pycom16g01690

Nuclear pore complex protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
1041386 .. 1043139
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g01690.3

Sequence Viewer

Length: 1422 bp
ATGCTTTCTGTAGCAGATGTTTTCCCCTTGCCTGATACTGCAACAACTGTACTGTCCCTATATTCAGAAATCGAATACGGTGGATATGAAGGCTTGGATGAGTCCTGTGAAAAGGTATCTGGAAAGCTTTGGGCCAGAGGAGACCTTTCAATCCAACATATAATGCCAAGGAGGTGCGTTGTTGTTTTCAGTACTATGGGAATGACGGAAATAGTTTTCAATAGACCTGTGGACATTCTGAGGAGGTTTTTTGAGGCCAACACCCCCAGGTCAATCTTAGAAGAATTCTTCAATCGTTTTGGAGCTAGTGAGGCTGCTGCAATGTGTCTAATGCTTGCAGCTAGGATAGTACATTCAGAAACTCTTGTAAGTAATGTTGTTGCACAGAAGGCGGCTGAAGCTTTTGAAGACCCAAGATTAGTTGGGATGCCACAACTTGGGGGTAGCAGTGCATTATCTAGTACTAGAACAACTGCTGGGGGATTCAGCATGGGGCAAGTTGTTCAGGAGGCTGAGCCTGTGTTTTCAGGTGCACATGAAGGGCTCTGTTTGTGCGCTGCAAGGTTACTATTTCCTCTGTGGGAACTTCCTGTCATGGTTATAAAGGGTGGTTTAGGTTCTGCAGATACTATGTCAGAAGATGGGTTAGTCGTATGCAGACTCTCTCTTGAGGCTATGCAAGTCCTTGAAAACAAGATTCGTTCGCTAGAGAATTTTTTGAGGTCCAGAAAGAGCCAAAGGAGGGGACTTTATGGTTGTGTTGCTGGTTTAGGAGATCTGACTGGTTCTATTCTTTATGGAGCTGGTTCAGAATTAGGTGGTGGTGGCCGTGGTATGGTGAGGAACTTATTCGGTGCTTACTCAAGGAACACTGAGTCTAGTGATGGTGGTATGTCTAATAAAAGGCAGAGATTACCATATGGTCCTGCTGAACTAGCAGCAATGGAGGTGAGGGCAATGGAATGCATCAGGCAGTTACTTCTTAGATCCAGTGAAGCCCTGTTTCTGCCCCAGCTTCTTTCACAGCACCATGTCACATGCCTGGTTCAGGGGCTTGATGCTAACACAAGACAGAAATTAATTGTTTGTTCAGAGGAAGGTGACCACCTTGCGACAAGGCTAATATCTGCTCTTGTGGAATATTATACCGGTCCTGATGGCAGGGGGGCAGTAGATGATATTAGTGGGAGATTACGGGAAGGCTGTCCAAGCTATTATAAGGAGTCTGATTACAAGTTTTTTCTAGCTGTGGAGTGTCTTGAGAGAGCTGCTGTAACTCCAGATCCTGAGAAGGAGAGTCTTGCTAGAGAAGCCTTCAATTTCTTAAGTAAAGTTCCAGAATCTGCTGATTTGCGAACTGTTTGCAAACGGTTTGAGGATTTGAGGTTTTATGAAGCAGTGGTTCGCTTGCCTCTACAATAG

Protein Analysis

474

Amino Acids

51.85

Weight (kDa)

5.45

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 602, 1218
AccB7I CCANNNNNTGG 1 cut(s) 437
AciI CCGC 1 cut(s) 392
AclWI GGATC 2 cut(s) 981, 1277
AcoI YGGCCR 1 cut(s) 826
AcsI RAATTY 2 cut(s) 284, 712
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 4 cut(s) 51, 193, 351, 463
AfiI CCNNNNNNNGG 4 cut(s) 437, 742, 835, 1048
AflII CTTAAG 1 cut(s) 1324
AgeI ACCGGT 1 cut(s) 1148
AgsI TTSAA 6 cut(s) 150, 220, 292, 407, 689, 1318
AjnI CCWGG 2 cut(s) 266, 1041
AluBI AGCT 9 cut(s) 127, 305, 341, 401, 803, 1015, 1212, 1247, 1268
AluI AGCT 9 cut(s) 127, 305, 341, 401, 803, 1015, 1212, 1247, 1268
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 135
Alw44I GTGCAC 1 cut(s) 531
AlwI GGATC 2 cut(s) 981, 1277
AlwNI CAGNNNCTG 2 cut(s) 1286, 1343
AoxI GGCC 3 cut(s) 132, 255, 826
ApaLI GTGCAC 1 cut(s) 531
ApeKI GCWGC 6 cut(s) 314, 317, 338, 557, 938, 1268
ApoI RAATTY 2 cut(s) 284, 712
AseI ATTAAT 1 cut(s) 1079
AsiGI ACCGGT 1 cut(s) 1148
Asp700I GAANNNNTTC 1 cut(s) 848
AspLEI GCGC 1 cut(s) 557
AspS9I GGNCC 4 cut(s) 132, 723, 923, 1151
AsuHPI GGTGA 3 cut(s) 850, 961, 1112
AvaII GGWCC 3 cut(s) 723, 923, 1151
BaeGI GKGCMC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 6 cut(s) 301, 304, 350, 544, 950, 1255
BccI CCATC 3 cut(s) 635, 878, 1151
BceAI ACGGC 1 cut(s) 813
BcgI CGANNNNNNTGC 2 cut(s) 1344, 1378
BciT130I CCWGG 2 cut(s) 268, 1043
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 9 cut(s) 306, 342, 459, 465, 707, 879, 935, 1244, 1305
BfmI CTRYAG 2 cut(s) 9, 621
BfrI CTTAAG 1 cut(s) 1324
BglII AGATCT 1 cut(s) 775
BisI GCNGC 7 cut(s) 315, 318, 339, 393, 558, 939, 1269
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 7 cut(s) 316, 319, 340, 394, 559, 940, 1270
BmcAI AGTACT 2 cut(s) 193, 463
Bme1390I CCNGG 2 cut(s) 268, 1043
Bme18I GGWCC 3 cut(s) 723, 923, 1151
BmgT120I GGNCC 4 cut(s) 132, 723, 923, 1151
BmrFI CCNGG 2 cut(s) 268, 1043
BmsI GCATC 3 cut(s) 417, 975, 1048
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 1263
Bpu1102I GCTNAGC 1 cut(s) 513
BpuEI CTTGAG 3 cut(s) 689, 847, 1280
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 167, 266, 829
BsaWI WCCGGW 1 cut(s) 1148
Bsc4I CCNNNNNNNGG 4 cut(s) 437, 742, 835, 1048
Bse118I RCCGGY 1 cut(s) 1148
Bse1I ACTGG 2 cut(s) 787, 990
Bse3DI GCAATG 3 cut(s) 327, 948, 963
BseBI CCWGG 2 cut(s) 268, 1043
BseDI CCNNGG 3 cut(s) 167, 266, 829
BseGI GGATG 2 cut(s) 103, 432
BseLI CCNNNNNNNGG 4 cut(s) 437, 742, 835, 1048
BseMI GCAATG 3 cut(s) 327, 948, 963
BseMII CTCAG 4 cut(s) 230, 504, 864, 1278
BseNI ACTGG 2 cut(s) 787, 990
BseRI GAGGAG 2 cut(s) 153, 256
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 6 cut(s) 301, 304, 350, 544, 950, 1255
BseYI CCCAGC 2 cut(s) 476, 1011
BshFI GGCC 3 cut(s) 134, 257, 828
BshTI ACCGGT 1 cut(s) 1148
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 1 cut(s) 1149
BslFI GGGAC 2 cut(s) 40, 759
BslI CCNNNNNNNGG 4 cut(s) 437, 742, 835, 1048
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 40, 759
BsmI GAATGC 1 cut(s) 968
BsnI GGCC 3 cut(s) 134, 257, 828
Bso31I GGTCTC 1 cut(s) 135
Bsp1286I GDGCHC 2 cut(s) 535, 546
Bsp143I GATC 3 cut(s) 775, 986, 1282
Bsp1720I GCTNAGC 1 cut(s) 513
BspACI CCGC 1 cut(s) 392
BspANI GGCC 3 cut(s) 134, 257, 828
BspCNI CTCAG 4 cut(s) 231, 505, 865, 1279
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 2 cut(s) 981, 1277
BspTI CTTAAG 1 cut(s) 1324
BspTNI GGTCTC 1 cut(s) 135
BsrDI GCAATG 3 cut(s) 327, 948, 963
BsrFI RCCGGY 1 cut(s) 1148
BsrI ACTGG 2 cut(s) 787, 990
BssAI RCCGGY 1 cut(s) 1148
BssECI CCNNGG 3 cut(s) 167, 266, 829
BssMI GATC 3 cut(s) 775, 986, 1282
BssT1I CCWWGG 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 268, 1043
Bst4CI ACNGT 5 cut(s) 49, 54, 80, 1360, 1371
BstAFI CTTAAG 1 cut(s) 1324
BstC8I GCNNGC 2 cut(s) 336, 1409
BstDEI CTNAG 6 cut(s) 239, 277, 513, 873, 983, 1287
BstDSI CCRYGG 1 cut(s) 829
BstEII GGTNACC 1 cut(s) 1100
BstENI CCTNNNNNAGG 1 cut(s) 1046
BstF5I GGATG 2 cut(s) 103, 432
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 3 cut(s) 778, 989, 1285
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 3 cut(s) 775, 986, 1282
BstMWI GCNNNNNNNGC 6 cut(s) 311, 389, 398, 935, 1209, 1310
BstNI CCWGG 2 cut(s) 268, 1043
BstNSI RCATGY 1 cut(s) 1041
BstPI GGTNACC 1 cut(s) 1100
BstSCI CCNGG 2 cut(s) 266, 1041
BstSFI CTRYAG 2 cut(s) 9, 621
BstSLI GKGCMC 1 cut(s) 535
BstV1I GCAGC 6 cut(s) 301, 304, 350, 544, 950, 1255
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 3 cut(s) 775, 986, 1282
BstYI RGATCY 3 cut(s) 775, 986, 1282
BsuRI GGCC 3 cut(s) 134, 257, 828
BtgI CCRYGG 1 cut(s) 829
BtsCI GGATG 2 cut(s) 103, 432
BtsI GCAGTG 2 cut(s) 454, 1404
BtsIMutI CAGTG 4 cut(s) 454, 870, 997, 1404
Cac8I GCNNGC 2 cut(s) 336, 1409
CaiI CAGNNNCTG 2 cut(s) 1286, 1343
CfoI GCGC 1 cut(s) 557
Cfr10I RCCGGY 1 cut(s) 1148
Cfr13I GGNCC 4 cut(s) 132, 723, 923, 1151
Csp6I GTAC 4 cut(s) 50, 192, 350, 462
CspAI ACCGGT 1 cut(s) 1148
CviAII CATG 5 cut(s) 490, 536, 595, 1031, 1038
CviQI GTAC 4 cut(s) 50, 192, 350, 462
DdeI CTNAG 6 cut(s) 239, 277, 513, 873, 983, 1287
DpnI GATC 3 cut(s) 777, 988, 1284
DpnII GATC 3 cut(s) 775, 986, 1282
EaeI YGGCCR 1 cut(s) 826
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 546
Eco31I GGTCTC 1 cut(s) 135
Eco47I GGWCC 3 cut(s) 723, 923, 1151
Eco57I CTGAAG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 1100
EcoNI CCTNNNNNAGG 1 cut(s) 1046
EcoO65I GGTNACC 1 cut(s) 1100
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 266, 1041
EcoT14I CCWWGG 1 cut(s) 167
EcoT22I ATGCAT 1 cut(s) 968
EcoT38I GRGCYC 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 5 cut(s) 493, 539, 598, 1034, 1041
FaqI GGGAC 2 cut(s) 40, 759
FatI CATG 5 cut(s) 489, 535, 594, 1030, 1037
FauNDI CATATG 1 cut(s) 919
Fnu4HI GCNGC 7 cut(s) 315, 318, 339, 393, 558, 939, 1269
FokI GGATG 2 cut(s) 110, 439
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 7 cut(s) 315, 318, 339, 393, 558, 939, 1269
FspBI CTAG 9 cut(s) 306, 342, 459, 465, 707, 879, 935, 1244, 1305
GlaI GCGC 1 cut(s) 556
GluI GCNGC 7 cut(s) 315, 318, 339, 393, 558, 939, 1269
GsaI CCCAGC 2 cut(s) 480, 1015
GsuI CTGGAG 1 cut(s) 1263
HaeIII GGCC 3 cut(s) 134, 257, 828
HapII CCGG 1 cut(s) 1149
HhaI GCGC 1 cut(s) 557
Hin1II CATG 5 cut(s) 493, 539, 598, 1034, 1041
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HindIII AAGCTT 2 cut(s) 125, 399
HinfI GANTC 8 cut(s) 101, 483, 660, 697, 875, 1223, 1297, 1340
HpaII CCGG 1 cut(s) 1149
HphI GGTGA 3 cut(s) 850, 961, 1112
Hpy166II GTNNAC 2 cut(s) 232, 533
Hpy188I TCNGA 8 cut(s) 67, 240, 358, 637, 780, 811, 1093, 1228
Hpy188III TCNNGA 9 cut(s) 120, 506, 668, 726, 1154, 1259, 1280, 1286, 1337
Hpy8I GTNNAC 2 cut(s) 232, 533
HpyAV CCTTC 7 cut(s) 83, 382, 533, 1091, 1193, 1285, 1324
HpyCH4III ACNGT 5 cut(s) 49, 54, 80, 1360, 1371
HpyF10VI GCNNNNNNNGC 6 cut(s) 311, 389, 398, 935, 1209, 1310
HpyF3I CTNAG 6 cut(s) 239, 277, 513, 873, 983, 1287
Hsp92II CATG 5 cut(s) 493, 539, 598, 1034, 1041
HspAI GCGC 1 cut(s) 555
Kzo9I GATC 3 cut(s) 775, 986, 1282
LmnI GCTCC 2 cut(s) 302, 800
Lsp1109I GCAGC 6 cut(s) 301, 304, 350, 544, 950, 1255
LweI GCATC 3 cut(s) 417, 975, 1048
MaeI CTAG 9 cut(s) 306, 342, 459, 465, 707, 879, 935, 1244, 1305
MaeIII GTNAC 5 cut(s) 564, 975, 1033, 1100, 1273
MalI GATC 3 cut(s) 777, 988, 1284
MboI GATC 3 cut(s) 775, 986, 1282
MboII GAAGA 4 cut(s) 280, 293, 419, 650
MflI RGATCY 3 cut(s) 775, 986, 1282
MhlI GDGCHC 2 cut(s) 535, 546
MluCI AATT 6 cut(s) 284, 712, 812, 1076, 1080, 1318
MlyI GAGTC 5 cut(s) 110, 654, 884, 1232, 1306
MmeI TCCRAC 1 cut(s) 178
Mph1103I ATGCAT 1 cut(s) 968
MroXI GAANNNNTTC 1 cut(s) 848
MseI TTAA 2 cut(s) 1079, 1325
MspCI CTTAAG 1 cut(s) 1324
MspI CCGG 1 cut(s) 1149
MspR9I CCNGG 2 cut(s) 268, 1043
Mva1269I GAATGC 1 cut(s) 968
MvaI CCWGG 2 cut(s) 268, 1043
MwoI GCNNNNNNNGC 6 cut(s) 311, 389, 398, 935, 1209, 1310
NdeI CATATG 1 cut(s) 919
NdeII GATC 3 cut(s) 775, 986, 1282
NlaIII CATG 5 cut(s) 493, 539, 598, 1034, 1041
NmuCI GTSAC 2 cut(s) 1033, 1100
NsiI ATGCAT 1 cut(s) 968
NspI RCATGY 1 cut(s) 1041
PctI GAATGC 1 cut(s) 968
PdmI GAANNNNTTC 1 cut(s) 848
PfeI GAWTC 3 cut(s) 483, 697, 1340
PflMI CCANNNNNTGG 1 cut(s) 437
PinAI ACCGGT 1 cut(s) 1148
PkrI GCNGC 7 cut(s) 316, 319, 340, 394, 559, 940, 1270
PleI GAGTC 5 cut(s) 109, 654, 883, 1231, 1305
PpsI GAGTC 5 cut(s) 109, 654, 883, 1231, 1305
PshBI ATTAAT 1 cut(s) 1079
PsiI TTATAA 2 cut(s) 602, 1218
Psp6I CCWGG 2 cut(s) 266, 1041
PspEI GGTNACC 1 cut(s) 1100
PspFI CCCAGC 2 cut(s) 476, 1011
PspGI CCWGG 2 cut(s) 266, 1041
PspPI GGNCC 4 cut(s) 132, 723, 923, 1151
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 2 cut(s) 1286, 1343
PsuI RGATCY 3 cut(s) 775, 986, 1282
RsaI GTAC 4 cut(s) 51, 193, 351, 463
RsaNI GTAC 4 cut(s) 50, 192, 350, 462
SaqAI TTAA 2 cut(s) 1079, 1325
SatI GCNGC 7 cut(s) 315, 318, 339, 393, 558, 939, 1269
Sau3AI GATC 3 cut(s) 775, 986, 1282
Sau96I GGNCC 4 cut(s) 132, 723, 923, 1151
ScaI AGTACT 2 cut(s) 193, 463
SchI GAGTC 5 cut(s) 110, 654, 884, 1232, 1306
ScrFI CCNGG 2 cut(s) 268, 1043
SduI GDGCHC 2 cut(s) 535, 546
SfaNI GCATC 3 cut(s) 417, 975, 1048
SfcI CTRYAG 2 cut(s) 9, 621
SinI GGWCC 3 cut(s) 723, 923, 1151
SmlI CTYRAG 4 cut(s) 668, 862, 1259, 1324
SmoI CTYRAG 4 cut(s) 668, 862, 1259, 1324
Sse9I AATT 6 cut(s) 284, 712, 812, 1076, 1080, 1318
SsiI CCGC 1 cut(s) 392
SspI AATATT 1 cut(s) 1142
SspMI CTAG 9 cut(s) 306, 342, 459, 465, 707, 879, 935, 1244, 1305
StyD4I CCNGG 2 cut(s) 266, 1041
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 5 cut(s) 49, 54, 80, 1360, 1371
TaqI TCGA 1 cut(s) 72
TasI AATT 6 cut(s) 284, 712, 812, 1076, 1080, 1318
TatI WGTACW 4 cut(s) 49, 191, 349, 461
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 3 cut(s) 483, 697, 1340
Tru1I TTAA 2 cut(s) 1079, 1325
Tru9I TTAA 2 cut(s) 1079, 1325
TscAI CASTG 4 cut(s) 454, 877, 997, 1404
TseFI GTSAC 2 cut(s) 1033, 1100
TseI GCWGC 6 cut(s) 314, 317, 338, 557, 938, 1268
Tsp45I GTSAC 2 cut(s) 1033, 1100
TspDTI ATGAA 3 cut(s) 102, 552, 1407
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 4 cut(s) 454, 877, 997, 1404
Van91I CCANNNNNTGG 1 cut(s) 437
Vha464I CTTAAG 1 cut(s) 1324
VneI GTGCAC 1 cut(s) 531
VpaK11BI GGWCC 3 cut(s) 723, 923, 1151
VspI ATTAAT 1 cut(s) 1079
XagI CCTNNNNNAGG 1 cut(s) 1046
XapI RAATTY 2 cut(s) 284, 712
XceI RCATGY 1 cut(s) 1041
XmnI GAANNNNTTC 1 cut(s) 848
XspI CTAG 9 cut(s) 306, 342, 459, 465, 707, 879, 935, 1244, 1305
ZrmI AGTACT 2 cut(s) 193, 463
Zsp2I ATGCAT 1 cut(s) 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.