Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003791

Physical Location & Seq

Genomic Coordinates Forward (+)

81700106 .. 81700753

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53484

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCTATACTATGCAAGCAATTCCGGTCCTAATGTTGCATATAGTAGCAGTATAAGAGAAGCTTGGACTAAAGTAGTTGATGAAGCACTTTCAAAAGGTGGCGTCGCTGAAGCTTGTTGGCCACTGTGCCTCCACCTTGACAAAGCTGCATTGGAAAGACTGGAATCAGGGGCTGAATCCATCGGAGATGAAGATGTGGCAAGGGCTCTTCTTGCTGCTTCTTCCAAGGGTGCAACTGAGCCTGCATTGTTAAACGCATATGATCACTTATTATCAAAGAATGGTGCTGTTTCGCAATCGCCAAAGCTCAGGCTACACCTTCTGCGATCAGTACTAGTGATACTTCATCAGTGGGCAATGTCTCTGTTTGCACACAGAATGAGTACTAGTGCTTATAGACCTTCGATTATTTTGGATGCAGCAAAAAGGTACATGTCTGAGGTGAGTGAGGTCCAAAGATTAGACCTTCCACAGATGCACCAGCAAACTGAAGCTGTTTACAGTGGCTTTCAAGAAATTGAAGAATCACTGAGACACAAGTCACCTTTAAGAGTCACTGATCAGGTACTCATATCCTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006998 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010256 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0017038 GO:0017056 GO:0030054 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044611 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0061024 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

194

Amino Acids

21.43

Weight (kDa)

6.16

Isoelectric Point (pI)

66.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14850
fragaria_vesca	FvH4_4g33560 FvH4_4g33560 FvH4_4g33560
malus_domestica	MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1
prunus_persica	Prupe.1G333300_v2.0.a1
pyrus_communis	pycom13g01720 pycom16g01690
rosa_chinensis	RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061
rosa_laevigata	RLG00000005957 RLG00000021689
rosa_multiflora	Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083800 Rroxscaffold_5G00383690
rosa_rugosa	Rorug04G0344100
rosa_samantha	Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800
rosa_wichuraiana	Rw2G049490 Rw4G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	119
AcuI	CTGAAG	2 cut(s)	129, 510
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	4 cut(s)	333, 385, 431, 567
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	3 cut(s)	93, 512, 521
AhlI	ACTAGT	2 cut(s)	334, 386
AluBI	AGCT	5 cut(s)	62, 113, 146, 307, 494
AluI	AGCT	5 cut(s)	62, 113, 146, 307, 494
Alw26I	GTCTC	2 cut(s)	366, 526
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	3 cut(s)	146, 215, 419
AspS9I	GGNCC	2 cut(s)	26, 451
AsuHPI	GGTGA	2 cut(s)	454, 534
AvaII	GGWCC	2 cut(s)	26, 451
BalI	TGGCCA	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	208
BbvI	GCAGC	3 cut(s)	133, 202, 431
BccI	CCATC	1 cut(s)	188
BclI	TGATCA	2 cut(s)	262, 559
BcoDI	GTCTC	2 cut(s)	366, 526
BcuI	ACTAGT	2 cut(s)	334, 386
BfaI	CTAG	2 cut(s)	335, 387
BisI	GCNGC	3 cut(s)	147, 216, 420
BlsI	GCNGC	3 cut(s)	148, 217, 421
BmcAI	AGTACT	2 cut(s)	333, 385
Bme18I	GGWCC	2 cut(s)	26, 451
BmgT120I	GGNCC	2 cut(s)	26, 451
BmsI	GCATC	2 cut(s)	406, 465
BoxI	GACNNNNGTC	1 cut(s)	538
Bpu10I	CCTNAGC	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	421
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	4 cut(s)	228, 322, 429, 521
BseNI	ACTGG	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	133, 202, 431
BshFI	GGCC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	24
BsmAI	GTCTC	2 cut(s)	366, 526
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	262, 326, 559
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	4 cut(s)	229, 321, 430, 522
BspQI	GCTCTTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	262, 326, 559
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	126, 503
Bst6I	CTCTTC	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	16, 243
BstDEI	CTNAG	4 cut(s)	237, 308, 438, 530
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	3 cut(s)	265, 329, 562
BstMAI	GTCTC	2 cut(s)	366, 526
BstMBI	GATC	3 cut(s)	262, 326, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	436
BstPAI	GACNNNNGTC	1 cut(s)	538
BstV1I	GCAGC	3 cut(s)	133, 202, 431
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	5 cut(s)	122, 356, 508, 527, 555
Cac8I	GCNNGC	2 cut(s)	16, 243
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	26, 451
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	4 cut(s)	332, 384, 430, 566
CviAII	CATG	1 cut(s)	433
CviQI	GTAC	4 cut(s)	332, 384, 430, 566
DdeI	CTNAG	4 cut(s)	237, 308, 438, 530
DpnI	GATC	3 cut(s)	264, 328, 561
DpnII	GATC	3 cut(s)	262, 326, 559
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	26, 451
Eco57I	CTGAAG	2 cut(s)	129, 510
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	436
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FatI	CATG	1 cut(s)	432
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	2 cut(s)	262, 559
Fnu4HI	GCNGC	3 cut(s)	147, 216, 420
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	3 cut(s)	147, 216, 420
FspBI	CTAG	2 cut(s)	335, 387
GluI	GCNGC	3 cut(s)	147, 216, 420
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	436
HindIII	AAGCTT	2 cut(s)	60, 111
HinfI	GANTC	4 cut(s)	164, 176, 524, 552
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	2 cut(s)	454, 534
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	2 cut(s)	185, 439
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	329, 411, 476
HpyCH4III	ACNGT	2 cut(s)	126, 503
HpyCH4V	TGCA	8 cut(s)	14, 38, 149, 233, 245, 371, 419, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	4 cut(s)	237, 308, 438, 530
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	436
Ksp22I	TGATCA	2 cut(s)	262, 559
Kzo9I	GATC	3 cut(s)	262, 326, 559
LguI	GCTCTTC	1 cut(s)	213
LpnPI	CCDG	7 cut(s)	37, 146, 153, 255, 295, 494, 548
Lsp1109I	GCAGC	3 cut(s)	133, 202, 431
LweI	GCATC	2 cut(s)	406, 465
MaeI	CTAG	2 cut(s)	335, 387
MaeIII	GTNAC	2 cut(s)	540, 553
MalI	GATC	3 cut(s)	264, 328, 561
MboI	GATC	3 cut(s)	262, 326, 559
MboII	GAAGA	4 cut(s)	200, 203, 213, 533
MhlI	GDGCHC	1 cut(s)	208
MlsI	TGGCCA	1 cut(s)	121
MluCI	AATT	2 cut(s)	19, 516
MluNI	TGGCCA	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	561
MnlI	CCTC	3 cut(s)	140, 433, 442
Mox20I	TGGCCA	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	121
MseI	TTAA	2 cut(s)	251, 548
Msp20I	TGGCCA	1 cut(s)	121
MspI	CCGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	3 cut(s)	262, 326, 559
NlaIII	CATG	1 cut(s)	436
NmuCI	GTSAC	2 cut(s)	540, 553
NspI	RCATGY	1 cut(s)	436
PciI	ACATGT	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	164, 176, 524
PkrI	GCNGC	3 cut(s)	148, 217, 421
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PscI	ACATGT	1 cut(s)	432
PshAI	GACNNNNGTC	1 cut(s)	538
PspPI	GGNCC	2 cut(s)	26, 451
PstNI	CAGNNNCTG	1 cut(s)	173
RsaI	GTAC	4 cut(s)	333, 385, 431, 567
RsaNI	GTAC	4 cut(s)	332, 384, 430, 566
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	251, 548
SatI	GCNGC	3 cut(s)	147, 216, 420
Sau3AI	GATC	3 cut(s)	262, 326, 559
Sau96I	GGNCC	2 cut(s)	26, 451
ScaI	AGTACT	2 cut(s)	333, 385
SchI	GAGTC	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	2 cut(s)	406, 465
SinI	GGWCC	2 cut(s)	26, 451
SpeI	ACTAGT	2 cut(s)	334, 386
Sse9I	AATT	2 cut(s)	19, 516
SspMI	CTAG	2 cut(s)	335, 387
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	126, 503
TaqI	TCGA	1 cut(s)	404
TasI	AATT	2 cut(s)	19, 516
TatI	WGTACW	2 cut(s)	331, 383
TfiI	GAWTC	3 cut(s)	164, 176, 524
Tru1I	TTAA	2 cut(s)	251, 548
Tru9I	TTAA	2 cut(s)	251, 548
TscAI	CASTG	5 cut(s)	129, 356, 508, 534, 562
TseFI	GTSAC	2 cut(s)	540, 553
TseI	GCWGC	3 cut(s)	146, 215, 419
Tsp45I	GTSAC	2 cut(s)	540, 553
TspDTI	ATGAA	3 cut(s)	96, 204, 335
TspRI	CASTG	5 cut(s)	129, 356, 508, 534, 562
VpaK11BI	GGWCC	2 cut(s)	26, 451
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	2 cut(s)	335, 387
ZrmI	AGTACT	2 cut(s)	333, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.