Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039405.1

Orthogroup ID

OG0003791

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 477

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039405.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ttacctttgcagaaggcacaagctcttgaccccaaaggtgatgcttttaataaccaaattgatgcagcagttcgagaagatacagttgctaaacgtgttcagtgtcatgacattatcatcagtgcactgcgttctctaaaaggtgtacatattggttcctcttctcggaacagacatgtgtgccaaattgttcagcttggcatccgatttccagacaggttatttcatgagtacttgtgccttgccatgattgatttcggccttgaaaatgagctgtttgagtttggaggtcctaatttggtgcctttactacaaagtgtagccggtgaacctatacaagaggttcaagctatttctcccattggtcattcaggaacactttttccaactaaaaaagccaaatattgtgacgttttggcaagttactatgccttgaaagatcggcttgcagctcatgcattgcaaagactggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006998 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010256 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0017038 GO:0017056 GO:0030054 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044611 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0061024 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

158

Amino Acids

17.43

Weight (kDa)

7.88

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14850
fragaria_vesca	FvH4_4g33560 FvH4_4g33560 FvH4_4g33560
malus_domestica	MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1
prunus_persica	Prupe.1G333300_v2.0.a1
pyrus_communis	pycom13g01720 pycom16g01690
rosa_chinensis	RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061
rosa_laevigata	RLG00000005957 RLG00000021689
rosa_multiflora	Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083800 Rroxscaffold_5G00383690
rosa_rugosa	Rorug04G0344100
rosa_samantha	Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800
rosa_wichuraiana	Rw2G049490 Rw4G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	301
AfaI	GTAC	2 cut(s)	147, 233
AfiI	CCNNNNNNNGG	1 cut(s)	165
AflIII	ACRYGT	2 cut(s)	94, 175
AgsI	TTSAA	3 cut(s)	266, 347, 436
AloI	GAACNNNNNNTCC	2 cut(s)	367, 399
AluBI	AGCT	5 cut(s)	23, 196, 274, 350, 452
AluI	AGCT	5 cut(s)	23, 196, 274, 350, 452
Alw21I	GWGCWC	1 cut(s)	127
Alw44I	GTGCAC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	259
ApaLI	GTGCAC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	65, 449
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	50, 338
AvaII	GGWCC	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	77, 461
BisI	GCNGC	2 cut(s)	66, 450
BlsI	GCNGC	2 cut(s)	67, 451
BmcAI	AGTACT	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	2 cut(s)	157, 303
BmsI	GCATC	3 cut(s)	31, 52, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	458
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	474
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	77, 461
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	165
BsnI	GGCC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	439
BspANI	GGCC	1 cut(s)	261
BspHI	TCATGA	2 cut(s)	106, 226
BspLI	GGNNCC	2 cut(s)	157, 303
BspT107I	GGYRCC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	474
BssAI	RCCGGY	1 cut(s)	323
BssMI	GATC	1 cut(s)	439
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstAUI	TGTACA	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	442
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	77, 461
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	201
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	3 cut(s)	107, 125, 127
Cac8I	GCNNGC	1 cut(s)	447
CciI	TCATGA	2 cut(s)	106, 226
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	146, 232
CviAII	CATG	5 cut(s)	107, 176, 227, 247, 455
CviJI	RGCY	9 cut(s)	23, 196, 261, 274, 323, 350, 398, 445, 452
CviKI_1	RGCY	9 cut(s)	23, 196, 261, 274, 323, 350, 398, 445, 452
CviQI	GTAC	2 cut(s)	146, 232
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	290
EcoT22I	ATGCAT	1 cut(s)	460
FaeI	CATG	5 cut(s)	110, 179, 230, 250, 458
FaiI	YATR	9 cut(s)	108, 150, 177, 228, 248, 335, 429, 456, 475
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FatI	CATG	5 cut(s)	106, 175, 226, 246, 454
Fnu4HI	GCNGC	2 cut(s)	66, 450
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	66, 450
GluI	GCNGC	2 cut(s)	66, 450
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	5 cut(s)	110, 179, 230, 250, 458
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	2 cut(s)	50, 338
Hpy166II	GTNNAC	3 cut(s)	125, 146, 329
Hpy188I	TCNGA	2 cut(s)	168, 206
Hpy188III	TCNNGA	6 cut(s)	26, 74, 107, 212, 227, 372
Hpy8I	GTNNAC	3 cut(s)	125, 146, 329
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	94, 411
HpyCH4V	TGCA	6 cut(s)	10, 65, 125, 449, 458, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpySE526I	ACGT	2 cut(s)	94, 411
Hsp92II	CATG	5 cut(s)	110, 179, 230, 250, 458
Kzo9I	GATC	1 cut(s)	439
LpnPI	CCDG	5 cut(s)	202, 225, 337, 357, 455
Lsp1109I	GCAGC	2 cut(s)	77, 461
LweI	GCATC	3 cut(s)	31, 52, 210
MaeII	ACGT	2 cut(s)	94, 411
MaeIII	GTNAC	2 cut(s)	407, 422
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	2 cut(s)	89, 153
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	3 cut(s)	57, 186, 295
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	3 cut(s)	169, 281, 334
Mph1103I	ATGCAT	1 cut(s)	460
MseI	TTAA	1 cut(s)	48
MspI	CCGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	5 cut(s)	110, 179, 230, 250, 458
NlaIV	GGNNCC	2 cut(s)	157, 303
NmuCI	GTSAC	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	179
PagI	TCATGA	2 cut(s)	106, 226
PciI	ACATGT	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	67, 451
PpuMI	RGGWCCY	1 cut(s)	290
PscI	ACATGT	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	290
PspN4I	GGNNCC	2 cut(s)	157, 303
PspPI	GGNCC	1 cut(s)	290
PspPPI	RGGWCCY	1 cut(s)	290
RsaI	GTAC	2 cut(s)	147, 233
RsaNI	GTAC	2 cut(s)	146, 232
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	2 cut(s)	66, 450
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	1 cut(s)	290
ScaI	AGTACT	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	3 cut(s)	31, 52, 210
SinI	GGWCC	1 cut(s)	290
Sse9I	AATT	3 cut(s)	57, 186, 295
SspI	AATATT	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	97, 414
TaqI	TCGA	1 cut(s)	73
TasI	AATT	3 cut(s)	57, 186, 295
TatI	WGTACW	2 cut(s)	145, 231
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	3 cut(s)	107, 127, 132
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	2 cut(s)	65, 449
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	215
TspRI	CASTG	3 cut(s)	107, 127, 132
VneI	GTGCAC	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	290
XceI	RCATGY	1 cut(s)	179
ZrmI	AGTACT	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.