Nuclear pore complex protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G14850 |
| fragaria_vesca | FvH4_4g33560 FvH4_4g33560 FvH4_4g33560 |
| malus_domestica | MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1 |
| prunus_persica | Prupe.1G333300_v2.0.a1 |
| pyrus_communis | pycom13g01720 pycom16g01690 |
| rosa_chinensis | RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061 |
| rosa_laevigata | RLG00000005957 RLG00000021689 |
| rosa_multiflora | Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00083800 Rroxscaffold_5G00383690 |
| rosa_rugosa | Rorug04G0344100 |
| rosa_samantha | Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800 |
| rosa_wichuraiana | Rw2G049490 Rw4G034330 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1787, 2658 |
| AarI | CACCTGC | 1 cut(s) | 2876 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 945 |
| Acc36I | ACCTGC | 2 cut(s) | 1906, 2876 |
| AccB1I | GGYRCC | 1 cut(s) | 3202 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 159, 557, 1076, 2254 |
| AccI | GTMKAC | 3 cut(s) | 925, 995, 1201 |
| AccII | CGCG | 2 cut(s) | 30, 1317 |
| AclWI | GGATC | 7 cut(s) | 369, 497, 569, 661, 2400, 2717, 3050 |
| AcoI | YGGCCR | 5 cut(s) | 70, 161, 622, 3223, 3270 |
| AcsI | RAATTY | 4 cut(s) | 244, 1081, 1703, 2115 |
| AcuI | CTGAAG | 6 cut(s) | 812, 834, 1836, 2159, 3942, 4422 |
| AcvI | CACGTG | 2 cut(s) | 582, 2936 |
| AdeI | CACNNNGTG | 1 cut(s) | 3999 |
| AflIII | ACRYGT | 2 cut(s) | 572, 581 |
| AjnI | CCWGG | 8 cut(s) | 199, 400, 999, 1685, 3507, 3623, 3640, 3964 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1279, 1311 |
| Alw21I | GWGCWC | 2 cut(s) | 1954, 2941 |
| Alw44I | GTGCAC | 1 cut(s) | 1950 |
| AlwI | GGATC | 7 cut(s) | 369, 497, 569, 661, 2400, 2717, 3050 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 1477, 1895, 2726, 2786, 3370 |
| Ama87I | CYCGRG | 2 cut(s) | 1374, 4010 |
| ApaLI | GTGCAC | 1 cut(s) | 1950 |
| ApoI | RAATTY | 4 cut(s) | 244, 1081, 1703, 2115 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 670, 702 |
| AseI | ATTAAT | 1 cut(s) | 3887 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 420, 2224, 4288 |
| AspLEI | GCGC | 1 cut(s) | 30 |
| AsuNHI | GCTAGC | 1 cut(s) | 1753 |
| AvaI | CYCGRG | 2 cut(s) | 1374, 4010 |
| AvaII | GGWCC | 5 cut(s) | 938, 947, 1828, 2591, 3191 |
| AxyI | CCTNAGG | 2 cut(s) | 2727, 4172 |
| BaeGI | GKGCMC | 1 cut(s) | 1954 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 115, 148, 4361, 4394 |
| BalI | TGGCCA | 1 cut(s) | 624 |
| BanI | GGYRCC | 1 cut(s) | 3202 |
| BanII | GRGCYC | 3 cut(s) | 1965, 4081, 4113 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 507, 539 |
| BauI | CACGAG | 2 cut(s) | 3128, 3720 |
| BbrPI | CACGTG | 2 cut(s) | 582, 2936 |
| Bbv12I | GWGCWC | 2 cut(s) | 1954, 2941 |
| BceAI | ACGGC | 3 cut(s) | 2825, 3190, 3210 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 270, 304, 2787, 2821, 4001, 4035 |
| BciT130I | CCWGG | 8 cut(s) | 201, 402, 1001, 1687, 3509, 3625, 3642, 3966 |
| BciVI | GTATCC | 1 cut(s) | 178 |
| BclI | TGATCA | 1 cut(s) | 3892 |
| BfmI | CTRYAG | 4 cut(s) | 524, 972, 2040, 3476 |
| BfuAI | ACCTGC | 2 cut(s) | 1906, 2876 |
| BfuI | GTATCC | 1 cut(s) | 178 |
| BglII | AGATCT | 1 cut(s) | 4335 |
| BlpI | GCTNAGC | 1 cut(s) | 1932 |
| BmcAI | AGTACT | 3 cut(s) | 1348, 1612, 3134 |
| Bme1390I | CCNGG | 8 cut(s) | 201, 402, 1001, 1687, 3509, 3625, 3642, 3966 |
| Bme18I | GGWCC | 5 cut(s) | 938, 947, 1828, 2591, 3191 |
| BmeT110I | CYCGRG | 2 cut(s) | 1374, 4010 |
| BmiI | GGNNCC | 3 cut(s) | 1830, 2153, 3204 |
| BmrFI | CCNGG | 8 cut(s) | 201, 402, 1001, 1687, 3509, 3625, 3642, 3966 |
| BmtI | GCTAGC | 1 cut(s) | 1757 |
| BoxI | GACNNNNGTC | 1 cut(s) | 594 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 895, 927, 3748, 3780 |
| BpmI | CTGGAG | 6 cut(s) | 504, 2414, 3200, 3987, 4281, 4316 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1932 |
| BpuEI | CTTGAG | 6 cut(s) | 1877, 2108, 2720, 3185, 3629, 4324 |
| Bsa29I | ATCGAT | 1 cut(s) | 955 |
| BsaAI | YACGTR | 2 cut(s) | 582, 2936 |
| BsaBI | GATNNNNATC | 4 cut(s) | 2481, 2966, 3593, 3702 |
| BsaI | GGTCTC | 1 cut(s) | 3067 |
| BsaWI | WCCGGW | 1 cut(s) | 3058 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1051, 1081, 1205, 1235, 3987, 4017 |
| Bse118I | RCCGGY | 1 cut(s) | 695 |
| Bse21I | CCTNAGG | 2 cut(s) | 2727, 4172 |
| Bse3DI | GCAATG | 7 cut(s) | 530, 1873, 2055, 2382, 2975, 3915, 4227 |
| Bse8I | GATNNNNATC | 4 cut(s) | 2481, 2966, 3593, 3702 |
| BseBI | CCWGG | 8 cut(s) | 201, 402, 1001, 1687, 3509, 3625, 3642, 3966 |
| BseCI | ATCGAT | 1 cut(s) | 955 |
| BseGI | GGATG | 9 cut(s) | 148, 337, 913, 1056, 1425, 1680, 3102, 3303, 3433 |
| BseJI | GATNNNNATC | 4 cut(s) | 2481, 2966, 3593, 3702 |
| BseMI | GCAATG | 7 cut(s) | 530, 1873, 2055, 2382, 2975, 3915, 4227 |
| BseRI | GAGGAG | 5 cut(s) | 1137, 1675, 2549, 2744, 3012 |
| BseSI | GKGCMC | 1 cut(s) | 1954 |
| BseX3I | CGGCCG | 1 cut(s) | 3270 |
| BseYI | CCCAGC | 4 cut(s) | 611, 1337, 1895, 3097 |
| BsgI | GTGCAG | 2 cut(s) | 4005, 4365 |
| Bsh1236I | CGCG | 2 cut(s) | 30, 1317 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3273 |
| BshNI | GGYRCC | 1 cut(s) | 3202 |
| BshVI | ATCGAT | 1 cut(s) | 955 |
| BsiEI | CGRYCG | 1 cut(s) | 3273 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1954, 2941 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1374, 4010 |
| BsiSI | CCGG | 2 cut(s) | 696, 3059 |
| BslFI | GGGAC | 4 cut(s) | 1369, 2178, 2328, 4434 |
| BsmBI | CGTCTC | 2 cut(s) | 90, 1585 |
| BsmFI | GGGAC | 4 cut(s) | 1369, 2178, 2328, 4434 |
| BsmI | GAATGC | 2 cut(s) | 1851, 2387 |
| Bso31I | GGTCTC | 1 cut(s) | 3067 |
| BsoBI | CYCGRG | 2 cut(s) | 1374, 4010 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1954, 1965, 2941, 4081, 4113 |
| Bsp1407I | TGTACA | 1 cut(s) | 1468 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1932 |
| Bsp19I | CCATGG | 3 cut(s) | 1290, 2361, 4414 |
| BspDI | ATCGAT | 1 cut(s) | 955 |
| BspFNI | CGCG | 2 cut(s) | 30, 1317 |
| BspLI | GGNNCC | 3 cut(s) | 1830, 2153, 3204 |
| BspMAI | CTGCAG | 1 cut(s) | 2044 |
| BspMI | ACCTGC | 2 cut(s) | 1906, 2876 |
| BspOI | GCTAGC | 1 cut(s) | 1757 |
| BspPI | GGATC | 7 cut(s) | 369, 497, 569, 661, 2400, 2717, 3050 |
| BspQI | GCTCTTC | 2 cut(s) | 3792, 4086 |
| BspT107I | GGYRCC | 1 cut(s) | 3202 |
| BspTNI | GGTCTC | 1 cut(s) | 3067 |
| BsrDI | GCAATG | 7 cut(s) | 530, 1873, 2055, 2382, 2975, 3915, 4227 |
| BsrFI | RCCGGY | 1 cut(s) | 695 |
| BsrGI | TGTACA | 1 cut(s) | 1468 |
| BssAI | RCCGGY | 1 cut(s) | 695 |
| BssSI | CACGAG | 2 cut(s) | 3128, 3720 |
| BssT1I | CCWWGG | 6 cut(s) | 1290, 1586, 2361, 3987, 4318, 4414 |
| Bst2BI | CACGAG | 2 cut(s) | 3128, 3720 |
| Bst2UI | CCWGG | 8 cut(s) | 201, 402, 1001, 1687, 3509, 3625, 3642, 3966 |
| Bst4CI | ACNGT | 9 cut(s) | 547, 1468, 1473, 2252, 2803, 2952, 3500, 3673, 3999 |
| Bst6I | CTCTTC | 6 cut(s) | 1305, 3353, 3792, 3935, 4086, 4428 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2891, 3370, 3716 |
| BstAUI | TGTACA | 1 cut(s) | 1468 |
| BstBAI | YACGTR | 2 cut(s) | 582, 2936 |
| BstDSI | CCRYGG | 4 cut(s) | 1290, 2361, 2841, 4414 |
| BstEII | GGTNACC | 3 cut(s) | 1559, 2243, 2540 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1152 |
| BstF5I | GGATG | 9 cut(s) | 148, 337, 913, 1056, 1425, 1680, 3102, 3303, 3433 |
| BstFNI | CGCG | 2 cut(s) | 30, 1317 |
| BstHHI | GCGC | 1 cut(s) | 30 |
| BstMCI | CGRYCG | 1 cut(s) | 3273 |
| BstNI | CCWGG | 8 cut(s) | 201, 402, 1001, 1687, 3509, 3625, 3642, 3966 |
| BstNSI | RCATGY | 3 cut(s) | 576, 1189, 2933 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 594 |
| BstPI | GGTNACC | 3 cut(s) | 1559, 2243, 2540 |
| BstSCI | CCNGG | 8 cut(s) | 199, 400, 999, 1685, 3507, 3623, 3640, 3964 |
| BstSFI | CTRYAG | 4 cut(s) | 524, 972, 2040, 3476 |
| BstSLI | GKGCMC | 1 cut(s) | 1954 |
| BstUI | CGCG | 2 cut(s) | 30, 1317 |
| BstX2I | RGATCY | 4 cut(s) | 502, 2405, 2722, 4335 |
| BstYI | RGATCY | 4 cut(s) | 502, 2405, 2722, 4335 |
| BstZI | CGGCCG | 1 cut(s) | 3270 |
| Bsu15I | ATCGAT | 1 cut(s) | 955 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2727, 4172 |
| BsuI | GTATCC | 1 cut(s) | 178 |
| BsuTUI | ATCGAT | 1 cut(s) | 955 |
| BtgI | CCRYGG | 4 cut(s) | 1290, 2361, 2841, 4414 |
| BtgZI | GCGATG | 2 cut(s) | 45, 1754 |
| BtsCI | GGATG | 9 cut(s) | 148, 337, 913, 1056, 1425, 1680, 3102, 3303, 3433 |
| BveI | ACCTGC | 2 cut(s) | 1906, 2876 |
| CaiI | CAGNNNCTG | 5 cut(s) | 1477, 1895, 2726, 2786, 3370 |
| CfoI | GCGC | 1 cut(s) | 30 |
| Cfr10I | RCCGGY | 1 cut(s) | 695 |
| ClaI | ATCGAT | 1 cut(s) | 955 |
| CsiI | ACCWGGT | 1 cut(s) | 400 |
| DraI | TTTAAA | 2 cut(s) | 1122, 3753 |
| DraIII | CACNNNGTG | 1 cut(s) | 3999 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 945 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 945 |
| EaeI | YGGCCR | 5 cut(s) | 70, 161, 622, 3223, 3270 |
| EagI | CGGCCG | 1 cut(s) | 3270 |
| Eam1104I | CTCTTC | 6 cut(s) | 1305, 3353, 3792, 3935, 4086, 4428 |
| EarI | CTCTTC | 6 cut(s) | 1305, 3353, 3792, 3935, 4086, 4428 |
| EclXI | CGGCCG | 1 cut(s) | 3270 |
| Eco130I | CCWWGG | 6 cut(s) | 1290, 1586, 2361, 3987, 4318, 4414 |
| Eco147I | AGGCCT | 5 cut(s) | 1141, 1645, 2756, 3031, 3507 |
| Eco24I | GRGCYC | 3 cut(s) | 1965, 4081, 4113 |
| Eco31I | GGTCTC | 1 cut(s) | 3067 |
| Eco47I | GGWCC | 5 cut(s) | 938, 947, 1828, 2591, 3191 |
| Eco52I | CGGCCG | 1 cut(s) | 3270 |
| Eco57I | CTGAAG | 6 cut(s) | 812, 834, 1836, 2159, 3942, 4422 |
| Eco72I | CACGTG | 2 cut(s) | 582, 2936 |
| Eco81I | CCTNAGG | 2 cut(s) | 2727, 4172 |
| Eco88I | CYCGRG | 2 cut(s) | 1374, 4010 |
| Eco91I | GGTNACC | 3 cut(s) | 1559, 2243, 2540 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1152 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1828, 3191 |
| EcoO65I | GGTNACC | 3 cut(s) | 1559, 2243, 2540 |
| EcoRI | GAATTC | 1 cut(s) | 1703 |
| EcoRII | CCWGG | 8 cut(s) | 199, 400, 999, 1685, 3507, 3623, 3640, 3964 |
| EcoT14I | CCWWGG | 6 cut(s) | 1290, 1586, 2361, 3987, 4318, 4414 |
| EcoT22I | ATGCAT | 2 cut(s) | 1873, 2387 |
| EcoT38I | GRGCYC | 3 cut(s) | 1965, 4081, 4113 |
| ErhI | CCWWGG | 6 cut(s) | 1290, 1586, 2361, 3987, 4318, 4414 |
| Esp3I | CGTCTC | 2 cut(s) | 90, 1585 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3552, 3584, 3859, 3891 |
| FaqI | GGGAC | 4 cut(s) | 1369, 2178, 2328, 4434 |
| FauI | CCCGC | 3 cut(s) | 37, 2353, 2890 |
| FauNDI | CATATG | 2 cut(s) | 508, 1997 |
| FbaI | TGATCA | 1 cut(s) | 3892 |
| FblI | GTMKAC | 3 cut(s) | 925, 995, 1201 |
| FokI | GGATG | 9 cut(s) | 135, 344, 920, 1063, 1432, 1667, 3089, 3290, 3440 |
| FriOI | GRGCYC | 3 cut(s) | 1965, 4081, 4113 |
| GlaI | GCGC | 1 cut(s) | 29 |
| GsaI | CCCAGC | 4 cut(s) | 615, 1341, 1899, 3101 |
| GsuI | CTGGAG | 6 cut(s) | 504, 2414, 3200, 3987, 4281, 4316 |
| HapII | CCGG | 2 cut(s) | 696, 3059 |
| HhaI | GCGC | 1 cut(s) | 30 |
| Hin6I | GCGC | 1 cut(s) | 28 |
| HinP1I | GCGC | 1 cut(s) | 28 |
| HincII | GTYRAC | 2 cut(s) | 757, 4140 |
| HindII | GTYRAC | 2 cut(s) | 757, 4140 |
| HindIII | AAGCTT | 4 cut(s) | 114, 1818, 3633, 3924 |
| HpaII | CCGG | 2 cut(s) | 696, 3059 |
| Hpy99I | CGWCG | 1 cut(s) | 56 |
| HpyCH4III | ACNGT | 9 cut(s) | 547, 1468, 1473, 2252, 2803, 2952, 3500, 3673, 3999 |
| HpyCH4IV | ACGT | 3 cut(s) | 581, 2935, 2944 |
| HpySE526I | ACGT | 3 cut(s) | 581, 2935, 2944 |
| HspAI | GCGC | 1 cut(s) | 28 |
| Ksp22I | TGATCA | 1 cut(s) | 3892 |
| LguI | GCTCTTC | 2 cut(s) | 3792, 4086 |
| LmnI | GCTCC | 6 cut(s) | 749, 1721, 2433, 3974, 4262, 4297 |
| MabI | ACCWGGT | 1 cut(s) | 400 |
| MaeII | ACGT | 3 cut(s) | 581, 2935, 2944 |
| MfeI | CAATTG | 2 cut(s) | 4104, 4133 |
| MflI | RGATCY | 4 cut(s) | 502, 2405, 2722, 4335 |
| MhlI | GDGCHC | 5 cut(s) | 1954, 1965, 2941, 4081, 4113 |
| MlsI | TGGCCA | 1 cut(s) | 624 |
| MluNI | TGGCCA | 1 cut(s) | 624 |
| MlyI | GAGTC | 4 cut(s) | 1529, 2303, 2672, 4445 |
| MmeI | TCCRAC | 5 cut(s) | 1597, 1822, 2947, 3537, 4036 |
| Mox20I | TGGCCA | 1 cut(s) | 624 |
| Mph1103I | ATGCAT | 2 cut(s) | 1873, 2387 |
| MroXI | GAANNNNTTC | 3 cut(s) | 420, 2224, 4288 |
| MscI | TGGCCA | 1 cut(s) | 624 |
| MslI | CAYNNNNRTG | 4 cut(s) | 630, 770, 2366, 2934 |
| Msp20I | TGGCCA | 1 cut(s) | 624 |
| MspA1I | CMGCKG | 7 cut(s) | 230, 1337, 1736, 1814, 1892, 2348, 3097 |
| MspI | CCGG | 2 cut(s) | 696, 3059 |
| MspR9I | CCNGG | 8 cut(s) | 201, 402, 1001, 1687, 3509, 3625, 3642, 3966 |
| MunI | CAATTG | 2 cut(s) | 4104, 4133 |
| Mva1269I | GAATGC | 2 cut(s) | 1851, 2387 |
| MvaI | CCWGG | 8 cut(s) | 201, 402, 1001, 1687, 3509, 3625, 3642, 3966 |
| MvnI | CGCG | 2 cut(s) | 30, 1317 |
| NcoI | CCATGG | 3 cut(s) | 1290, 2361, 4414 |
| NdeI | CATATG | 2 cut(s) | 508, 1997 |
| NheI | GCTAGC | 1 cut(s) | 1753 |
| NlaIV | GGNNCC | 3 cut(s) | 1830, 2153, 3204 |
| NmeAIII | GCCGAG | 1 cut(s) | 98 |
| NsiI | ATGCAT | 2 cut(s) | 1873, 2387 |
| NspI | RCATGY | 3 cut(s) | 576, 1189, 2933 |
| PaeI | GCATGC | 1 cut(s) | 2933 |
| PaeR7I | CTCGAG | 1 cut(s) | 4010 |
| PaqCI | CACCTGC | 1 cut(s) | 2876 |
| PceI | AGGCCT | 5 cut(s) | 1141, 1645, 2756, 3031, 3507 |
| PciI | ACATGT | 1 cut(s) | 572 |
| PciSI | GCTCTTC | 2 cut(s) | 3792, 4086 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 27, 2941, 4186 |
| PctI | GAATGC | 2 cut(s) | 1851, 2387 |
| PdmI | GAANNNNTTC | 3 cut(s) | 420, 2224, 4288 |
| PflFI | GACNNNGTC | 1 cut(s) | 339 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 159, 557, 1076, 2254 |
| PfoI | TCCNGGA | 2 cut(s) | 3623, 3964 |
| PleI | GAGTC | 4 cut(s) | 1528, 2302, 2671, 4444 |
| PmaCI | CACGTG | 2 cut(s) | 582, 2936 |
| PmlI | CACGTG | 2 cut(s) | 582, 2936 |
| PpsI | GAGTC | 4 cut(s) | 1528, 2302, 2671, 4444 |
| Ppu21I | YACGTR | 2 cut(s) | 582, 2936 |
| PpuMI | RGGWCCY | 2 cut(s) | 1828, 3191 |
| PscI | ACATGT | 1 cut(s) | 572 |
| PshAI | GACNNNNGTC | 1 cut(s) | 594 |
| PshBI | ATTAAT | 1 cut(s) | 3887 |
| PsiI | TTATAA | 2 cut(s) | 1787, 2658 |
| Psp5II | RGGWCCY | 2 cut(s) | 1828, 3191 |
| Psp6I | CCWGG | 8 cut(s) | 199, 400, 999, 1685, 3507, 3623, 3640, 3964 |
| PspCI | CACGTG | 2 cut(s) | 582, 2936 |
| PspEI | GGTNACC | 3 cut(s) | 1559, 2243, 2540 |
| PspFI | CCCAGC | 4 cut(s) | 611, 1337, 1895, 3097 |
| PspGI | CCWGG | 8 cut(s) | 199, 400, 999, 1685, 3507, 3623, 3640, 3964 |
| PspN4I | GGNNCC | 3 cut(s) | 1830, 2153, 3204 |
| PspPPI | RGGWCCY | 2 cut(s) | 1828, 3191 |
| PstI | CTGCAG | 1 cut(s) | 2044 |
| PstNI | CAGNNNCTG | 5 cut(s) | 1477, 1895, 2726, 2786, 3370 |
| PsuI | RGATCY | 4 cut(s) | 502, 2405, 2722, 4335 |
| PsyI | GACNNNGTC | 1 cut(s) | 339 |
| PvuII | CAGCTG | 5 cut(s) | 230, 1337, 1814, 1892, 3097 |
| RseI | CAYNNNNRTG | 4 cut(s) | 630, 770, 2366, 2934 |
| SapI | GCTCTTC | 2 cut(s) | 3792, 4086 |
| ScaI | AGTACT | 3 cut(s) | 1348, 1612, 3134 |
| SchI | GAGTC | 4 cut(s) | 1529, 2303, 2672, 4445 |
| ScrFI | CCNGG | 8 cut(s) | 201, 402, 1001, 1687, 3509, 3625, 3642, 3966 |
| SduI | GDGCHC | 5 cut(s) | 1954, 1965, 2941, 4081, 4113 |
| SexAI | ACCWGGT | 1 cut(s) | 400 |
| SfcI | CTRYAG | 4 cut(s) | 524, 972, 2040, 3476 |
| Sfr274I | CTCGAG | 1 cut(s) | 4010 |
| SinI | GGWCC | 5 cut(s) | 938, 947, 1828, 2591, 3191 |
| SlaI | CTCGAG | 1 cut(s) | 4010 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 630, 770, 2366, 2934 |
| SmlI | CTYRAG | 7 cut(s) | 1856, 2087, 2699, 3164, 3608, 4010, 4339 |
| SmoI | CTYRAG | 7 cut(s) | 1856, 2087, 2699, 3164, 3608, 4010, 4339 |
| SphI | GCATGC | 1 cut(s) | 2933 |
| SseBI | AGGCCT | 5 cut(s) | 1141, 1645, 2756, 3031, 3507 |
| SspI | AATATT | 2 cut(s) | 3326, 3715 |
| StuI | AGGCCT | 5 cut(s) | 1141, 1645, 2756, 3031, 3507 |
| StyD4I | CCNGG | 8 cut(s) | 199, 400, 999, 1685, 3507, 3623, 3640, 3964 |
| StyI | CCWWGG | 6 cut(s) | 1290, 1586, 2361, 3987, 4318, 4414 |
| TaaI | ACNGT | 9 cut(s) | 547, 1468, 1473, 2252, 2803, 2952, 3500, 3673, 3999 |
| TaiI | ACGT | 3 cut(s) | 584, 2938, 2947 |
| TaqI | TCGA | 7 cut(s) | 955, 1824, 4011, 4210, 4327, 4423, 4431 |
| TatI | WGTACW | 6 cut(s) | 584, 1346, 1468, 1610, 3132, 4204 |
| TauI | GCSGC | 4 cut(s) | 166, 1317, 1739, 3275 |
| TspGWI | ACGGA | 3 cut(s) | 1432, 2299, 4387 |
| Tth111I | GACNNNGTC | 1 cut(s) | 339 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 159, 557, 1076, 2254 |
| VneI | GTGCAC | 1 cut(s) | 1950 |
| VpaK11BI | GGWCC | 5 cut(s) | 938, 947, 1828, 2591, 3191 |
| VspI | ATTAAT | 1 cut(s) | 3887 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1152 |
| XapI | RAATTY | 4 cut(s) | 244, 1081, 1703, 2115 |
| XbaI | TCTAGA | 3 cut(s) | 2125, 3439, 3814 |
| XceI | RCATGY | 3 cut(s) | 576, 1189, 2933 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 769, 3798 |
| XhoI | CTCGAG | 1 cut(s) | 4010 |
| XmiI | GTMKAC | 3 cut(s) | 925, 995, 1201 |
| XmnI | GAANNNNTTC | 3 cut(s) | 420, 2224, 4288 |
| ZrmI | AGTACT | 3 cut(s) | 1348, 1612, 3134 |
| Zsp2I | ATGCAT | 2 cut(s) | 1873, 2387 |