Nuclear pore complex protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G14850 |
| fragaria_vesca | FvH4_4g33560 FvH4_4g33560 FvH4_4g33560 |
| malus_domestica | MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1 |
| prunus_persica | Prupe.1G333300_v2.0.a1 |
| pyrus_communis | pycom13g01720 pycom16g01690 |
| rosa_chinensis | RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061 |
| rosa_laevigata | RLG00000005957 RLG00000021689 |
| rosa_multiflora | Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00083800 Rroxscaffold_5G00383690 |
| rosa_rugosa | Rorug04G0344100 |
| rosa_samantha | Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800 |
| rosa_wichuraiana | Rw2G049490 Rw4G034330 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 602, 1218 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 437 |
| AciI | CCGC | 1 cut(s) | 392 |
| AclWI | GGATC | 2 cut(s) | 981, 1277 |
| AcoI | YGGCCR | 1 cut(s) | 826 |
| AcsI | RAATTY | 2 cut(s) | 284, 712 |
| AcuI | CTGAAG | 1 cut(s) | 417 |
| AfaI | GTAC | 4 cut(s) | 51, 193, 351, 463 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 437, 742, 835, 1048 |
| AflII | CTTAAG | 1 cut(s) | 1324 |
| AgeI | ACCGGT | 1 cut(s) | 1148 |
| AgsI | TTSAA | 6 cut(s) | 150, 220, 292, 407, 689, 1318 |
| AjnI | CCWGG | 2 cut(s) | 266, 1041 |
| AluBI | AGCT | 9 cut(s) | 127, 305, 341, 401, 803, 1015, 1212, 1247, 1268 |
| AluI | AGCT | 9 cut(s) | 127, 305, 341, 401, 803, 1015, 1212, 1247, 1268 |
| Alw21I | GWGCWC | 1 cut(s) | 535 |
| Alw26I | GTCTC | 1 cut(s) | 135 |
| Alw44I | GTGCAC | 1 cut(s) | 531 |
| AlwI | GGATC | 2 cut(s) | 981, 1277 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1286, 1343 |
| AoxI | GGCC | 3 cut(s) | 132, 255, 826 |
| ApaLI | GTGCAC | 1 cut(s) | 531 |
| ApeKI | GCWGC | 6 cut(s) | 314, 317, 338, 557, 938, 1268 |
| ApoI | RAATTY | 2 cut(s) | 284, 712 |
| AseI | ATTAAT | 1 cut(s) | 1079 |
| AsiGI | ACCGGT | 1 cut(s) | 1148 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 848 |
| AspLEI | GCGC | 1 cut(s) | 557 |
| AspS9I | GGNCC | 4 cut(s) | 132, 723, 923, 1151 |
| AsuHPI | GGTGA | 3 cut(s) | 850, 961, 1112 |
| AvaII | GGWCC | 3 cut(s) | 723, 923, 1151 |
| BaeGI | GKGCMC | 1 cut(s) | 535 |
| BanII | GRGCYC | 1 cut(s) | 546 |
| BbsI | GAAGAC | 1 cut(s) | 414 |
| Bbv12I | GWGCWC | 1 cut(s) | 535 |
| BbvI | GCAGC | 6 cut(s) | 301, 304, 350, 544, 950, 1255 |
| BccI | CCATC | 3 cut(s) | 635, 878, 1151 |
| BceAI | ACGGC | 1 cut(s) | 813 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1344, 1378 |
| BciT130I | CCWGG | 2 cut(s) | 268, 1043 |
| BcoDI | GTCTC | 1 cut(s) | 135 |
| BfaI | CTAG | 9 cut(s) | 306, 342, 459, 465, 707, 879, 935, 1244, 1305 |
| BfmI | CTRYAG | 2 cut(s) | 9, 621 |
| BfrI | CTTAAG | 1 cut(s) | 1324 |
| BglII | AGATCT | 1 cut(s) | 775 |
| BisI | GCNGC | 7 cut(s) | 315, 318, 339, 393, 558, 939, 1269 |
| BlpI | GCTNAGC | 1 cut(s) | 513 |
| BlsI | GCNGC | 7 cut(s) | 316, 319, 340, 394, 559, 940, 1270 |
| BmcAI | AGTACT | 2 cut(s) | 193, 463 |
| Bme1390I | CCNGG | 2 cut(s) | 268, 1043 |
| Bme18I | GGWCC | 3 cut(s) | 723, 923, 1151 |
| BmgT120I | GGNCC | 4 cut(s) | 132, 723, 923, 1151 |
| BmrFI | CCNGG | 2 cut(s) | 268, 1043 |
| BmsI | GCATC | 3 cut(s) | 417, 975, 1048 |
| BpiI | GAAGAC | 1 cut(s) | 414 |
| BpmI | CTGGAG | 1 cut(s) | 1263 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 513 |
| BpuEI | CTTGAG | 3 cut(s) | 689, 847, 1280 |
| BsaI | GGTCTC | 1 cut(s) | 135 |
| BsaJI | CCNNGG | 3 cut(s) | 167, 266, 829 |
| BsaWI | WCCGGW | 1 cut(s) | 1148 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 437, 742, 835, 1048 |
| Bse118I | RCCGGY | 1 cut(s) | 1148 |
| Bse1I | ACTGG | 2 cut(s) | 787, 990 |
| Bse3DI | GCAATG | 3 cut(s) | 327, 948, 963 |
| BseBI | CCWGG | 2 cut(s) | 268, 1043 |
| BseDI | CCNNGG | 3 cut(s) | 167, 266, 829 |
| BseGI | GGATG | 2 cut(s) | 103, 432 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 437, 742, 835, 1048 |
| BseMI | GCAATG | 3 cut(s) | 327, 948, 963 |
| BseMII | CTCAG | 4 cut(s) | 230, 504, 864, 1278 |
| BseNI | ACTGG | 2 cut(s) | 787, 990 |
| BseRI | GAGGAG | 2 cut(s) | 153, 256 |
| BseSI | GKGCMC | 1 cut(s) | 535 |
| BseXI | GCAGC | 6 cut(s) | 301, 304, 350, 544, 950, 1255 |
| BseYI | CCCAGC | 2 cut(s) | 476, 1011 |
| BshFI | GGCC | 3 cut(s) | 134, 257, 828 |
| BshTI | ACCGGT | 1 cut(s) | 1148 |
| BsiHKAI | GWGCWC | 1 cut(s) | 535 |
| BsiSI | CCGG | 1 cut(s) | 1149 |
| BslFI | GGGAC | 2 cut(s) | 40, 759 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 437, 742, 835, 1048 |
| BsmAI | GTCTC | 1 cut(s) | 135 |
| BsmFI | GGGAC | 2 cut(s) | 40, 759 |
| BsmI | GAATGC | 1 cut(s) | 968 |
| BsnI | GGCC | 3 cut(s) | 134, 257, 828 |
| Bso31I | GGTCTC | 1 cut(s) | 135 |
| Bsp1286I | GDGCHC | 2 cut(s) | 535, 546 |
| Bsp143I | GATC | 3 cut(s) | 775, 986, 1282 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 513 |
| BspACI | CCGC | 1 cut(s) | 392 |
| BspANI | GGCC | 3 cut(s) | 134, 257, 828 |
| BspCNI | CTCAG | 4 cut(s) | 231, 505, 865, 1279 |
| BspMAI | CTGCAG | 1 cut(s) | 625 |
| BspPI | GGATC | 2 cut(s) | 981, 1277 |
| BspTI | CTTAAG | 1 cut(s) | 1324 |
| BspTNI | GGTCTC | 1 cut(s) | 135 |
| BsrDI | GCAATG | 3 cut(s) | 327, 948, 963 |
| BsrFI | RCCGGY | 1 cut(s) | 1148 |
| BsrI | ACTGG | 2 cut(s) | 787, 990 |
| BssAI | RCCGGY | 1 cut(s) | 1148 |
| BssECI | CCNNGG | 3 cut(s) | 167, 266, 829 |
| BssMI | GATC | 3 cut(s) | 775, 986, 1282 |
| BssT1I | CCWWGG | 1 cut(s) | 167 |
| Bst2UI | CCWGG | 2 cut(s) | 268, 1043 |
| Bst4CI | ACNGT | 5 cut(s) | 49, 54, 80, 1360, 1371 |
| BstAFI | CTTAAG | 1 cut(s) | 1324 |
| BstC8I | GCNNGC | 2 cut(s) | 336, 1409 |
| BstDEI | CTNAG | 6 cut(s) | 239, 277, 513, 873, 983, 1287 |
| BstDSI | CCRYGG | 1 cut(s) | 829 |
| BstEII | GGTNACC | 1 cut(s) | 1100 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1046 |
| BstF5I | GGATG | 2 cut(s) | 103, 432 |
| BstHHI | GCGC | 1 cut(s) | 557 |
| BstKTI | GATC | 3 cut(s) | 778, 989, 1285 |
| BstMAI | GTCTC | 1 cut(s) | 135 |
| BstMBI | GATC | 3 cut(s) | 775, 986, 1282 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 311, 389, 398, 935, 1209, 1310 |
| BstNI | CCWGG | 2 cut(s) | 268, 1043 |
| BstNSI | RCATGY | 1 cut(s) | 1041 |
| BstPI | GGTNACC | 1 cut(s) | 1100 |
| BstSCI | CCNGG | 2 cut(s) | 266, 1041 |
| BstSFI | CTRYAG | 2 cut(s) | 9, 621 |
| BstSLI | GKGCMC | 1 cut(s) | 535 |
| BstV1I | GCAGC | 6 cut(s) | 301, 304, 350, 544, 950, 1255 |
| BstV2I | GAAGAC | 1 cut(s) | 414 |
| BstX2I | RGATCY | 3 cut(s) | 775, 986, 1282 |
| BstYI | RGATCY | 3 cut(s) | 775, 986, 1282 |
| BsuRI | GGCC | 3 cut(s) | 134, 257, 828 |
| BtgI | CCRYGG | 1 cut(s) | 829 |
| BtsCI | GGATG | 2 cut(s) | 103, 432 |
| BtsI | GCAGTG | 2 cut(s) | 454, 1404 |
| BtsIMutI | CAGTG | 4 cut(s) | 454, 870, 997, 1404 |
| Cac8I | GCNNGC | 2 cut(s) | 336, 1409 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1286, 1343 |
| CfoI | GCGC | 1 cut(s) | 557 |
| Cfr10I | RCCGGY | 1 cut(s) | 1148 |
| Cfr13I | GGNCC | 4 cut(s) | 132, 723, 923, 1151 |
| Csp6I | GTAC | 4 cut(s) | 50, 192, 350, 462 |
| CspAI | ACCGGT | 1 cut(s) | 1148 |
| CviAII | CATG | 5 cut(s) | 490, 536, 595, 1031, 1038 |
| CviQI | GTAC | 4 cut(s) | 50, 192, 350, 462 |
| DdeI | CTNAG | 6 cut(s) | 239, 277, 513, 873, 983, 1287 |
| DpnI | GATC | 3 cut(s) | 777, 988, 1284 |
| DpnII | GATC | 3 cut(s) | 775, 986, 1282 |
| EaeI | YGGCCR | 1 cut(s) | 826 |
| Eco130I | CCWWGG | 1 cut(s) | 167 |
| Eco24I | GRGCYC | 1 cut(s) | 546 |
| Eco31I | GGTCTC | 1 cut(s) | 135 |
| Eco47I | GGWCC | 3 cut(s) | 723, 923, 1151 |
| Eco57I | CTGAAG | 1 cut(s) | 417 |
| Eco91I | GGTNACC | 1 cut(s) | 1100 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1046 |
| EcoO65I | GGTNACC | 1 cut(s) | 1100 |
| EcoRI | GAATTC | 1 cut(s) | 284 |
| EcoRII | CCWGG | 2 cut(s) | 266, 1041 |
| EcoT14I | CCWWGG | 1 cut(s) | 167 |
| EcoT22I | ATGCAT | 1 cut(s) | 968 |
| EcoT38I | GRGCYC | 1 cut(s) | 546 |
| ErhI | CCWWGG | 1 cut(s) | 167 |
| FaeI | CATG | 5 cut(s) | 493, 539, 598, 1034, 1041 |
| FaqI | GGGAC | 2 cut(s) | 40, 759 |
| FatI | CATG | 5 cut(s) | 489, 535, 594, 1030, 1037 |
| FauNDI | CATATG | 1 cut(s) | 919 |
| Fnu4HI | GCNGC | 7 cut(s) | 315, 318, 339, 393, 558, 939, 1269 |
| FokI | GGATG | 2 cut(s) | 110, 439 |
| FriOI | GRGCYC | 1 cut(s) | 546 |
| Fsp4HI | GCNGC | 7 cut(s) | 315, 318, 339, 393, 558, 939, 1269 |
| FspBI | CTAG | 9 cut(s) | 306, 342, 459, 465, 707, 879, 935, 1244, 1305 |
| GlaI | GCGC | 1 cut(s) | 556 |
| GluI | GCNGC | 7 cut(s) | 315, 318, 339, 393, 558, 939, 1269 |
| GsaI | CCCAGC | 2 cut(s) | 480, 1015 |
| GsuI | CTGGAG | 1 cut(s) | 1263 |
| HaeIII | GGCC | 3 cut(s) | 134, 257, 828 |
| HapII | CCGG | 1 cut(s) | 1149 |
| HhaI | GCGC | 1 cut(s) | 557 |
| Hin1II | CATG | 5 cut(s) | 493, 539, 598, 1034, 1041 |
| Hin6I | GCGC | 1 cut(s) | 555 |
| HinP1I | GCGC | 1 cut(s) | 555 |
| HindIII | AAGCTT | 2 cut(s) | 125, 399 |
| HinfI | GANTC | 8 cut(s) | 101, 483, 660, 697, 875, 1223, 1297, 1340 |
| HpaII | CCGG | 1 cut(s) | 1149 |
| HphI | GGTGA | 3 cut(s) | 850, 961, 1112 |
| Hpy166II | GTNNAC | 2 cut(s) | 232, 533 |
| Hpy188I | TCNGA | 8 cut(s) | 67, 240, 358, 637, 780, 811, 1093, 1228 |
| Hpy188III | TCNNGA | 9 cut(s) | 120, 506, 668, 726, 1154, 1259, 1280, 1286, 1337 |
| Hpy8I | GTNNAC | 2 cut(s) | 232, 533 |
| HpyAV | CCTTC | 7 cut(s) | 83, 382, 533, 1091, 1193, 1285, 1324 |
| HpyCH4III | ACNGT | 5 cut(s) | 49, 54, 80, 1360, 1371 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 311, 389, 398, 935, 1209, 1310 |
| HpyF3I | CTNAG | 6 cut(s) | 239, 277, 513, 873, 983, 1287 |
| Hsp92II | CATG | 5 cut(s) | 493, 539, 598, 1034, 1041 |
| HspAI | GCGC | 1 cut(s) | 555 |
| Kzo9I | GATC | 3 cut(s) | 775, 986, 1282 |
| LmnI | GCTCC | 2 cut(s) | 302, 800 |
| Lsp1109I | GCAGC | 6 cut(s) | 301, 304, 350, 544, 950, 1255 |
| LweI | GCATC | 3 cut(s) | 417, 975, 1048 |
| MaeI | CTAG | 9 cut(s) | 306, 342, 459, 465, 707, 879, 935, 1244, 1305 |
| MaeIII | GTNAC | 5 cut(s) | 564, 975, 1033, 1100, 1273 |
| MalI | GATC | 3 cut(s) | 777, 988, 1284 |
| MboI | GATC | 3 cut(s) | 775, 986, 1282 |
| MboII | GAAGA | 4 cut(s) | 280, 293, 419, 650 |
| MflI | RGATCY | 3 cut(s) | 775, 986, 1282 |
| MhlI | GDGCHC | 2 cut(s) | 535, 546 |
| MluCI | AATT | 6 cut(s) | 284, 712, 812, 1076, 1080, 1318 |
| MlyI | GAGTC | 5 cut(s) | 110, 654, 884, 1232, 1306 |
| MmeI | TCCRAC | 1 cut(s) | 178 |
| Mph1103I | ATGCAT | 1 cut(s) | 968 |
| MroXI | GAANNNNTTC | 1 cut(s) | 848 |
| MseI | TTAA | 2 cut(s) | 1079, 1325 |
| MspCI | CTTAAG | 1 cut(s) | 1324 |
| MspI | CCGG | 1 cut(s) | 1149 |
| MspR9I | CCNGG | 2 cut(s) | 268, 1043 |
| Mva1269I | GAATGC | 1 cut(s) | 968 |
| MvaI | CCWGG | 2 cut(s) | 268, 1043 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 311, 389, 398, 935, 1209, 1310 |
| NdeI | CATATG | 1 cut(s) | 919 |
| NdeII | GATC | 3 cut(s) | 775, 986, 1282 |
| NlaIII | CATG | 5 cut(s) | 493, 539, 598, 1034, 1041 |
| NmuCI | GTSAC | 2 cut(s) | 1033, 1100 |
| NsiI | ATGCAT | 1 cut(s) | 968 |
| NspI | RCATGY | 1 cut(s) | 1041 |
| PctI | GAATGC | 1 cut(s) | 968 |
| PdmI | GAANNNNTTC | 1 cut(s) | 848 |
| PfeI | GAWTC | 3 cut(s) | 483, 697, 1340 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 437 |
| PinAI | ACCGGT | 1 cut(s) | 1148 |
| PkrI | GCNGC | 7 cut(s) | 316, 319, 340, 394, 559, 940, 1270 |
| PleI | GAGTC | 5 cut(s) | 109, 654, 883, 1231, 1305 |
| PpsI | GAGTC | 5 cut(s) | 109, 654, 883, 1231, 1305 |
| PshBI | ATTAAT | 1 cut(s) | 1079 |
| PsiI | TTATAA | 2 cut(s) | 602, 1218 |
| Psp6I | CCWGG | 2 cut(s) | 266, 1041 |
| PspEI | GGTNACC | 1 cut(s) | 1100 |
| PspFI | CCCAGC | 2 cut(s) | 476, 1011 |
| PspGI | CCWGG | 2 cut(s) | 266, 1041 |
| PspPI | GGNCC | 4 cut(s) | 132, 723, 923, 1151 |
| PstI | CTGCAG | 1 cut(s) | 625 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1286, 1343 |
| PsuI | RGATCY | 3 cut(s) | 775, 986, 1282 |
| RsaI | GTAC | 4 cut(s) | 51, 193, 351, 463 |
| RsaNI | GTAC | 4 cut(s) | 50, 192, 350, 462 |
| SaqAI | TTAA | 2 cut(s) | 1079, 1325 |
| SatI | GCNGC | 7 cut(s) | 315, 318, 339, 393, 558, 939, 1269 |
| Sau3AI | GATC | 3 cut(s) | 775, 986, 1282 |
| Sau96I | GGNCC | 4 cut(s) | 132, 723, 923, 1151 |
| ScaI | AGTACT | 2 cut(s) | 193, 463 |
| SchI | GAGTC | 5 cut(s) | 110, 654, 884, 1232, 1306 |
| ScrFI | CCNGG | 2 cut(s) | 268, 1043 |
| SduI | GDGCHC | 2 cut(s) | 535, 546 |
| SfaNI | GCATC | 3 cut(s) | 417, 975, 1048 |
| SfcI | CTRYAG | 2 cut(s) | 9, 621 |
| SinI | GGWCC | 3 cut(s) | 723, 923, 1151 |
| SmlI | CTYRAG | 4 cut(s) | 668, 862, 1259, 1324 |
| SmoI | CTYRAG | 4 cut(s) | 668, 862, 1259, 1324 |
| Sse9I | AATT | 6 cut(s) | 284, 712, 812, 1076, 1080, 1318 |
| SsiI | CCGC | 1 cut(s) | 392 |
| SspI | AATATT | 1 cut(s) | 1142 |
| SspMI | CTAG | 9 cut(s) | 306, 342, 459, 465, 707, 879, 935, 1244, 1305 |
| StyD4I | CCNGG | 2 cut(s) | 266, 1041 |
| StyI | CCWWGG | 1 cut(s) | 167 |
| TaaI | ACNGT | 5 cut(s) | 49, 54, 80, 1360, 1371 |
| TaqI | TCGA | 1 cut(s) | 72 |
| TasI | AATT | 6 cut(s) | 284, 712, 812, 1076, 1080, 1318 |
| TatI | WGTACW | 4 cut(s) | 49, 191, 349, 461 |
| TauI | GCSGC | 1 cut(s) | 395 |
| TfiI | GAWTC | 3 cut(s) | 483, 697, 1340 |
| Tru1I | TTAA | 2 cut(s) | 1079, 1325 |
| Tru9I | TTAA | 2 cut(s) | 1079, 1325 |
| TscAI | CASTG | 4 cut(s) | 454, 877, 997, 1404 |
| TseFI | GTSAC | 2 cut(s) | 1033, 1100 |
| TseI | GCWGC | 6 cut(s) | 314, 317, 338, 557, 938, 1268 |
| Tsp45I | GTSAC | 2 cut(s) | 1033, 1100 |
| TspDTI | ATGAA | 3 cut(s) | 102, 552, 1407 |
| TspGWI | ACGGA | 1 cut(s) | 221 |
| TspRI | CASTG | 4 cut(s) | 454, 877, 997, 1404 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 437 |
| Vha464I | CTTAAG | 1 cut(s) | 1324 |
| VneI | GTGCAC | 1 cut(s) | 531 |
| VpaK11BI | GGWCC | 3 cut(s) | 723, 923, 1151 |
| VspI | ATTAAT | 1 cut(s) | 1079 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1046 |
| XapI | RAATTY | 2 cut(s) | 284, 712 |
| XceI | RCATGY | 1 cut(s) | 1041 |
| XmnI | GAANNNNTTC | 1 cut(s) | 848 |
| XspI | CTAG | 9 cut(s) | 306, 342, 459, 465, 707, 879, 935, 1244, 1305 |
| ZrmI | AGTACT | 2 cut(s) | 193, 463 |
| Zsp2I | ATGCAT | 1 cut(s) | 968 |