Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7980658.1

Orthogroup ID

OG0003791

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 514

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7980658.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

gcacatggtgcttatgacaacgggcttttagaattgttggaaggaaagcttgctgttctccgttttcagataaagatcaaacaggaacttgaggctttagtctccagcgcagaagatttgcctggtgcatctgagtcccatggaactgaccccagtggcactttaactgctgattccaattttgtaaatattgcacgagaaaaggctaaagagctgtcattagacttgaagagtataactcagctatacaatgagtatgctgttccattcgaactttgggagatatgtctagaaatgctatactttgcgagctattctggtgatccagatagtagcatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006998 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010256 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0017038 GO:0017056 GO:0030054 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044611 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0061024 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

113

Amino Acids

12.43

Weight (kDa)

4.36

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14850
fragaria_vesca	FvH4_4g33560 FvH4_4g33560 FvH4_4g33560
malus_domestica	MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1
prunus_persica	Prupe.1G333300_v2.0.a1
pyrus_communis	pycom13g01720 pycom16g01690
rosa_chinensis	RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061
rosa_laevigata	RLG00000005957 RLG00000021689
rosa_multiflora	Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083800 Rroxscaffold_5G00383690
rosa_rugosa	Rorug04G0344100
rosa_samantha	Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800
rosa_wichuraiana	Rw2G049490 Rw4G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	317
AdeI	CACNNNGTG	1 cut(s)	8
AgsI	TTSAA	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	4 cut(s)	49, 214, 244, 312
AluI	AGCT	4 cut(s)	49, 214, 244, 312
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	332
AsuII	TTCGAA	1 cut(s)	270
BauI	CACGAG	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	137
BmuI	ACTGGG	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	1 cut(s)	88
Bpu14I	TTCGAA	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	123, 254
BseNI	ACTGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	121
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	75, 322
Bsp19I	CCATGG	1 cut(s)	139
BspCNI	CTCAG	2 cut(s)	124, 253
BspPI	GGATC	1 cut(s)	317
BspT104I	TTCGAA	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	2 cut(s)	75, 322
BssSI	CACGAG	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	139
Bst2BI	CACGAG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	8
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	51, 310
BstDEI	CTNAG	2 cut(s)	132, 240
BstDSI	CCRYGG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	78, 325
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	75, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	8
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	51, 310
CfoI	GCGC	1 cut(s)	110
CviAII	CATG	3 cut(s)	5, 140, 337
CviJI	RGCY	7 cut(s)	25, 49, 95, 206, 214, 244, 312
CviKI_1	RGCY	7 cut(s)	25, 49, 95, 206, 214, 244, 312
DdeI	CTNAG	2 cut(s)	132, 240
DpnI	GATC	2 cut(s)	77, 324
DpnII	GATC	2 cut(s)	75, 322
DraIII	CACNNNGTG	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	2 cut(s)	8, 143
FaiI	YATR	9 cut(s)	6, 15, 141, 236, 247, 258, 286, 301, 338
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	2 cut(s)	4, 139
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	88
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	8, 143
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	2 cut(s)	134, 173
HphI	GGTGA	1 cut(s)	332
Hpy188I	TCNGA	2 cut(s)	69, 133
Hpy188III	TCNNGA	2 cut(s)	290, 326
HpyAV	CCTTC	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	128, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	8
HpyF3I	CTNAG	2 cut(s)	132, 240
Hsp92II	CATG	2 cut(s)	8, 143
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	75, 322
LpnPI	CCDG	6 cut(s)	68, 108, 118, 135, 166, 303
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	290
MalI	GATC	2 cut(s)	77, 324
MboI	GATC	2 cut(s)	75, 322
MboII	GAAGA	2 cut(s)	125, 241
MluCI	AATT	2 cut(s)	32, 178
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	1 cut(s)	85
MseI	TTAA	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	8
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	2 cut(s)	75, 322
NlaIII	CATG	2 cut(s)	8, 143
NspV	TTCGAA	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	164
Sau3AI	GATC	2 cut(s)	75, 322
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	4 cut(s)	51, 216, 246, 314
SfaNI	GCATC	1 cut(s)	137
SfuI	TTCGAA	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	32, 178
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	139
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	32, 178
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	160
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	160
XbaI	TCTAGA	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	273
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.