Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003791

Physical Location & Seq

Genomic Coordinates Forward (+)

82747520 .. 82748167

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG605900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCTATACTATGCAAGCAATTCCGGTCCTAATGTTGCATATAGTAGCAGTATAAGAGAAGCTTGGACTAAAGTAGTTGATGAAGCACTTTCAAAAGGTGGCGTCGCTGAAGCTTGTTGGCCACTGTGCCTCCACCTTGACAAAGCTGCATTGGAAAGACTGGAATCAGGGGCTGAATCCATCGGAGATGAAGATGTGGCAAGGGCTCTTCTTGCTGCTTCTTCCAAGGGTGCAACTGAGCCTGCATTGTTAAACGCATATGATCACTTATTATCAAAGAATGGTGCTGTTTCGCAATCGCCAAAGCTCAGGCTACACCTTCTGCGATCAGTACTAGTGATACTTCATCAGTGGGCAATGTCTCTGTTTGCACACAGAATGAGTACTAGTGCTTATAGACCTTCGATTATTTTGGATGCAGCAAAAAGGTACATGTCTGAGGTGAGTGAGGTCCAAAGATTAGACCTTCCACAGATGCACCAGCAAACTGAAGCTGTTTACAGTGGCTTTCAAGAAATTGAAGAATCACTGAGACACAAGTCACCTTTAAGAGTCACTGATCAGGTACTCATATCCTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006998 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010256 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0017038 GO:0017056 GO:0030054 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044611 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0061024 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

194

Amino Acids

21.43

Weight (kDa)

6.16

Isoelectric Point (pI)

66.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14850
fragaria_vesca	FvH4_4g33560 FvH4_4g33560 FvH4_4g33560
malus_domestica	MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1
prunus_persica	Prupe.1G333300_v2.0.a1
pyrus_communis	pycom13g01720 pycom16g01690
rosa_chinensis	RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061
rosa_laevigata	RLG00000005957 RLG00000021689
rosa_multiflora	Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083800 Rroxscaffold_5G00383690
rosa_rugosa	Rorug04G0344100
rosa_samantha	Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800
rosa_wichuraiana	Rw2G049490 Rw4G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	119
AcuI	CTGAAG	2 cut(s)	129, 510
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	4 cut(s)	333, 385, 431, 567
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	3 cut(s)	93, 512, 521
AhlI	ACTAGT	2 cut(s)	334, 386
AluBI	AGCT	5 cut(s)	62, 113, 146, 307, 494
AluI	AGCT	5 cut(s)	62, 113, 146, 307, 494
Alw26I	GTCTC	2 cut(s)	366, 526
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	3 cut(s)	146, 215, 419
AspS9I	GGNCC	2 cut(s)	26, 451
AsuHPI	GGTGA	2 cut(s)	454, 534
AvaII	GGWCC	2 cut(s)	26, 451
BalI	TGGCCA	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	208
BbvI	GCAGC	3 cut(s)	133, 202, 431
BccI	CCATC	1 cut(s)	188
BclI	TGATCA	2 cut(s)	262, 559
BcoDI	GTCTC	2 cut(s)	366, 526
BcuI	ACTAGT	2 cut(s)	334, 386
BfaI	CTAG	2 cut(s)	335, 387
BisI	GCNGC	3 cut(s)	147, 216, 420
BlsI	GCNGC	3 cut(s)	148, 217, 421
BmcAI	AGTACT	2 cut(s)	333, 385
Bme18I	GGWCC	2 cut(s)	26, 451
BmgT120I	GGNCC	2 cut(s)	26, 451
BmsI	GCATC	2 cut(s)	406, 465
BoxI	GACNNNNGTC	1 cut(s)	538
Bpu10I	CCTNAGC	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	421
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	4 cut(s)	228, 322, 429, 521
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	133, 202, 431
BshFI	GGCC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	24
BsmAI	GTCTC	2 cut(s)	366, 526
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	262, 326, 559
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	4 cut(s)	229, 321, 430, 522
BspQI	GCTCTTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	262, 326, 559
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	126, 503
Bst6I	CTCTTC	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	16, 243
BstDEI	CTNAG	4 cut(s)	237, 308, 438, 530
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	3 cut(s)	265, 329, 562
BstMAI	GTCTC	2 cut(s)	366, 526
BstMBI	GATC	3 cut(s)	262, 326, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	436
BstPAI	GACNNNNGTC	1 cut(s)	538
BstV1I	GCAGC	3 cut(s)	133, 202, 431
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	5 cut(s)	122, 356, 508, 527, 555
Cac8I	GCNNGC	2 cut(s)	16, 243
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	26, 451
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	4 cut(s)	332, 384, 430, 566
CviAII	CATG	1 cut(s)	433
CviQI	GTAC	4 cut(s)	332, 384, 430, 566
DdeI	CTNAG	4 cut(s)	237, 308, 438, 530
DpnI	GATC	3 cut(s)	264, 328, 561
DpnII	GATC	3 cut(s)	262, 326, 559
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	26, 451
Eco57I	CTGAAG	2 cut(s)	129, 510
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	436
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FatI	CATG	1 cut(s)	432
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	2 cut(s)	262, 559
Fnu4HI	GCNGC	3 cut(s)	147, 216, 420
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	3 cut(s)	147, 216, 420
FspBI	CTAG	2 cut(s)	335, 387
GluI	GCNGC	3 cut(s)	147, 216, 420
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	436
HindIII	AAGCTT	2 cut(s)	60, 111
HinfI	GANTC	4 cut(s)	164, 176, 524, 552
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	2 cut(s)	454, 534
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	2 cut(s)	185, 439
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	329, 411, 476
HpyCH4III	ACNGT	2 cut(s)	126, 503
HpyCH4V	TGCA	8 cut(s)	14, 38, 149, 233, 245, 371, 419, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	4 cut(s)	237, 308, 438, 530
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	436
Ksp22I	TGATCA	2 cut(s)	262, 559
Kzo9I	GATC	3 cut(s)	262, 326, 559
LguI	GCTCTTC	1 cut(s)	213
LpnPI	CCDG	7 cut(s)	37, 146, 153, 255, 295, 494, 548
Lsp1109I	GCAGC	3 cut(s)	133, 202, 431
LweI	GCATC	2 cut(s)	406, 465
MaeI	CTAG	2 cut(s)	335, 387
MaeIII	GTNAC	2 cut(s)	540, 553
MalI	GATC	3 cut(s)	264, 328, 561
MboI	GATC	3 cut(s)	262, 326, 559
MboII	GAAGA	4 cut(s)	200, 203, 213, 533
MhlI	GDGCHC	1 cut(s)	208
MlsI	TGGCCA	1 cut(s)	121
MluCI	AATT	2 cut(s)	19, 516
MluNI	TGGCCA	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	561
MnlI	CCTC	3 cut(s)	140, 433, 442
Mox20I	TGGCCA	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	121
MseI	TTAA	2 cut(s)	251, 548
Msp20I	TGGCCA	1 cut(s)	121
MspI	CCGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	3 cut(s)	262, 326, 559
NlaIII	CATG	1 cut(s)	436
NmuCI	GTSAC	2 cut(s)	540, 553
NspI	RCATGY	1 cut(s)	436
PciI	ACATGT	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	164, 176, 524
PkrI	GCNGC	3 cut(s)	148, 217, 421
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PscI	ACATGT	1 cut(s)	432
PshAI	GACNNNNGTC	1 cut(s)	538
PspPI	GGNCC	2 cut(s)	26, 451
PstNI	CAGNNNCTG	1 cut(s)	173
RsaI	GTAC	4 cut(s)	333, 385, 431, 567
RsaNI	GTAC	4 cut(s)	332, 384, 430, 566
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	251, 548
SatI	GCNGC	3 cut(s)	147, 216, 420
Sau3AI	GATC	3 cut(s)	262, 326, 559
Sau96I	GGNCC	2 cut(s)	26, 451
ScaI	AGTACT	2 cut(s)	333, 385
SchI	GAGTC	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	2 cut(s)	406, 465
SinI	GGWCC	2 cut(s)	26, 451
SpeI	ACTAGT	2 cut(s)	334, 386
Sse9I	AATT	2 cut(s)	19, 516
SspMI	CTAG	2 cut(s)	335, 387
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	126, 503
TaqI	TCGA	1 cut(s)	404
TasI	AATT	2 cut(s)	19, 516
TatI	WGTACW	2 cut(s)	331, 383
TfiI	GAWTC	3 cut(s)	164, 176, 524
Tru1I	TTAA	2 cut(s)	251, 548
Tru9I	TTAA	2 cut(s)	251, 548
TscAI	CASTG	5 cut(s)	129, 356, 508, 534, 562
TseFI	GTSAC	2 cut(s)	540, 553
TseI	GCWGC	3 cut(s)	146, 215, 419
Tsp45I	GTSAC	2 cut(s)	540, 553
TspDTI	ATGAA	3 cut(s)	96, 204, 335
TspRI	CASTG	5 cut(s)	129, 356, 508, 534, 562
VpaK11BI	GGWCC	2 cut(s)	26, 451
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	2 cut(s)	335, 387
ZrmI	AGTACT	2 cut(s)	333, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.