Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039405.1

Orthogroup ID

OG0003791

Physical Location & Seq

Genomic Coordinates Forward (+)

951 .. 1433

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039405.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggagatattgaagcgggtttaccctaacagccactgtgcctccaccttggaaagactggaatcaggggctgaatccatcggagatgaagatgtggcaagggctcttcttgctgcttcttccaagggtgcaactgagcctgcattgttaaacgcatatgatcacttattatcaaagaatggtgctgtttcgcaatcgccaaagctcaggctacaccttctgcgatcagtactagtgatacttcatcagtgggcaatgtctctgtttgcacacagaacgagtactagtgcttatagaccttctattattttggatgcagcaaaaaggtacatgtctgaggtgagtgaggtccaaagattagaccttccacagatgcaccagcaaactgaagctgtttacagtggctttcaagaaattgaagaatcactgagacacaagtcacctataagagtcactgatcaggtactcatattctgtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006998 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010256 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0017038 GO:0017056 GO:0030054 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044611 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0061024 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

160

Amino Acids

17.93

Weight (kDa)

6.65

Isoelectric Point (pI)

68.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14850
fragaria_vesca	FvH4_4g33560 FvH4_4g33560 FvH4_4g33560
malus_domestica	MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1
prunus_persica	Prupe.1G333300_v2.0.a1
pyrus_communis	pycom13g01720 pycom16g01690
rosa_chinensis	RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061
rosa_laevigata	RLG00000005957 RLG00000021689
rosa_multiflora	Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083800 Rroxscaffold_5G00383690
rosa_rugosa	Rorug04G0344100
rosa_samantha	Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800
rosa_wichuraiana	Rw2G049490 Rw4G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	4 cut(s)	231, 283, 329, 465
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	3 cut(s)	13, 410, 419
AhlI	ACTAGT	2 cut(s)	232, 284
AluBI	AGCT	2 cut(s)	205, 392
AluI	AGCT	2 cut(s)	205, 392
Alw26I	GTCTC	2 cut(s)	264, 424
AlwNI	CAGNNNCTG	2 cut(s)	36, 71
ApeKI	GCWGC	2 cut(s)	113, 317
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	2 cut(s)	352, 432
AvaII	GGWCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	106
BarI	GAAGNNNNNNTAC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	100, 329
BccI	CCATC	1 cut(s)	86
BclI	TGATCA	2 cut(s)	160, 457
BcoDI	GTCTC	2 cut(s)	264, 424
BcuI	ACTAGT	2 cut(s)	232, 284
BfaI	CTAG	2 cut(s)	233, 285
BisI	GCNGC	2 cut(s)	114, 318
BlsI	GCNGC	2 cut(s)	115, 319
BmcAI	AGTACT	2 cut(s)	231, 283
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmsI	GCATC	2 cut(s)	304, 363
BoxI	GACNNNNGTC	1 cut(s)	436
Bpu10I	CCTNAGC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	48, 123
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	48, 123
BseGI	GGATG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	4 cut(s)	126, 220, 327, 419
BseNI	ACTGG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	100, 329
BsmAI	GTCTC	2 cut(s)	264, 424
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	3 cut(s)	160, 224, 457
BspACI	CCGC	1 cut(s)	16
BspCNI	CTCAG	4 cut(s)	127, 219, 328, 420
BspQI	GCTCTTC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	48, 123
BssMI	GATC	3 cut(s)	160, 224, 457
BssT1I	CCWWGG	2 cut(s)	48, 123
Bst4CI	ACNGT	2 cut(s)	38, 401
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	4 cut(s)	135, 206, 336, 428
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	3 cut(s)	163, 227, 460
BstMAI	GTCTC	2 cut(s)	264, 424
BstMBI	GATC	3 cut(s)	160, 224, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	334
BstPAI	GACNNNNGTC	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	100, 329
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	5 cut(s)	34, 254, 406, 425, 453
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	2 cut(s)	36, 71
Cfr13I	GGNCC	1 cut(s)	349
Csp6I	GTAC	4 cut(s)	230, 282, 328, 464
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	8 cut(s)	33, 71, 104, 139, 205, 211, 392, 405
CviKI_1	RGCY	8 cut(s)	33, 71, 104, 139, 205, 211, 392, 405
CviQI	GTAC	4 cut(s)	230, 282, 328, 464
DdeI	CTNAG	4 cut(s)	135, 206, 336, 428
DpnI	GATC	3 cut(s)	162, 226, 459
DpnII	GATC	3 cut(s)	160, 224, 457
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	48, 123
Eco24I	GRGCYC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	408
EcoT14I	CCWWGG	2 cut(s)	48, 123
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	2 cut(s)	48, 123
FaeI	CATG	1 cut(s)	334
FaiI	YATR	6 cut(s)	157, 159, 294, 332, 446, 470
FatI	CATG	1 cut(s)	330
FauI	CCCGC	1 cut(s)	9
FauNDI	CATATG	1 cut(s)	157
FbaI	TGATCA	2 cut(s)	160, 457
Fnu4HI	GCNGC	2 cut(s)	114, 318
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	2 cut(s)	114, 318
FspBI	CTAG	2 cut(s)	233, 285
GluI	GCNGC	2 cut(s)	114, 318
Hin1II	CATG	1 cut(s)	334
HinfI	GANTC	4 cut(s)	62, 74, 422, 450
HphI	GGTGA	2 cut(s)	352, 432
Hpy166II	GTNNAC	2 cut(s)	22, 397
Hpy188I	TCNGA	2 cut(s)	83, 337
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	2 cut(s)	22, 397
HpyAV	CCTTC	3 cut(s)	227, 309, 374
HpyCH4III	ACNGT	2 cut(s)	38, 401
HpyCH4V	TGCA	5 cut(s)	131, 143, 269, 317, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	4 cut(s)	135, 206, 336, 428
Hsp92II	CATG	1 cut(s)	334
Ksp22I	TGATCA	2 cut(s)	160, 457
Kzo9I	GATC	3 cut(s)	160, 224, 457
LguI	GCTCTTC	1 cut(s)	111
LpnPI	CCDG	6 cut(s)	44, 51, 153, 193, 392, 446
Lsp1109I	GCAGC	2 cut(s)	100, 329
LweI	GCATC	2 cut(s)	304, 363
MaeI	CTAG	2 cut(s)	233, 285
MaeIII	GTNAC	2 cut(s)	438, 451
MalI	GATC	3 cut(s)	162, 226, 459
MboI	GATC	3 cut(s)	160, 224, 457
MboII	GAAGA	4 cut(s)	98, 101, 111, 431
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	1 cut(s)	414
MlyI	GAGTC	1 cut(s)	459
MnlI	CCTC	3 cut(s)	52, 331, 340
MseI	TTAA	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	3 cut(s)	160, 224, 457
NlaIII	CATG	1 cut(s)	334
NmuCI	GTSAC	2 cut(s)	438, 451
NspI	RCATGY	1 cut(s)	334
PciI	ACATGT	1 cut(s)	330
PciSI	GCTCTTC	1 cut(s)	111
PfeI	GAWTC	3 cut(s)	62, 74, 422
PkrI	GCNGC	2 cut(s)	115, 319
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
PscI	ACATGT	1 cut(s)	330
PshAI	GACNNNNGTC	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	2 cut(s)	36, 71
RsaI	GTAC	4 cut(s)	231, 283, 329, 465
RsaNI	GTAC	4 cut(s)	230, 282, 328, 464
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	2 cut(s)	114, 318
Sau3AI	GATC	3 cut(s)	160, 224, 457
Sau96I	GGNCC	1 cut(s)	349
ScaI	AGTACT	2 cut(s)	231, 283
SchI	GAGTC	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	106
SfaNI	GCATC	2 cut(s)	304, 363
SinI	GGWCC	1 cut(s)	349
SpeI	ACTAGT	2 cut(s)	232, 284
Sse9I	AATT	1 cut(s)	414
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	2 cut(s)	233, 285
StyI	CCWWGG	2 cut(s)	48, 123
TaaI	ACNGT	2 cut(s)	38, 401
TasI	AATT	1 cut(s)	414
TatI	WGTACW	2 cut(s)	229, 281
TfiI	GAWTC	3 cut(s)	62, 74, 422
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	5 cut(s)	41, 254, 406, 432, 460
TseFI	GTSAC	2 cut(s)	438, 451
TseI	GCWGC	2 cut(s)	113, 317
Tsp45I	GTSAC	2 cut(s)	438, 451
TspDTI	ATGAA	2 cut(s)	102, 233
TspRI	CASTG	5 cut(s)	41, 254, 406, 432, 460
VpaK11BI	GGWCC	1 cut(s)	349
XceI	RCATGY	1 cut(s)	334
XspI	CTAG	2 cut(s)	233, 285
ZrmI	AGTACT	2 cut(s)	231, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.