Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007968.1

Orthogroup ID

OG0003791

Physical Location & Seq

Genomic Coordinates Reverse (-)

76266 .. 78139

Gene Structure 1874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007968.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ctggtaggttctgcacatggtgcttatgacaacgggcttttagaattgttggaaggaaagcttgctgttctccgttttcagataaagatcaaacaggaacttgaggctttagtctccagcgcagaagatttgcctggtgcatctgagtcccatggaactgaccccagtggcactttaactgctgattccaattttgtaaatattgcacgagaaaaggctaaagagctgtcattagacttgaagagtataactcagctatacaatgagtatgctgttccattcgaactttgggagatatgtctagaaatgctatactttgcgagctattctggtgatccagatagtagcatggtaagagaaacttgggctagattaatcgaccaatctctttcaaggggtggtgttgccgaagcttgttcagtattgaagagatttggtgctgacatttatcctggagatggagctggcttacccttagacactctttgccgtcaccttgaaaaagcagcactggaaagacaggaatcaggagttgaatctgttggagatgaagatgtagcaagggctcttcttgctgcttgcaagggtgcaactgagcctgtactgaacacatatgatcagttattaatgagtggtgctattttaccctcgcccaacctcaggctacgccttctccgatcagtactcgtgatacttcgtgagtgggcaatgtcattgtttgcccagagaatgggtacaagtaatactggagcctctttaatattaggtggaacattttcaggggagcagagagcagttgttaaccaaggggttcgagataagatctctagtgcagccaacaggtatatgactgaggtacggaggttggctcttccacagcatcttactgaacctgtttttcaggggttccgagaacttgaagagtcgcttttaagtcccttcccttttgatcgttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006998 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010256 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0017038 GO:0017056 GO:0030054 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044611 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0061024 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

319

Amino Acids

34.92

Weight (kDa)

4.95

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14850
fragaria_vesca	FvH4_4g33560 FvH4_4g33560 FvH4_4g33560
malus_domestica	MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1
prunus_persica	Prupe.1G333300_v2.0.a1
pyrus_communis	pycom13g01720 pycom16g01690
rosa_chinensis	RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061
rosa_laevigata	RLG00000005957 RLG00000021689
rosa_multiflora	Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083800 Rroxscaffold_5G00383690
rosa_rugosa	Rorug04G0344100
rosa_samantha	Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800
rosa_wichuraiana	Rw2G049490 Rw4G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	730
AclWI	GGATC	1 cut(s)	329
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	4 cut(s)	603, 684, 736, 858
AfiI	CCNNNNNNNGG	3 cut(s)	458, 660, 730
AgsI	TTSAA	6 cut(s)	241, 393, 427, 500, 536, 920
AjnI	CCWGG	2 cut(s)	133, 451
AluBI	AGCT	6 cut(s)	61, 226, 256, 324, 413, 464
AluI	AGCT	6 cut(s)	61, 226, 256, 324, 413, 464
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	329
ApeKI	GCWGC	3 cut(s)	506, 575, 833
AseI	ATTAAT	2 cut(s)	374, 626
Asp700I	GAANNNNTTC	1 cut(s)	775
AspLEI	GCGC	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	344, 485
AsuII	TTCGAA	1 cut(s)	282
AxyI	CCTNAGG	1 cut(s)	659
BaeI	ACNNNNGTAYC	2 cut(s)	848, 881
BanII	GRGCYC	1 cut(s)	568
BauI	CACGAG	2 cut(s)	207, 686
BbvI	GCAGC	3 cut(s)	518, 562, 845
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	1 cut(s)	474
BciT130I	CCWGG	2 cut(s)	135, 453
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	3 cut(s)	302, 369, 828
BglII	AGATCT	1 cut(s)	822
BisI	GCNGC	3 cut(s)	507, 576, 834
BlsI	GCNGC	3 cut(s)	508, 577, 835
BmcAI	AGTACT	1 cut(s)	684
Bme1390I	CCNGG	2 cut(s)	135, 453
BmiI	GGNNCC	2 cut(s)	751, 908
BmrFI	CCNGG	2 cut(s)	135, 453
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	2 cut(s)	149, 889
BmuI	ACTGGG	1 cut(s)	159
BplI	GAGNNNNNCTC	4 cut(s)	235, 267, 853, 885
BpmI	CTGGAG	3 cut(s)	100, 474, 768
Bpu14I	TTCGAA	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	151, 805
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	3 cut(s)	458, 660, 730
Bse1I	ACTGG	3 cut(s)	165, 516, 751
Bse21I	CCTNAGG	1 cut(s)	659
Bse3DI	GCAATG	1 cut(s)	714
Bse8I	GATNNNNATC	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	135, 453
BseDI	CCNNGG	2 cut(s)	151, 805
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	3 cut(s)	458, 660, 730
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	5 cut(s)	135, 266, 585, 673, 843
BseNI	ACTGG	3 cut(s)	165, 516, 751
BseXI	GCAGC	3 cut(s)	518, 562, 845
BsgI	GTGCAG	1 cut(s)	852
BslFI	GGGAC	2 cut(s)	133, 921
BslI	CCNNNNNNNGG	3 cut(s)	458, 660, 730
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	2 cut(s)	133, 921
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	6 cut(s)	87, 334, 616, 677, 822, 949
Bsp19I	CCATGG	1 cut(s)	151
BspCNI	CTCAG	5 cut(s)	136, 265, 586, 672, 844
BspLI	GGNNCC	2 cut(s)	751, 908
BspPI	GGATC	1 cut(s)	329
BspQI	GCTCTTC	2 cut(s)	573, 876
BspT104I	TTCGAA	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	714
BsrI	ACTGG	3 cut(s)	165, 516, 751
BssECI	CCNNGG	2 cut(s)	151, 805
BssMI	GATC	6 cut(s)	87, 334, 616, 677, 822, 949
BssSI	CACGAG	2 cut(s)	207, 686
BssT1I	CCWWGG	2 cut(s)	151, 805
Bst2BI	CACGAG	2 cut(s)	207, 686
Bst2UI	CCWGG	2 cut(s)	135, 453
Bst6I	CTCTTC	5 cut(s)	236, 422, 573, 876, 915
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	282
BstC8I	GCNNGC	4 cut(s)	63, 322, 466, 580
BstDEI	CTNAG	6 cut(s)	144, 252, 475, 594, 659, 852
BstDSI	CCRYGG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	6 cut(s)	90, 337, 619, 680, 825, 952
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	6 cut(s)	87, 334, 616, 677, 822, 949
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 572
BstNI	CCWGG	2 cut(s)	135, 453
BstSCI	CCNGG	2 cut(s)	133, 451
BstV1I	GCAGC	3 cut(s)	518, 562, 845
BstX2I	RGATCY	1 cut(s)	822
BstYI	RGATCY	1 cut(s)	822
Bsu36I	CCTNAGG	1 cut(s)	659
BtgI	CCRYGG	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	172, 509
Cac8I	GCNNGC	4 cut(s)	63, 322, 466, 580
CfoI	GCGC	1 cut(s)	122
Csp6I	GTAC	4 cut(s)	602, 683, 735, 857
CviAII	CATG	3 cut(s)	17, 152, 349
CviQI	GTAC	4 cut(s)	602, 683, 735, 857
DdeI	CTNAG	6 cut(s)	144, 252, 475, 594, 659, 852
DpnI	GATC	6 cut(s)	89, 336, 618, 679, 824, 951
DpnII	GATC	6 cut(s)	87, 334, 616, 677, 822, 949
DraIII	CACNNNGTG	1 cut(s)	20
Eam1104I	CTCTTC	5 cut(s)	236, 422, 573, 876, 915
EarI	CTCTTC	5 cut(s)	236, 422, 573, 876, 915
Eco130I	CCWWGG	2 cut(s)	151, 805
Eco24I	GRGCYC	1 cut(s)	568
Eco81I	CCTNAGG	1 cut(s)	659
EcoRII	CCWGG	2 cut(s)	133, 451
EcoT14I	CCWWGG	2 cut(s)	151, 805
EcoT38I	GRGCYC	1 cut(s)	568
ErhI	CCWWGG	2 cut(s)	151, 805
FaeI	CATG	3 cut(s)	20, 155, 352
FalI	AAGNNNNNCTT	6 cut(s)	45, 77, 346, 378, 912, 944
FaqI	GGGAC	2 cut(s)	133, 921
FatI	CATG	3 cut(s)	16, 151, 348
FauNDI	CATATG	1 cut(s)	613
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	507, 576, 834
FriOI	GRGCYC	1 cut(s)	568
Fsp4HI	GCNGC	3 cut(s)	507, 576, 834
FspBI	CTAG	3 cut(s)	302, 369, 828
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	3 cut(s)	507, 576, 834
GsuI	CTGGAG	3 cut(s)	100, 474, 768
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	20, 155, 352
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	2 cut(s)	59, 411
HinfI	GANTC	5 cut(s)	146, 185, 524, 536, 923
HpaI	GTTAAC	1 cut(s)	802
HphI	GGTGA	2 cut(s)	344, 485
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	4 cut(s)	81, 145, 677, 911
Hpy188III	TCNNGA	6 cut(s)	302, 338, 528, 688, 698, 815
Hpy8I	GTNNAC	1 cut(s)	802
HpyAV	CCTTC	3 cut(s)	47, 680, 949
HpyCH4V	TGCA	6 cut(s)	14, 140, 206, 582, 590, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 572
HpyF3I	CTNAG	6 cut(s)	144, 252, 475, 594, 659, 852
Hsp92II	CATG	3 cut(s)	20, 155, 352
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	616
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	6 cut(s)	87, 334, 616, 677, 822, 949
LguI	GCTCTTC	2 cut(s)	573, 876
LmnI	GCTCC	3 cut(s)	461, 749, 784
Lsp1109I	GCAGC	3 cut(s)	518, 562, 845
LweI	GCATC	2 cut(s)	149, 889
MaeI	CTAG	3 cut(s)	302, 369, 828
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	6 cut(s)	89, 336, 618, 679, 824, 951
MboI	GATC	6 cut(s)	87, 334, 616, 677, 822, 949
MboII	GAAGA	7 cut(s)	137, 253, 439, 560, 563, 863, 932
MflI	RGATCY	1 cut(s)	822
MhlI	GDGCHC	1 cut(s)	568
MluCI	AATT	2 cut(s)	44, 190
MlyI	GAGTC	2 cut(s)	155, 932
MmeI	TCCRAC	2 cut(s)	30, 523
MnlI	CCTC	6 cut(s)	97, 658, 668, 763, 847, 855
MroXI	GAANNNNTTC	1 cut(s)	775
MseI	TTAA	6 cut(s)	176, 374, 626, 758, 801, 932
MspR9I	CCNGG	2 cut(s)	135, 453
MvaI	CCWGG	2 cut(s)	135, 453
MwoI	GCNNNNNNNGC	2 cut(s)	20, 572
NcoI	CCATGG	1 cut(s)	151
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	6 cut(s)	87, 334, 616, 677, 822, 949
NlaIII	CATG	3 cut(s)	20, 155, 352
NlaIV	GGNNCC	2 cut(s)	751, 908
NmuCI	GTSAC	1 cut(s)	491
NspV	TTCGAA	1 cut(s)	282
PciSI	GCTCTTC	2 cut(s)	573, 876
PcsI	WCGNNNNNNNCGW	1 cut(s)	673
PdmI	GAANNNNTTC	1 cut(s)	775
PfeI	GAWTC	3 cut(s)	185, 524, 536
PflMI	CCANNNNNTGG	1 cut(s)	730
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	3 cut(s)	508, 577, 835
PleI	GAGTC	2 cut(s)	154, 931
PpsI	GAGTC	2 cut(s)	154, 931
PshBI	ATTAAT	2 cut(s)	374, 626
Psp6I	CCWGG	2 cut(s)	133, 451
PspGI	CCWGG	2 cut(s)	133, 451
PspN4I	GGNNCC	2 cut(s)	751, 908
PsuI	RGATCY	1 cut(s)	822
RsaI	GTAC	4 cut(s)	603, 684, 736, 858
RsaNI	GTAC	4 cut(s)	602, 683, 735, 857
SapI	GCTCTTC	2 cut(s)	573, 876
SaqAI	TTAA	6 cut(s)	176, 374, 626, 758, 801, 932
SatI	GCNGC	3 cut(s)	507, 576, 834
Sau3AI	GATC	6 cut(s)	87, 334, 616, 677, 822, 949
ScaI	AGTACT	1 cut(s)	684
SchI	GAGTC	2 cut(s)	155, 932
ScrFI	CCNGG	2 cut(s)	135, 453
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	2 cut(s)	149, 889
SfuI	TTCGAA	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	44, 190
SspI	AATATT	2 cut(s)	202, 762
SspMI	CTAG	3 cut(s)	302, 369, 828
StyD4I	CCNGG	2 cut(s)	133, 451
StyI	CCWWGG	2 cut(s)	151, 805
TaqI	TCGA	3 cut(s)	282, 378, 814
TasI	AATT	2 cut(s)	44, 190
TatI	WGTACW	2 cut(s)	601, 682
TfiI	GAWTC	3 cut(s)	185, 524, 536
Tru1I	TTAA	6 cut(s)	176, 374, 626, 758, 801, 932
Tru9I	TTAA	6 cut(s)	176, 374, 626, 758, 801, 932
TscAI	CASTG	2 cut(s)	172, 516
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	3 cut(s)	506, 575, 833
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	1 cut(s)	564
TspGWI	ACGGA	2 cut(s)	62, 874
TspRI	CASTG	2 cut(s)	172, 516
Van91I	CCANNNNNTGG	1 cut(s)	730
VspI	ATTAAT	2 cut(s)	374, 626
XbaI	TCTAGA	1 cut(s)	301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	775
XspI	CTAG	3 cut(s)	302, 369, 828
ZrmI	AGTACT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.