Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003791

Physical Location & Seq

Genomic Coordinates Reverse (-)

6415578 .. 6417688

Gene Structure 2111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCTAGCAGCCGGGATAGTCCATCCGAAGTTCATATCGGCAAAGTTGTTGCTCGTAGTGCAGCCGAAGCTTTTGAGGACCAAAGACCGGTTCAAAAGGCGAGAGATTGTTGAGGAGGCCGAGCACGATTTTTCACCGCACATGAAGGGCTATGTTTGTGCTCGGCAAGGCTGCTTTTACCTCTATGGGAACTTCCTTTTGTGGTGGAAAAAGGCGGTTCGGTCATGTGCGGACTATCTTTTGAGGCAATGCAGCGGTGGTCCACTTACCTTTACGAAGGCACAAGCTCTTGACCCCAAAGGTGATGCTTTTAACAACCAAATTGATGCAGCAGTTCGAGAAGATGTTCGGTGTTATGAGATTATCATCGGTGCACTTGCGTTCTCTAAAAGGGGCAGCATCGGCTTGCAGCTCATGCATTGCAAAGACCGCGAGAGGAACTCAACCGATTCGAGAGGATGTTCCTTCTCTAGATCAAAGATAAAGATCAAAGCGGAACTTGAGGCTTTGCACGGTGCATACGAGTCCGTCCGGTGTGGAAGTGACACCAACATTGCACGAGAAAAGGCCAAAGAGATATCTCTGGAAATGCTATACTATGCAAGCAATTCGGTCCTAATGTTGCATATAGTAGCGATAAGAGAAGCTTGGACTAAAGTAATTGATGAAGCACTTTCAAAAGGTGGCGTCGCTGAAGCTTGTTGGGTATTGAAGAGACTTGGTTCTTACGTTCATCATGGAGATATTGGAGCGGGTTTACCCTTACGTACACCGTGCCTCCACCTTGAGAAAATTTGCATTGGAAAGACCGGAGTCGGGGGTGAATCCATCGGAGATGAAGATGTGGCAAGGGATCTTCTTGCTGCTTCTTCCAAGGGTGCAAGCGAGCCTGCATTGTTAAATGCATATGATCGATTATTATCAAAGAATGGTGCTGTTTCACAATCGCAAAAGCTCGGGCTACGCCTTCTCCGATCGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006998 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010256 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0017038 GO:0017056 GO:0030054 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044611 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0061024 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

327

Amino Acids

36.15

Weight (kDa)

9.16

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14850
fragaria_vesca	FvH4_4g33560 FvH4_4g33560 FvH4_4g33560
malus_domestica	MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1
prunus_persica	Prupe.1G333300_v2.0.a1
pyrus_communis	pycom13g01720 pycom16g01690
rosa_chinensis	RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061
rosa_laevigata	RLG00000005957 RLG00000021689
rosa_multiflora	Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083800 Rroxscaffold_5G00383690
rosa_rugosa	Rorug04G0344100
rosa_samantha	Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800
rosa_wichuraiana	Rw2G049490 Rw4G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	752
AccII	CGCG	1 cut(s)	432
AciI	CCGC	7 cut(s)	137, 215, 230, 255, 430, 494, 752
AclWI	GGATC	1 cut(s)	861
AcsI	RAATTY	1 cut(s)	792
AcuI	CTGAAG	1 cut(s)	714
AcyI	GRCGYC	1 cut(s)	687
AfaI	GTAC	2 cut(s)	769, 980
AfiI	CCNNNNNNNGG	2 cut(s)	87, 816
AgeI	ACCGGT	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	94, 678, 712
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	6 cut(s)	70, 287, 412, 647, 698, 955
AluI	AGCT	6 cut(s)	70, 287, 412, 647, 698, 955
Alw21I	GWGCWC	3 cut(s)	126, 163, 376
Alw26I	GTCTC	1 cut(s)	709
Alw44I	GTGCAC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	861
Ama87I	CYCGRG	1 cut(s)	956
AoxI	GGCC	2 cut(s)	117, 567
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	8 cut(s)	8, 61, 171, 252, 329, 396, 409, 863
ApoI	RAATTY	1 cut(s)	792
AsiGI	ACCGGT	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	3 cut(s)	78, 260, 613
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	3 cut(s)	126, 314, 833
AsuNHI	GCTAGC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	956
AvaII	GGWCC	3 cut(s)	78, 260, 613
BaeGI	GKGCMC	1 cut(s)	376
BauI	CACGAG	1 cut(s)	558
Bbv12I	GWGCWC	3 cut(s)	126, 163, 376
BbvI	GCAGC	8 cut(s)	20, 73, 158, 264, 341, 408, 421, 850
BccI	CCATC	2 cut(s)	30, 836
BcgI	CGANNNNNNTGC	2 cut(s)	591, 625
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	709
BfaI	CTAG	3 cut(s)	5, 471, 982
BisI	GCNGC	8 cut(s)	9, 62, 172, 253, 330, 397, 410, 864
BlsI	GCNGC	8 cut(s)	10, 63, 173, 254, 331, 398, 411, 865
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	3 cut(s)	78, 260, 613
BmeT110I	CYCGRG	1 cut(s)	956
BmgT120I	GGNCC	3 cut(s)	78, 260, 613
BmrFI	CCNGG	1 cut(s)	13
BmsI	GCATC	3 cut(s)	295, 316, 408
BmtI	GCTAGC	1 cut(s)	8
BoxI	GACNNNNGTC	1 cut(s)	812
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpuEI	CTTGAG	2 cut(s)	521, 806
BpuMI	CCSGG	1 cut(s)	13
Bsa29I	ATCGAT	1 cut(s)	913
BsaAI	YACGTR	1 cut(s)	767
BsaBI	GATNNNNATC	3 cut(s)	365, 485, 919
BsaHI	GRCGYC	1 cut(s)	687
BsaJI	CCNNGG	1 cut(s)	873
BsaWI	WCCGGW	3 cut(s)	87, 531, 809
BsaXI	ACNNNNNCTCC	4 cut(s)	762, 792, 954, 984
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 816
Bse118I	RCCGGY	1 cut(s)	87
Bse3DI	GCAATG	3 cut(s)	254, 418, 552
Bse8I	GATNNNNATC	3 cut(s)	365, 485, 919
BseCI	ATCGAT	1 cut(s)	913
BseDI	CCNNGG	1 cut(s)	873
BseGI	GGATG	2 cut(s)	22, 464
BseJI	GATNNNNATC	3 cut(s)	365, 485, 919
BseLI	CCNNNNNNNGG	2 cut(s)	87, 816
BseMI	GCAATG	3 cut(s)	254, 418, 552
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	8 cut(s)	20, 73, 158, 264, 341, 408, 421, 850
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	432
Bsh1285I	CGRYCG	1 cut(s)	977
BshFI	GGCC	2 cut(s)	119, 569
BshTI	ACCGGT	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	913
BsiEI	CGRYCG	1 cut(s)	977
BsiHKAI	GWGCWC	3 cut(s)	126, 163, 376
BsiHKCI	CYCGRG	1 cut(s)	956
BsiSI	CCGG	4 cut(s)	12, 88, 532, 810
BslI	CCNNNNNNNGG	2 cut(s)	87, 816
BsmAI	GTCTC	1 cut(s)	709
BsnI	GGCC	2 cut(s)	119, 569
BsoBI	CYCGRG	1 cut(s)	956
Bsp1286I	GDGCHC	3 cut(s)	126, 163, 376
Bsp143I	GATC	5 cut(s)	473, 486, 853, 910, 974
BspACI	CCGC	7 cut(s)	137, 215, 230, 255, 430, 494, 752
BspANI	GGCC	2 cut(s)	119, 569
BspDI	ATCGAT	1 cut(s)	913
BspFNI	CGCG	1 cut(s)	432
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	861
BsrBI	CCGCTC	1 cut(s)	752
BsrDI	GCAATG	3 cut(s)	254, 418, 552
BsrFI	RCCGGY	1 cut(s)	87
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	873
BssMI	GATC	5 cut(s)	473, 486, 853, 910, 974
BssNI	GRCGYC	1 cut(s)	687
BssSI	CACGAG	1 cut(s)	558
BssT1I	CCWWGG	1 cut(s)	873
Bst2BI	CACGAG	1 cut(s)	558
Bst4CI	ACNGT	2 cut(s)	515, 774
Bst6I	CTCTTC	1 cut(s)	707
BstACI	GRCGYC	1 cut(s)	687
BstAPI	GCANNNNNTGC	1 cut(s)	415
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	6 cut(s)	6, 407, 604, 883, 887, 891
BstF5I	GGATG	2 cut(s)	22, 464
BstFNI	CGCG	1 cut(s)	432
BstKTI	GATC	5 cut(s)	476, 489, 856, 913, 977
BstMAI	GTCTC	1 cut(s)	709
BstMBI	GATC	5 cut(s)	473, 486, 853, 910, 974
BstMCI	CGRYCG	1 cut(s)	977
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 67, 402, 415, 429
BstPAI	GACNNNNGTC	1 cut(s)	812
BstSCI	CCNGG	1 cut(s)	11
BstSLI	GKGCMC	1 cut(s)	376
BstSNI	TACGTA	1 cut(s)	767
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	8 cut(s)	20, 73, 158, 264, 341, 408, 421, 850
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
Bsu15I	ATCGAT	1 cut(s)	913
BsuRI	GGCC	2 cut(s)	119, 569
BsuTUI	ATCGAT	1 cut(s)	913
BtsCI	GGATG	2 cut(s)	22, 464
Cac8I	GCNNGC	6 cut(s)	6, 407, 604, 883, 887, 891
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	3 cut(s)	78, 260, 613
ClaI	ATCGAT	1 cut(s)	913
CseI	GACGC	1 cut(s)	676
Csp6I	GTAC	2 cut(s)	768, 979
CspAI	ACCGGT	1 cut(s)	87
CviAII	CATG	4 cut(s)	142, 225, 415, 737
CviQI	GTAC	2 cut(s)	768, 979
DpnI	GATC	5 cut(s)	475, 488, 855, 912, 976
DpnII	GATC	5 cut(s)	473, 486, 853, 910, 974
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
Eco105I	TACGTA	1 cut(s)	767
Eco130I	CCWWGG	1 cut(s)	873
Eco32I	GATATC	1 cut(s)	579
Eco47I	GGWCC	3 cut(s)	78, 260, 613
Eco57I	CTGAAG	1 cut(s)	714
Eco88I	CYCGRG	1 cut(s)	956
EcoRV	GATATC	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	873
EcoT22I	ATGCAT	2 cut(s)	420, 907
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	4 cut(s)	145, 228, 418, 740
FalI	AAGNNNNNCTT	4 cut(s)	483, 515, 631, 663
FatI	CATG	4 cut(s)	141, 224, 414, 736
FauI	CCCGC	1 cut(s)	745
FauNDI	CATATG	1 cut(s)	907
Fnu4HI	GCNGC	8 cut(s)	9, 62, 172, 253, 330, 397, 410, 864
FokI	GGATG	2 cut(s)	9, 471
Fsp4HI	GCNGC	8 cut(s)	9, 62, 172, 253, 330, 397, 410, 864
FspBI	CTAG	3 cut(s)	5, 471, 982
GluI	GCNGC	8 cut(s)	9, 62, 172, 253, 330, 397, 410, 864
HaeIII	GGCC	2 cut(s)	119, 569
HapII	CCGG	4 cut(s)	12, 88, 532, 810
HgaI	GACGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	687
Hin1II	CATG	4 cut(s)	145, 228, 418, 740
HindIII	AAGCTT	3 cut(s)	68, 645, 696
HinfI	GANTC	4 cut(s)	449, 524, 813, 824
HpaII	CCGG	4 cut(s)	12, 88, 532, 810
HphI	GGTGA	3 cut(s)	126, 314, 833
Hpy166II	GTNNAC	4 cut(s)	263, 374, 758, 770
Hpy188I	TCNGA	3 cut(s)	27, 833, 974
Hpy188III	TCNNGA	5 cut(s)	290, 338, 453, 471, 584
Hpy8I	GTNNAC	4 cut(s)	263, 374, 758, 770
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	4 cut(s)	139, 271, 475, 977
HpyCH4III	ACNGT	2 cut(s)	515, 774
HpyCH4IV	ACGT	2 cut(s)	729, 766
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 67, 402, 415, 429
HpySE526I	ACGT	2 cut(s)	729, 766
Hsp92I	GRCGYC	1 cut(s)	687
Hsp92II	CATG	4 cut(s)	145, 228, 418, 740
Kzo9I	GATC	5 cut(s)	473, 486, 853, 910, 974
LmnI	GCTCC	1 cut(s)	749
LpnPI	CCDG	6 cut(s)	25, 101, 545, 569, 823, 903
Lsp1109I	GCAGC	8 cut(s)	20, 73, 158, 264, 341, 408, 421, 850
LweI	GCATC	3 cut(s)	295, 316, 408
MaeI	CTAG	3 cut(s)	5, 471, 982
MaeII	ACGT	2 cut(s)	729, 766
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	5 cut(s)	475, 488, 855, 912, 976
MbiI	CCGCTC	1 cut(s)	752
MboI	GATC	5 cut(s)	473, 486, 853, 910, 974
MboII	GAAGA	5 cut(s)	353, 724, 848, 851, 861
MflI	RGATCY	1 cut(s)	853
MhlI	GDGCHC	3 cut(s)	126, 163, 376
MluCI	AATT	4 cut(s)	321, 607, 660, 792
MlyI	GAGTC	2 cut(s)	533, 822
MnlI	CCTC	9 cut(s)	69, 106, 109, 191, 237, 429, 449, 496, 788
Mph1103I	ATGCAT	2 cut(s)	420, 907
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	2 cut(s)	312, 899
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	4 cut(s)	12, 88, 532, 810
MspR9I	CCNGG	1 cut(s)	13
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	5 cut(s)	58, 67, 402, 415, 429
NciI	CCSGG	1 cut(s)	13
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	5 cut(s)	473, 486, 853, 910, 974
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	145, 228, 418, 740
NmeAIII	GCCGAG	2 cut(s)	142, 145
NmuCI	GTSAC	1 cut(s)	542
NsiI	ATGCAT	2 cut(s)	420, 907
PcsI	WCGNNNNNNNCGW	2 cut(s)	519, 970
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	449, 824
PinAI	ACCGGT	1 cut(s)	87
PkrI	GCNGC	8 cut(s)	10, 63, 173, 254, 331, 398, 411, 865
Ple19I	CGATCG	1 cut(s)	977
PleI	GAGTC	2 cut(s)	532, 821
PpsI	GAGTC	2 cut(s)	532, 821
Ppu21I	YACGTR	1 cut(s)	767
PshAI	GACNNNNGTC	1 cut(s)	812
PspPI	GGNCC	3 cut(s)	78, 260, 613
PsuI	RGATCY	1 cut(s)	853
PvuI	CGATCG	1 cut(s)	977
RsaI	GTAC	2 cut(s)	769, 980
RsaNI	GTAC	2 cut(s)	768, 979
SaqAI	TTAA	2 cut(s)	312, 899
SatI	GCNGC	8 cut(s)	9, 62, 172, 253, 330, 397, 410, 864
Sau3AI	GATC	5 cut(s)	473, 486, 853, 910, 974
Sau96I	GGNCC	3 cut(s)	78, 260, 613
SchI	GAGTC	2 cut(s)	533, 822
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	3 cut(s)	126, 163, 376
SfaNI	GCATC	3 cut(s)	295, 316, 408
SinI	GGWCC	3 cut(s)	78, 260, 613
SmlI	CTYRAG	2 cut(s)	500, 785
SmoI	CTYRAG	2 cut(s)	500, 785
SnaBI	TACGTA	1 cut(s)	767
Sse9I	AATT	4 cut(s)	321, 607, 660, 792
SsiI	CCGC	7 cut(s)	137, 215, 230, 255, 430, 494, 752
SspMI	CTAG	3 cut(s)	5, 471, 982
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	2 cut(s)	515, 774
TaiI	ACGT	2 cut(s)	732, 769
TaqI	TCGA	3 cut(s)	337, 452, 913
TaqII	GACCGA	2 cut(s)	210, 601
TasI	AATT	4 cut(s)	321, 607, 660, 792
TfiI	GAWTC	2 cut(s)	449, 824
Tru1I	TTAA	2 cut(s)	312, 899
Tru9I	TTAA	2 cut(s)	312, 899
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	8 cut(s)	8, 61, 171, 252, 329, 396, 409, 863
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	5 cut(s)	22, 158, 681, 722, 852
TspGWI	ACGGA	1 cut(s)	517
VneI	GTGCAC	1 cut(s)	372
VpaK11BI	GGWCC	3 cut(s)	78, 260, 613
XapI	RAATTY	1 cut(s)	792
XbaI	TCTAGA	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	3 cut(s)	5, 471, 982
Zsp2I	ATGCAT	2 cut(s)	420, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.