3111, 3308, 3370, 3644, 4384 |
| MabI | ACCWGGT | 2 cut(s) | 400, 1726 |
| MaeII | ACGT | 3 cut(s) | 18, 2944, 3378 |
| MfeI | CAATTG | 1 cut(s) | 1491 |
| MflI | RGATCY | 3 cut(s) | 502, 2722, 4317 |
| MhlI | GDGCHC | 4 cut(s) | 949, 1957, 2977, 4063 |
| MlsI | TGGCCA | 1 cut(s) | 163 |
| MluNI | TGGCCA | 1 cut(s) | 163 |
| MlyI | GAGTC | 6 cut(s) | 1316, 1532, 1685, 2303, 2672, 4427 |
| MmeI | TCCRAC | 8 cut(s) | 448, 656, 1600, 1704, 1825, 3159, 3525, 4018 |
| Mox20I | TGGCCA | 1 cut(s) | 163 |
| Mph1103I | ATGCAT | 1 cut(s) | 2387 |
| MroXI | GAANNNNTTC | 3 cut(s) | 420, 737, 4270 |
| MscI | TGGCCA | 1 cut(s) | 163 |
| MslI | CAYNNNNRTG | 3 cut(s) | 138, 630, 770 |
| Msp20I | TGGCCA | 1 cut(s) | 163 |
| MspA1I | CMGCKG | 4 cut(s) | 230, 1340, 1817, 1895 |
| MspCI | CTTAAG | 2 cut(s) | 2767, 4426 |
| MunI | CAATTG | 1 cut(s) | 1491 |
| Mva1269I | GAATGC | 3 cut(s) | 1428, 1854, 2387 |
| MvnI | CGCG | 3 cut(s) | 7, 30, 83 |
| NcoI | CCATGG | 3 cut(s) | 2361, 2376, 3646 |
| NdeI | CATATG | 2 cut(s) | 508, 4108 |
| NheI | GCTAGC | 1 cut(s) | 1756 |
| NlaIV | GGNNCC | 9 cut(s) | 1833, 2156, 2168, 2224, 2242, 2275, 3204, 4246, 4403 |
| NsiI | ATGCAT | 1 cut(s) | 2387 |
| NspI | RCATGY | 1 cut(s) | 585 |
| NspV | TTCGAA | 2 cut(s) | 2503, 3777 |
| PagI | TCATGA | 1 cut(s) | 3127 |
| PceI | AGGCCT | 2 cut(s) | 1144, 1648 |
| PciI | ACATGT | 1 cut(s) | 581 |
| PciSI | GCTCTTC | 2 cut(s) | 4068, 4371 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 27, 4168 |
| PctI | GAATGC | 3 cut(s) | 1428, 1854, 2387 |
| PdmI | GAANNNNTTC | 3 cut(s) | 420, 737, 4270 |
| PflFI | GACNNNGTC | 3 cut(s) | 17, 339, 964 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 159, 557, 1076, 4225 |
| PfoI | TCCNGGA | 1 cut(s) | 3946 |
| PleI | GAGTC | 6 cut(s) | 1316, 1531, 1684, 2302, 2671, 4426 |
| PpsI | GAGTC | 6 cut(s) | 1316, 1531, 1684, 2302, 2671, 4426 |
| Ppu21I | YACGTR | 1 cut(s) | 3379 |
| PpuMI | RGGWCCY | 2 cut(s) | 1831, 3191 |
| PscI | ACATGT | 1 cut(s) | 581 |
| PshBI | ATTAAT | 1 cut(s) | 3869 |
| PsiI | TTATAA | 1 cut(s) | 1790 |
| Psp124BI | GAGCTC | 1 cut(s) | 949 |
| Psp5II | RGGWCCY | 2 cut(s) | 1831, 3191 |
| PspEI | GGTNACC | 1 cut(s) | 2993 |
| PspFI | CCCAGC | 3 cut(s) | 87, 611, 1340 |
| PspN4I | GGNNCC | 9 cut(s) | 1833, 2156, 2168, 2224, 2242, 2275, 3204, 4246, 4403 |
| PspPPI | RGGWCCY | 2 cut(s) | 1831, 3191 |
| PstI | CTGCAG | 1 cut(s) | 2081 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2726, 2786, 3364 |
| PsuI | RGATCY | 3 cut(s) | 502, 2722, 4317 |
| PsyI | GACNNNGTC | 3 cut(s) | 17, 339, 964 |
| PvuII | CAGCTG | 4 cut(s) | 230, 1340, 1817, 1895 |
| RseI | CAYNNNNRTG | 3 cut(s) | 138, 630, 770 |
| SacI | GAGCTC | 1 cut(s) | 949 |
| SapI | GCTCTTC | 2 cut(s) | 4068, 4371 |
| ScaI | AGTACT | 5 cut(s) | 207, 1351, 1615, 3134, 4179 |
| SchI | GAGTC | 6 cut(s) | 1316, 1532, 1685, 2303, 2672, 4427 |
| SduI | GDGCHC | 4 cut(s) | 949, 1957, 2977, 4063 |
| SexAI | ACCWGGT | 2 cut(s) | 400, 1726 |
| SfaNI | GCATC | 8 cut(s) | 296, 2467, 2881, 3111, 3308, 3370, 3644, 4384 |
| SfcI | CTRYAG | 5 cut(s) | 524, 972, 1650, 2077, 3294 |
| SfuI | TTCGAA | 2 cut(s) | 2503, 3777 |
| SinI | GGWCC | 5 cut(s) | 938, 1724, 1831, 2591, 3191 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 138, 630, 770 |
| SmlI | CTYRAG | 6 cut(s) | 1324, 1859, 2699, 2767, 3596, 4426 |
| SmoI | CTYRAG | 6 cut(s) | 1324, 1859, 2699, 2767, 3596, 4426 |
| SseBI | AGGCCT | 2 cut(s) | 1144, 1648 |
| SsiI | CCGC | 9 cut(s) | 7, 44, 173, 234, 512, 1286, 1736, 1898, 2885 |
| SspI | AATATT | 1 cut(s) | 3320 |
| SstI | GAGCTC | 1 cut(s) | 949 |
| StuI | AGGCCT | 2 cut(s) | 1144, 1648 |
| StyI | CCWWGG | 5 cut(s) | 1589, 2361, 2376, 3646, 4300 |
| TaiI | ACGT | 3 cut(s) | 21, 2947, 3381 |
| TaqII | GACCGA | 1 cut(s) | 78 |
| TatI | WGTACW | 7 cut(s) | 205, 1349, 1613, 2713, 2947, 3132, 4177 |
| TauI | GCSGC | 1 cut(s) | 1739 |
| TspGWI | ACGGA | 5 cut(s) | 602, 2299, 3201, 3557, 4369 |
| Tth111I | GACNNNGTC | 3 cut(s) | 17, 339, 964 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 159, 557, 1076, 4225 |
| Vha464I | CTTAAG | 2 cut(s) | 2767, 4426 |
| VneI | GTGCAC | 2 cut(s) | 1953, 2973 |
| VpaK11BI | GGWCC | 5 cut(s) | 938, 1724, 1831, 2591, 3191 |
| VspI | ATTAAT | 1 cut(s) | 3869 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1155, 3056, 3995 |
| XapI | RAATTY | 4 cut(s) | 889, 1081, 1706, 2234 |
| XbaI | TCTAGA | 3 cut(s) | 2147, 3430, 3796 |
| XceI | RCATGY | 1 cut(s) | 585 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 46, 769, 1696, 2251, 3780 |
| XmiI | GTMKAC | 5 cut(s) | 542, 644, 995, 1204, 1653 |
| XmnI | GAANNNNTTC | 3 cut(s) | 420, 737, 4270 |
| ZraI | GACGTC | 1 cut(s) | 19 |
| ZrmI | AGTACT | 5 cut(s) | 207, 1351, 1615, 3134, 4179 |
| Zsp2I | ATGCAT | 1 cut(s) | 2387 |