Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003791

Physical Location & Seq

Genomic Coordinates Forward (+)

55943860 .. 55952251

Gene Structure 8392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG409900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3888 bp

ATGACTTGTATCACATGTACAGAAAAGGGTCGTATTTTCCTGGCTGGGCGTGACGGCCACATCTATGAGTTACAGTATACAACTGGATCAGGCTGGCAATCAAGATGTCGGAAAGTTTGTCTGACTGCTGGTTTAGGAAGTATCATTTCAAGATGGGTAGTACCGAATGTTTTCAAGTTTGGAGCTGTTGATCCCATCATTGAAATGGTTTTTGATAATGAGAGACACATATTGTACGCAAGAACTGAAGAAATGAAACTTCAGGTTTTTATTCTGGGGCAAAATGCTGATGGGCCATTGAAAAAAGTGGCAGAAGAAAAAAATTTGATCAATCTGAGGGATGTTCATTATGGGGGCAGACAATCAACTGGACCTAGAGCTCCAAATCGAACGACAAAGTCATCTATAGTTTGCATATCACCATTGACTACTCTTGAATCGAAGTCTCTACACCTTGTTGCTGTTTTATCAGATGGGAGAAGGATGTACCTTACCACTTCTCCATCTAGTGGGAATTTGGGTGGATTTAATACAGACCATGACAAACCTAGTTGTTTAAAAGTTGTGACAACCAGGCCTTCTCCTCCTTTAGGGCTTAGTGGTGGACTTGCCTTTGGAACAATGTCTCTTGCTGGTAGACCTCAGAATGATGATCTCTCGCTAAAGGTTGAGGCAGCACATTATTCTGCTGGAACTCTTGTTCTTTCTGATTCATCTCCGCCAACAATGTCGTCTCTTCTTATTGTAAACCGTGACTCAAGCACGCAATCAGCTGGGTCGAGTACTCTGGGGACAAGTTCAAGGAGTTCTCGGGCATTACGGGAGTCTGTATCTTCTTTTCCAGTTGAAGGGCGAATGCTTTTTGTTGCAGATATATTACCCTTGCCTGATACTGCAACTGCCATACTGTCTTTGTATTCAGCAATTGAATATGGTGGATATGAAAGCCTAGAGGAGTCATGTGAGAAGGTATCTGGAAAGCTTTGGGCCAGAGGCGATCTTTCAATCCAACATATATTACCAAGGAGGCGATTTGTTGTTTTCAGTACTATGGGCATGATGGAAATAGTTTTCAACAGGCCTGTAGACATTCTGAGGAGGTTGTTTGAGTCCAACTCACCCAGGTCAATCTTGGAAGAATTCTTCAATCGTTTTGGACCTGGTGAAGCAGCTGCCATGTGTTTAATGCTAGCAGCCAGGGTAGTTCATTCGGAAAATCTTATAAGCAATGTTGTTGCTCAGAAGGCAGCTGAAGCTTTCGAGGACCCAAGATTTGTTGGAATGCCACAACTTGAGGGAAACAGTGCATTATCTAACACTAGAACAGCTGCGGGGGGATTTAGCATGGGGCAGGTTGTTCAGGAGGCTGAGCCTGTGTTTTCAGGTGCACATGAAGGGCTTTGTTTATGCTCTGCAAGGTTGCTTTTTCCTGTCTGGGAACTTCCTGTGGTGATTGTAAAAGGCAGTTTAGGTTCTACAAGCGCTATGTCAGAAAATGCGTTAGTCATCTGCAGGCTCTCTGTTGAGGCTATGCAAGTGCTTGAAAACAAGATTCGTTCACTAGAGAAGTTTCTAAGGTCTAGAAGGAACCAAAGGAGGGGCCTTTATGGCTGTGTTGCTGGTTCAGGAGACTTGACTGGCTCTATTCTTTATGGAGCCAGTTCAGAATTCGGTGCCAGTGACCACATGGTTAGAAACTTATTTGGTGCCTACTCACGGACTACTGAGTCTAATGCTGGTGGCTCATCTAGTAAAAGGCAGAGACTACCATATAGTCCTGCTGAACTGGCAGCCATGGAGGTCAGGGCCATGGAATGCATTAGGCAGTTGCTACTTCGATCTAGTGAAGCCCTGTTTCTGCTCCAGCTTCTTTCACAGCACCATGTAACTCGCTTGGTTGAGAGCTTTGATGCTGATCTACGACAAGCATTAGTTCGAATGACATTCCATCAGTTAGTTTGCTCTGAGGAAGGAGACCGTCTTGCTACAAGGCTCATATCTGCTCTAATGGAGTATTATACTGGTCCTGATGGCAGGGGTGCAGTAGATGATGTTAGTTCAAGGTTACGGGATGGTTGTCCAAGCTACTATAAGGAGTCTGATTACAAGTTTTTTCTAGCCGTGGAGTGTCTCGAGAGAGCTGCTGTACTTCCAGATCCTGTGGAGAAGGAGAATCTCGCAAGAAAAGCCTTTGATTACTTAAGTAAAGTTCCAGAATCTGCTGATTTACGAACTGTTTGCAAACGGTTTGAAGATTTAAGATTTTATGAAGCTGTGGTTTGCTTACCTTTACAAAAGGCACAGGCTCTTGACCCTGCGGGTGATGCTTTTAATGACCAAATTGATACAGCAGATCGAGAATATGCAGTTGCTCAACGTGTACAGTGTTATGAAATTATCATAAGTGCACTGCGTTCTCTGAAAGGTGACCCTTCACAGAGGGAGTTTGGTTCTCCTCTTAGGCGTGCTGCTGCACAGCCCGTCCTTGATCAGGTCTCTCGGAACAAGTATATATGCCAGATTGTTCAGCTTGGCATCCAATCTCCTGACAGATTATTTCATGAGTACTTGTACCGTGCTATGATTGATTTGGGACTTGAAAATGAGTTGTTGGAAAACGGAGGTCCTGATTTGGTACCTTTTTTACAAAGTGCTGCCCGTGAACATATACAAGAGGCTAGAGCTATTTCAGCAGTGACCTCCATGGCTTCTCCAATGGGACATTCTGTAACATCATCTAATCAAGCCAGATATTCTGAGCTTTTGGCACGGTACTATATCTTGAAGAGGCAGCATCTGCTTGCAGCTCACGTATTGTTACGACTGGCTGAGAGGCGATCCACTTCAGGGGATGTTCCTACTCTAGATGAAAGGTACAATTACTTGAAAAATGCAGTCATACAGGCAAAAAATGCTAGTAGTGATGGCCTGGTAGGTTCTGCACATGGTGCTTATGACAACGGGCTTTTAGACTTGTTGGAAGGAAAGCTTGCTGTTCTCCGTTTTCAGATAAAGATCAAACAGGAACTTGAGGCTTTAGTCTCCAGGGCAGAAGATTTGCCTGGTGCATCTGAGTCCCATGGAACTGACCCCAGTGGCACTTTAACAGCTGATTCCAATTTTGTAAATATTGCACGAGAAAAGGCTAAAGAGCTATCATTAGACTTGAAGGGTATAACTCAGCTATACAATGAGTATGCTGTTCCATTCGAACTTTGGGAGATATGTCTAGAAATGCTATACTTTGCGAGCTATTCTGGTGATCCAGATAGTAGCATTGTAAGAGAAACTTGGGCTAGATTAATCGACCAATCTCTTTCAAGGGGTGGTGTTGCCGAAGCTTGTTCAGTATTGAAGAGATTTGGTGCTGACATTTATCCTGGAGATGGAGCTGGCTTACCCTTAGACACACTTTGTCTTCACCTTGAGAAAGCTGCACTGGAAAGACAGGAATCAGGAGTTGAATCTGTTGGAGATGAAGATGTAGCAAGGGCTCTTCTTGCTGCTTGCAAGGGGGCAACCGAACCTGTACTGAACACATATGATCAGTTATTAACGAGTGGTGCTATTTTACCCTCGCCCAACCTCAGGCTACGCTTTCTCCGATCAGTACTTGTGATACTTCGTGAGTGGGCAATGTCCTTGTTTGCCCAGAGAATGGGTACAAGTAATACTGGAGCCTCTTTAATATTAGGTGGAACATTTTCAGGGGAGCAGAGAGCAGTTGTTAACCAAGGGGTTCGAGATAAGATCTCTAGTGCAGCCAACAGGTATATGACTGAGGTACGGAGGTTGGCTCTTCCACAGCATCTTACTGAACCTGTTTTTCAGGGGTTCCGAGAACTTGAAGAGTCGCTTTTAAGTCCCTTCCCTTTTGATCGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006998 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010256 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0017038 GO:0017056 GO:0030054 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044611 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0061024 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

1295

Amino Acids

142.33

Weight (kDa)

6.15

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoporin_N	PF08801	2 - 354	3.2e-40	Nup133 N terminal like
Nucleoporin_C	PF03177	461 - 1212	9.4e-67	Non-repetitive/WGA-negative nucleoporin C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14850
fragaria_vesca	FvH4_4g33560 FvH4_4g33560 FvH4_4g33560
malus_domestica	MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1
prunus_persica	Prupe.1G333300_v2.0.a1
pyrus_communis	pycom13g01720 pycom16g01690
rosa_chinensis	RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061
rosa_laevigata	RLG00000005957 RLG00000021689
rosa_multiflora	Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083800 Rroxscaffold_5G00383690
rosa_rugosa	Rorug04G0344100
rosa_samantha	Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800
rosa_wichuraiana	Rw2G049490 Rw4G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1223
AasI	GACNNNNNNGTC	1 cut(s)	1726
Acc36I	ACCTGC	1 cut(s)	1342
Acc65I	GGTACC	1 cut(s)	2635
AccB1I	GGYRCC	3 cut(s)	1673, 1706, 2635
AccB7I	CCANNNNNTGG	2 cut(s)	509, 3658
AccI	GTMKAC	3 cut(s)	77, 637, 1086
AciI	CCGC	3 cut(s)	719, 1331, 2318
AclWI	GGATC	5 cut(s)	94, 185, 2150, 2832, 3257
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	4 cut(s)	322, 514, 1139, 1667
AcuI	CTGAAG	4 cut(s)	245, 267, 1272, 2829
AdeI	CACNNNGTG	1 cut(s)	2948
AfeI	AGCGCT	1 cut(s)	1483
AflII	CTTAAG	1 cut(s)	2200
AflIII	ACRYGT	2 cut(s)	14, 2377
AjnI	CCWGG	9 cut(s)	39, 572, 1121, 1159, 1196, 2928, 3044, 3061, 3379
AjuI	GAANNNNNNNTTGG	2 cut(s)	2707, 2739
AloI	GAACNNNNNNTCC	2 cut(s)	684, 716
Alw21I	GWGCWC	3 cut(s)	382, 1390, 2410
Alw44I	GTGCAC	2 cut(s)	1386, 2406
AlwI	GGATC	5 cut(s)	94, 185, 2150, 2832, 3257
AlwNI	CAGNNNCTG	3 cut(s)	2159, 2219, 2797
Ama87I	CYCGRG	2 cut(s)	810, 2132
Aor51HI	AGCGCT	1 cut(s)	1483
AoxI	GGCC	8 cut(s)	55, 293, 575, 987, 1079, 1600, 1806, 2926
ApaLI	GTGCAC	2 cut(s)	1386, 2406
ApoI	RAATTY	4 cut(s)	322, 514, 1139, 1667
ArsI	GACNNNNNNTTYG	2 cut(s)	1256, 1288
AseI	ATTAAT	1 cut(s)	3302
Asp700I	GAANNNNTTC	2 cut(s)	170, 3703
Asp718I	GGTACC	1 cut(s)	2635
AspLEI	GCGC	1 cut(s)	1484
AspS9I	GGNCC	9 cut(s)	293, 371, 987, 1157, 1264, 1600, 1806, 2024, 2624
AsuHPI	GGTGA	8 cut(s)	411, 1110, 1175, 1462, 2333, 2438, 3272, 3413
AsuII	TTCGAA	2 cut(s)	1936, 3210
AsuNHI	GCTAGC	1 cut(s)	1189
AvaI	CYCGRG	2 cut(s)	810, 2132
AvaII	GGWCC	5 cut(s)	371, 1157, 1264, 2024, 2624
AxyI	CCTNAGG	1 cut(s)	3587
BaeGI	GKGCMC	2 cut(s)	1390, 2410
BaeI	ACNNNNGTAYC	2 cut(s)	3776, 3809
BanI	GGYRCC	3 cut(s)	1673, 1706, 2635
BanII	GRGCYC	2 cut(s)	382, 3496
BauI	CACGAG	1 cut(s)	3135
BbsI	GAAGAC	1 cut(s)	3410
Bbv12I	GWGCWC	3 cut(s)	382, 1390, 2410
BceAI	ACGGC	2 cut(s)	70, 2105
BcgI	CGANNNNNNTGC	4 cut(s)	2123, 2157, 2220, 2254
BciT130I	CCWGG	9 cut(s)	41, 574, 1123, 1161, 1198, 2930, 3046, 3063, 3381
BclI	TGATCA	3 cut(s)	327, 2488, 3544
BfmI	CTRYAG	3 cut(s)	405, 1083, 1510
BfoI	RGCGCY	1 cut(s)	1485
BfrI	CTTAAG	1 cut(s)	2200
BfuAI	ACCTGC	1 cut(s)	1342
BglI	GCCNNNNNGGC	1 cut(s)	1608
BglII	AGATCT	1 cut(s)	3750
BlpI	GCTNAGC	1 cut(s)	1368
BmcAI	AGTACT	4 cut(s)	784, 1048, 2567, 3612
Bme1390I	CCNGG	9 cut(s)	41, 574, 1123, 1161, 1198, 2930, 3046, 3063, 3381
Bme18I	GGWCC	5 cut(s)	371, 1157, 1264, 2024, 2624
BmeT110I	CYCGRG	2 cut(s)	810, 2132
BmgT120I	GGNCC	9 cut(s)	293, 371, 987, 1157, 1264, 1600, 1806, 2024, 2624
BmiI	GGNNCC	9 cut(s)	1266, 1589, 1601, 1657, 1675, 1708, 2637, 3679, 3836
BmrFI	CCNGG	9 cut(s)	41, 574, 1123, 1161, 1198, 2930, 3046, 3063, 3381
BmrI	ACTGGG	1 cut(s)	3087
BmsI	GCATC	6 cut(s)	1900, 2314, 2544, 2803, 3077, 3817
BmtI	GCTAGC	1 cut(s)	1193
BmuI	ACTGGG	1 cut(s)	3087
BpiI	GAAGAC	1 cut(s)	3410
BplI	GAGNNNNNCTC	4 cut(s)	1100, 1132, 3781, 3813
BpmI	CTGGAG	4 cut(s)	1847, 3028, 3402, 3696
Bpu1102I	GCTNAGC	1 cut(s)	1368
Bpu14I	TTCGAA	2 cut(s)	1936, 3210
BpuEI	CTTGAG	4 cut(s)	742, 1313, 3050, 3446
BsaAI	YACGTR	1 cut(s)	2812
BsaBI	GATNNNNATC	2 cut(s)	1914, 3014
BsaI	GGTCTC	2 cut(s)	1968, 2500
BsaXI	ACNNNNNCTCC	4 cut(s)	484, 514, 3585, 3615
Bse21I	CCTNAGG	1 cut(s)	3587
Bse3DI	GCAATG	2 cut(s)	1234, 3642
Bse8I	GATNNNNATC	2 cut(s)	1914, 3014
BseBI	CCWGG	9 cut(s)	41, 574, 1123, 1161, 1198, 2930, 3046, 3063, 3381
BseGI	GGATG	5 cut(s)	346, 489, 2077, 2535, 2857
BseJI	GATNNNNATC	2 cut(s)	1914, 3014
BseMI	GCAATG	2 cut(s)	1234, 3642
BseRI	GAGGAG	4 cut(s)	573, 968, 1111, 2445
BseSI	GKGCMC	2 cut(s)	1390, 2410
BseYI	CCCAGC	2 cut(s)	44, 773
BsgI	GTGCAG	5 cut(s)	2061, 2457, 2925, 3420, 3780
BshFI	GGCC	8 cut(s)	57, 295, 577, 989, 1081, 1602, 1808, 2928
BshNI	GGYRCC	3 cut(s)	1673, 1706, 2635
BsiHKAI	GWGCWC	3 cut(s)	382, 1390, 2410
BsiHKCI	CYCGRG	2 cut(s)	810, 2132
BslFI	GGGAC	5 cut(s)	805, 2607, 2733, 3061, 3849
BsmBI	CGTCTC	1 cut(s)	738
BsmFI	GGGAC	5 cut(s)	805, 2607, 2733, 3061, 3849
BsmI	GAATGC	3 cut(s)	861, 1287, 1820
BsnI	GGCC	8 cut(s)	57, 295, 577, 989, 1081, 1602, 1808, 2928
Bso31I	GGTCTC	2 cut(s)	1968, 2500
BsoBI	CYCGRG	2 cut(s)	810, 2132
Bsp119I	TTCGAA	2 cut(s)	1936, 3210
Bsp1286I	GDGCHC	4 cut(s)	382, 1390, 2410, 3496
Bsp1407I	TGTACA	2 cut(s)	17, 2380
Bsp1720I	GCTNAGC	1 cut(s)	1368
Bsp19I	CCATGG	4 cut(s)	1794, 1809, 2703, 3079
BspACI	CCGC	3 cut(s)	719, 1331, 2318
BspANI	GGCC	8 cut(s)	57, 295, 577, 989, 1081, 1602, 1808, 2928
BspHI	TCATGA	1 cut(s)	2560
BspLI	GGNNCC	9 cut(s)	1266, 1589, 1601, 1657, 1675, 1708, 2637, 3679, 3836
BspMAI	CTGCAG	1 cut(s)	1514
BspMI	ACCTGC	1 cut(s)	1342
BspOI	GCTAGC	1 cut(s)	1193
BspPI	GGATC	5 cut(s)	94, 185, 2150, 2832, 3257
BspQI	GCTCTTC	2 cut(s)	3501, 3804
BspT104I	TTCGAA	2 cut(s)	1936, 3210
BspT107I	GGYRCC	3 cut(s)	1673, 1706, 2635
BspTI	CTTAAG	1 cut(s)	2200
BspTNI	GGTCTC	2 cut(s)	1968, 2500
BsrDI	GCAATG	2 cut(s)	1234, 3642
BsrGI	TGTACA	2 cut(s)	17, 2380
BssNAI	GTATAC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	3135
BssT1I	CCWWGG	6 cut(s)	1022, 1794, 1809, 2703, 3079, 3733
Bst1107I	GTATAC	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	3135
Bst2UI	CCWGG	9 cut(s)	41, 574, 1123, 1161, 1198, 2930, 3046, 3063, 3381
Bst6I	CTCTTC	6 cut(s)	741, 2780, 3350, 3501, 3804, 3843
BstAFI	CTTAAG	1 cut(s)	2200
BstAPI	GCANNNNNTGC	3 cut(s)	2797, 2912, 2948
BstAUI	TGTACA	2 cut(s)	17, 2380
BstBAI	YACGTR	1 cut(s)	2812
BstBI	TTCGAA	2 cut(s)	1936, 3210
BstDSI	CCRYGG	5 cut(s)	1794, 1809, 2121, 2703, 3079
BstEII	GGTNACC	1 cut(s)	2426
BstENI	CCTNNNNNAGG	2 cut(s)	588, 2489
BstF5I	GGATG	5 cut(s)	346, 489, 2077, 2535, 2857
BstH2I	RGCGCY	1 cut(s)	1485
BstHHI	GCGC	1 cut(s)	1484
BstNI	CCWGG	9 cut(s)	41, 574, 1123, 1161, 1198, 2930, 3046, 3063, 3381
BstNSI	RCATGY	1 cut(s)	18
BstPI	GGTNACC	1 cut(s)	2426
BstSCI	CCNGG	9 cut(s)	39, 572, 1121, 1159, 1196, 2928, 3044, 3061, 3379
BstSFI	CTRYAG	3 cut(s)	405, 1083, 1510
BstSLI	GKGCMC	2 cut(s)	1390, 2410
BstV2I	GAAGAC	1 cut(s)	3410
BstX2I	RGATCY	2 cut(s)	2155, 3750
BstYI	RGATCY	2 cut(s)	2155, 3750
BstZ17I	GTATAC	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	3587
BsuRI	GGCC	8 cut(s)	57, 295, 577, 989, 1081, 1602, 1808, 2928
BtgI	CCRYGG	5 cut(s)	1794, 1809, 2121, 2703, 3079
BtsCI	GGATG	5 cut(s)	346, 489, 2077, 2535, 2857
BtsI	GCAGTG	2 cut(s)	2408, 2700
BtsIMutI	CAGTG	7 cut(s)	1309, 1684, 2390, 2408, 2700, 3100, 3437
BveI	ACCTGC	1 cut(s)	1342
CaiI	CAGNNNCTG	3 cut(s)	2159, 2219, 2797
CciI	TCATGA	1 cut(s)	2560
CfoI	GCGC	1 cut(s)	1484
Cfr13I	GGNCC	9 cut(s)	293, 371, 987, 1157, 1264, 1600, 1806, 2024, 2624
CsiI	ACCWGGT	1 cut(s)	1159
DraI	TTTAAA	1 cut(s)	558
DraIII	CACNNNGTG	1 cut(s)	2948
DrdI	GACNNNNNNGTC	1 cut(s)	1726
DseDI	GACNNNNNNGTC	1 cut(s)	1726
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	6 cut(s)	741, 2780, 3350, 3501, 3804, 3843
EarI	CTCTTC	6 cut(s)	741, 2780, 3350, 3501, 3804, 3843
EciI	GGCGGA	1 cut(s)	708
Ecl136II	GAGCTC	1 cut(s)	380
Eco130I	CCWWGG	6 cut(s)	1022, 1794, 1809, 2703, 3079, 3733
Eco147I	AGGCCT	2 cut(s)	577, 1081
Eco24I	GRGCYC	2 cut(s)	382, 3496
Eco31I	GGTCTC	2 cut(s)	1968, 2500
Eco47I	GGWCC	5 cut(s)	371, 1157, 1264, 2024, 2624
Eco47III	AGCGCT	1 cut(s)	1483
Eco53kI	GAGCTC	1 cut(s)	380
Eco57I	CTGAAG	4 cut(s)	245, 267, 1272, 2829
Eco81I	CCTNAGG	1 cut(s)	3587
Eco88I	CYCGRG	2 cut(s)	810, 2132
Eco91I	GGTNACC	1 cut(s)	2426
EcoICRI	GAGCTC	1 cut(s)	380
EcoNI	CCTNNNNNAGG	2 cut(s)	588, 2489
EcoO109I	RGGNCCY	3 cut(s)	1264, 1600, 2624
EcoO65I	GGTNACC	1 cut(s)	2426
EcoRI	GAATTC	2 cut(s)	1139, 1667
EcoRII	CCWGG	9 cut(s)	39, 572, 1121, 1159, 1196, 2928, 3044, 3061, 3379
EcoT14I	CCWWGG	6 cut(s)	1022, 1794, 1809, 2703, 3079, 3733
EcoT22I	ATGCAT	1 cut(s)	1820
EcoT38I	GRGCYC	2 cut(s)	382, 3496
ErhI	CCWWGG	6 cut(s)	1022, 1794, 1809, 2703, 3079, 3733
Esp3I	CGTCTC	1 cut(s)	738
FalI	AAGNNNNNCTT	6 cut(s)	2973, 3005, 3274, 3306, 3840, 3872
FaqI	GGGAC	5 cut(s)	805, 2607, 2733, 3061, 3849
FauI	CCCGC	2 cut(s)	1324, 2311
FauNDI	CATATG	1 cut(s)	3541
FbaI	TGATCA	3 cut(s)	327, 2488, 3544
FblI	GTMKAC	3 cut(s)	77, 637, 1086
FokI	GGATG	5 cut(s)	353, 496, 2084, 2522, 2864
FriOI	GRGCYC	2 cut(s)	382, 3496
GlaI	GCGC	1 cut(s)	1483
GsaI	CCCAGC	2 cut(s)	48, 777
GsuI	CTGGAG	4 cut(s)	1847, 3028, 3402, 3696
HaeII	RGCGCY	1 cut(s)	1485
HaeIII	GGCC	8 cut(s)	57, 295, 577, 989, 1081, 1602, 1808, 2928
HhaI	GCGC	1 cut(s)	1484
Hin6I	GCGC	1 cut(s)	1482
HinP1I	GCGC	1 cut(s)	1482
HincII	GTYRAC	1 cut(s)	3730
HindII	GTYRAC	1 cut(s)	3730
HindIII	AAGCTT	4 cut(s)	980, 1254, 2987, 3339
HpaI	GTTAAC	1 cut(s)	3730
HphI	GGTGA	8 cut(s)	411, 1110, 1175, 1462, 2333, 2438, 3272, 3413
HpyCH4IV	ACGT	2 cut(s)	2377, 2811
HpySE526I	ACGT	2 cut(s)	2377, 2811
HspAI	GCGC	1 cut(s)	1482
KpnI	GGTACC	1 cut(s)	2639
Ksp22I	TGATCA	3 cut(s)	327, 2488, 3544
KspAI	GTTAAC	1 cut(s)	3730
LguI	GCTCTTC	2 cut(s)	3501, 3804
LmnI	GCTCC	7 cut(s)	182, 385, 1655, 1866, 3389, 3677, 3712
LweI	GCATC	6 cut(s)	1900, 2314, 2544, 2803, 3077, 3817
MabI	ACCWGGT	1 cut(s)	1159
MaeII	ACGT	2 cut(s)	2377, 2811
MfeI	CAATTG	1 cut(s)	924
MflI	RGATCY	2 cut(s)	2155, 3750
MhlI	GDGCHC	4 cut(s)	382, 1390, 2410, 3496
MluCI	AATT	9 cut(s)	322, 514, 924, 1139, 1667, 2340, 2394, 2878, 3118
MlyI	GAGTC	8 cut(s)	749, 833, 965, 1118, 1736, 2105, 3083, 3860
MmeI	TCCRAC	7 cut(s)	89, 1033, 1137, 1258, 2592, 2958, 3451
Mph1103I	ATGCAT	1 cut(s)	1820
MroXI	GAANNNNTTC	2 cut(s)	170, 3703
MslI	CAYNNNNRTG	2 cut(s)	63, 203
MspA1I	CMGCKG	5 cut(s)	773, 1172, 1250, 1328, 3110
MspCI	CTTAAG	1 cut(s)	2200
MspR9I	CCNGG	9 cut(s)	41, 574, 1123, 1161, 1198, 2930, 3046, 3063, 3381
MunI	CAATTG	1 cut(s)	924
Mva1269I	GAATGC	3 cut(s)	861, 1287, 1820
MvaI	CCWGG	9 cut(s)	41, 574, 1123, 1161, 1198, 2930, 3046, 3063, 3381
NcoI	CCATGG	4 cut(s)	1794, 1809, 2703, 3079
NdeI	CATATG	1 cut(s)	3541
NheI	GCTAGC	1 cut(s)	1189
NlaIV	GGNNCC	9 cut(s)	1266, 1589, 1601, 1657, 1675, 1708, 2637, 3679, 3836
NmuCI	GTSAC	6 cut(s)	50, 565, 752, 1679, 2426, 2695
NsiI	ATGCAT	1 cut(s)	1820
NspI	RCATGY	1 cut(s)	18
NspV	TTCGAA	2 cut(s)	1936, 3210
PaeR7I	CTCGAG	1 cut(s)	2132
PagI	TCATGA	1 cut(s)	2560
PceI	AGGCCT	2 cut(s)	577, 1081
PciI	ACATGT	1 cut(s)	14
PciSI	GCTCTTC	2 cut(s)	3501, 3804
PcsI	WCGNNNNNNNCGW	1 cut(s)	3601
PctI	GAATGC	3 cut(s)	861, 1287, 1820
PdmI	GAANNNNTTC	2 cut(s)	170, 3703
PfeI	GAWTC	8 cut(s)	437, 710, 1552, 2173, 2216, 3113, 3452, 3464
PflFI	GACNNNGTC	1 cut(s)	397
PflMI	CCANNNNNTGG	2 cut(s)	509, 3658
PfoI	TCCNGGA	1 cut(s)	3379
PleI	GAGTC	8 cut(s)	749, 832, 964, 1117, 1735, 2104, 3082, 3859
PpsI	GAGTC	8 cut(s)	749, 832, 964, 1117, 1735, 2104, 3082, 3859
Ppu21I	YACGTR	1 cut(s)	2812
PpuMI	RGGWCCY	2 cut(s)	1264, 2624
PscI	ACATGT	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	3302
PsiI	TTATAA	1 cut(s)	1223
Psp124BI	GAGCTC	1 cut(s)	382
Psp5II	RGGWCCY	2 cut(s)	1264, 2624
Psp6I	CCWGG	9 cut(s)	39, 572, 1121, 1159, 1196, 2928, 3044, 3061, 3379
PspEI	GGTNACC	1 cut(s)	2426
PspFI	CCCAGC	2 cut(s)	44, 773
PspGI	CCWGG	9 cut(s)	39, 572, 1121, 1159, 1196, 2928, 3044, 3061, 3379
PspN4I	GGNNCC	9 cut(s)	1266, 1589, 1601, 1657, 1675, 1708, 2637, 3679, 3836
PspPI	GGNCC	9 cut(s)	293, 371, 987, 1157, 1264, 1600, 1806, 2024, 2624
PspPPI	RGGWCCY	2 cut(s)	1264, 2624
PstI	CTGCAG	1 cut(s)	1514
PstNI	CAGNNNCTG	3 cut(s)	2159, 2219, 2797
PsuI	RGATCY	2 cut(s)	2155, 3750
PsyI	GACNNNGTC	1 cut(s)	397
PvuII	CAGCTG	5 cut(s)	773, 1172, 1250, 1328, 3110
RseI	CAYNNNNRTG	2 cut(s)	63, 203
SacI	GAGCTC	1 cut(s)	382
SapI	GCTCTTC	2 cut(s)	3501, 3804
Sau96I	GGNCC	9 cut(s)	293, 371, 987, 1157, 1264, 1600, 1806, 2024, 2624
ScaI	AGTACT	4 cut(s)	784, 1048, 2567, 3612
SchI	GAGTC	8 cut(s)	749, 833, 965, 1118, 1736, 2105, 3083, 3860
ScrFI	CCNGG	9 cut(s)	41, 574, 1123, 1161, 1198, 2930, 3046, 3063, 3381
SduI	GDGCHC	4 cut(s)	382, 1390, 2410, 3496
SexAI	ACCWGGT	1 cut(s)	1159
SfaNI	GCATC	6 cut(s)	1900, 2314, 2544, 2803, 3077, 3817
SfcI	CTRYAG	3 cut(s)	405, 1083, 1510
Sfr274I	CTCGAG	1 cut(s)	2132
SfuI	TTCGAA	2 cut(s)	1936, 3210
SinI	GGWCC	5 cut(s)	371, 1157, 1264, 2024, 2624
SlaI	CTCGAG	1 cut(s)	2132
SmiMI	CAYNNNNRTG	2 cut(s)	63, 203
SmlI	CTYRAG	6 cut(s)	757, 1292, 2132, 2200, 3029, 3425
SmoI	CTYRAG	6 cut(s)	757, 1292, 2132, 2200, 3029, 3425
Sse9I	AATT	9 cut(s)	322, 514, 924, 1139, 1667, 2340, 2394, 2878, 3118
SseBI	AGGCCT	2 cut(s)	577, 1081
SsiI	CCGC	3 cut(s)	719, 1331, 2318
SspI	AATATT	2 cut(s)	3130, 3690
SstI	GAGCTC	1 cut(s)	382
StuI	AGGCCT	2 cut(s)	577, 1081
StyD4I	CCNGG	9 cut(s)	39, 572, 1121, 1159, 1196, 2928, 3044, 3061, 3379
StyI	CCWWGG	6 cut(s)	1022, 1794, 1809, 2703, 3079, 3733
TaiI	ACGT	2 cut(s)	2380, 2814
TasI	AATT	9 cut(s)	322, 514, 924, 1139, 1667, 2340, 2394, 2878, 3118
TatI	WGTACW	8 cut(s)	17, 782, 1046, 2146, 2380, 2565, 3529, 3610
TfiI	GAWTC	8 cut(s)	437, 710, 1552, 2173, 2216, 3113, 3452, 3464
TscAI	CASTG	7 cut(s)	1309, 1684, 2390, 2415, 2700, 3100, 3444
TseFI	GTSAC	6 cut(s)	50, 565, 752, 1679, 2426, 2695
Tsp45I	GTSAC	6 cut(s)	50, 565, 752, 1679, 2426, 2695
TspGWI	ACGGA	4 cut(s)	1732, 2634, 2990, 3802
TspRI	CASTG	7 cut(s)	1309, 1684, 2390, 2415, 2700, 3100, 3444
Tth111I	GACNNNGTC	1 cut(s)	397
Van91I	CCANNNNNTGG	2 cut(s)	509, 3658
Vha464I	CTTAAG	1 cut(s)	2200
VneI	GTGCAC	2 cut(s)	1386, 2406
VpaK11BI	GGWCC	5 cut(s)	371, 1157, 1264, 2024, 2624
VspI	ATTAAT	1 cut(s)	3302
XagI	CCTNNNNNAGG	2 cut(s)	588, 2489
XapI	RAATTY	4 cut(s)	322, 514, 1139, 1667
XbaI	TCTAGA	3 cut(s)	1580, 2863, 3229
XceI	RCATGY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	4 cut(s)	202, 1129, 1684, 3213
XhoI	CTCGAG	1 cut(s)	2132
XmiI	GTMKAC	3 cut(s)	77, 637, 1086
XmnI	GAANNNNTTC	2 cut(s)	170, 3703
ZrmI	AGTACT	4 cut(s)	784, 1048, 2567, 3612
Zsp2I	ATGCAT	1 cut(s)	1820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.