Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003791

Physical Location & Seq

Genomic Coordinates Forward (+)

84771932 .. 84774355

Gene Structure 2424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG617400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGTTGGAAATAGTTCTCAATAGGCCTGTGGATATTCTGAGGAGGTTGTTGGCGTTCTGCTCCCCCAGGTCAGTGTTACAAGACTTCTTCAATCACTACGGAGCTGGTGAGGCTGCTGCGATGTGTTTAATACTAGCAGCTGGGATAGTCCATCCAGAAGTTCATATCAGCAAAGTTGTTGCTCAGAATGCAGCTGAAGCTTTTGAGGACCAAAGACTGGTTCAAAAGGCGGAGATTGTTGAGGAGGCTGAGCCTGATTTTTCAGCTGCACATGAAGGGCTATGTTTATGCTCGGCAAGGCTGCTTTTATCTCTATGGGAACTTCCTTTCGTGGTGGAAAAAGGCGGTTCAGTCATGTGCAGACTATCTCTTGAGGTAATGCAGGTGATACAAAAAAAGATTAGTTCTTTGGAGAATTTTCTGTGGTTGAGGAGGAAGCAAAGGAGGGGCCTTTACGGCCGTGTTACTGGTCTTGGGTACTTGACTGGTTATAGAGACGAATCAGAATACGATGGCAGCTGGTCTAATAACAGGAAGAGATTATTTAGTGATGCAGAGCTTTCAGCCATGGAGGTTAGGGCAATGGAATGTATGAGACAGTTGCTAGTTAGATCGAGTGAAGCTCTAGTCCTGCTCCAACTTCTTTCGCAGCAAGGTCTAATCACTTTCTTGGCTAAGGACTTGGATGCTAATCTGCAGCATGTATTAGTTCAATTGACTTTTCATCAGTTAGTTTGTTCCGAGGAGGGTAACCACCTTGCTACAAGGCTCATATCTGGTCTGATAAAGTATTATACTGATCAAGGCAAGGGGACAGTACATAAAGTTTGTGCAGTACTGCAGGAAGGTTGTCCAAGCTATTACAAGGAGTCTGATCGCAAGTATTATCTAGCTATGGATTGTCTTCAGAGAGCTGTTTTAAATAAAGATGCTGAAGAGATGGAGAAACTTGCCAGAGAAGCCTACAGTTCATTAAGCAAAGTTCCAAAATCTGCTAATTTACAGGTGGTTTGCAAATGGTTTGAGGGTTTGAGGTTTTATGAAGCAGTGGTCCACTTACCTTTACAGAAGGCACAAGCTCTTGACCCCAAAGGTGATGCTTTTAATAACCAAATTGATGCAGCAGTTCGAGAAGATGCAGTTGCTAAACGTGTTCAGTGTTATGAGATTATCATCAGTGCACTGCGTTCTCTAAAAGGTGTACATGTTGGTTCCTCTTCTCGGAACAGACATGTGTGCCAAATTGTTCAGCTTGGCATCCGATTTCCAGACAGGTTATTTCATGACTACTTGTACTATGCTATGATTGATTTCGGCCTTGAAAATGAGCTGTTTGAGTTTGGAGGTCCTAATTTGGTGCCTTTACTACAAAGTGTAGCCGGTGAACCTATACAAGAGGTTCAAGCTGCTATTTCTCCCATTGGTCATTCAGGAGCACTTTTTCCAACTAAAAAAGCCAAATATTGTGAGGTTTTGGCAAGTTACTATGCCTTGAAGGGGCAGCATCGGCTTGCAGCTCACGCATTACAAAGACTGGCAGAGAGGAGCTCAACTGATTCAGAGGATGTTCCTACTCTAGATCAAAGGTGTCAATACTTAACTAGGGCACTCCTACAAGCAAATGTTGCAAGTAACAGTACAGACTTAGTACAGTTGTTGGAAGGAAAGCTTGGTGTTCTCCATTTTCAGATAAAGATCAAAGCGGAACTTGAGGCTTTGCCTGGTGCATCTGAGTCTGTCCAGTGTGGAAGTGACACCAACATTGCACGAGAAAAGGCCAAAGAGGTATCACTAGACTTAAAGAGTCTAAGTGAGCTATACAATGACTATGCTGTTCCATTTCAACTTTGGGAGATATCTCTAGAAATGCTATACTATGCAAGCAATTCCGGTCCTAATGTTGCATATAGTAGCAGTATAAGAGAAGCTTGGACTAAAGTAGTTGATGAAGCACTTTCAAAAGGTGGCGTCGCTGAAGCTTGTTGGGTATTGAAGAGATTTGGTTCTTACGTTCATCATGGAGATATTGGAGCGGGTTTACCCTTACAGACACTGTGCCTCCACCTTGAGAAAGCTGCATTGGAAAGACTGGAATCAGGGGCTGAATCCATCGGAGATGAAGATGTGGCAAGGGCTCTTCTTGCTGCTTCTTCCAAGGGTCCAACTGAGTCTGCATTGTTAAACGCATATGATCAGTTATTATCAAAGAATGGTGCTGTTTCGCAATCGCCAAAGCTCAGGCTATGCCTTCTGCGATCAGTACTAGTGATACTTCATCAGTGGGCAATGTCTCTGTTTGCACACAGAATGAGTACTAGTGCTTATAGACCTTCTATTATTTTGGATGCAGCAAAAAGGTACATGTCTGAGGTCCAAAGATTAGACCTTCCACAAATGCACCAGCAAACTGTGTTAGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0003674 GO:0005198 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005886 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006998 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010256 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0017038 GO:0017056 GO:0030054 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036228 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044611 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0061024 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072657 GO:0090435

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nucleoporin_C Nucleoporin_N

Protein Analysis

807

Amino Acids

89.85

Weight (kDa)

6.45

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoporin_C	PF03177	88 - 792	7.1e-63	Non-repetitive/WGA-negative nucleoporin C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14850
fragaria_vesca	FvH4_4g33560 FvH4_4g33560 FvH4_4g33560
malus_domestica	MD13G1020400.v1.1 MD16G1018600.v1.1 MD16G1018800.v1.1
prunus_persica	Prupe.1G333300_v2.0.a1
pyrus_communis	pycom13g01720 pycom16g01690
rosa_chinensis	RchiOBHm_Chr2g0167011 RchiOBHm_Chr2g0167021 RchiOBHm_Chr4g0443061
rosa_laevigata	RLG00000005957 RLG00000021689
rosa_multiflora	Rmu_co7980658.1_g000001 Rmu_sc0007968.1_g000017 Rmu_sc0008069.1_g000005 Rmu_sc0010966.1_g000010 Rmu_sc0039405.1_g000001 Rmu_sc0039405.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083800 Rroxscaffold_5G00383690
rosa_rugosa	Rorug04G0344100
rosa_samantha	Rh2AG594500 Rh2AG594600 Rh2BG605800 Rh2BG605900 Rh2CG576700 Rh2DG617400 Rh4BG409900 Rh4DG404800
rosa_wichuraiana	Rw2G049490 Rw4G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	373
AccB1I	GGYRCC	1 cut(s)	1357
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccBSI	CCGCTC	1 cut(s)	2033
AciI	CCGC	4 cut(s)	230, 345, 1703, 2033
AcoI	YGGCCR	1 cut(s)	457
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	4 cut(s)	216, 890, 954, 1995
AcyI	GRCGYC	1 cut(s)	1968
AfiI	CCNNNNNNNGG	3 cut(s)	217, 1221, 1497
AflIII	ACRYGT	4 cut(s)	1150, 1204, 1231, 2361
AgsI	TTSAA	9 cut(s)	91, 224, 713, 1322, 1403, 1495, 1844, 1959, 1993
AhlI	ACTAGT	2 cut(s)	2263, 2315
AjnI	CCWGG	2 cut(s)	65, 1720
AjuI	GAANNNNNNNTTGG	6 cut(s)	204, 236, 1653, 1685, 2063, 2095
Alw21I	GWGCWC	3 cut(s)	1183, 1438, 1550
Alw26I	GTCTC	3 cut(s)	489, 589, 2295
Alw44I	GTGCAC	1 cut(s)	1179
AlwNI	CAGNNNCTG	2 cut(s)	2053, 2102
AoxI	GGCC	5 cut(s)	23, 448, 457, 1315, 1776
ApaLI	GTGCAC	1 cut(s)	1179
ApoI	RAATTY	1 cut(s)	415
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	7 cut(s)	208, 448, 1051, 1346, 1892, 2159, 2371
AsuHPI	GGTGA	4 cut(s)	119, 397, 1106, 1394
AvaII	GGWCC	6 cut(s)	208, 1051, 1346, 1892, 2159, 2371
BaeGI	GKGCMC	2 cut(s)	1183, 1609
BanI	GGYRCC	1 cut(s)	1357
BanII	GRGCYC	2 cut(s)	1550, 2137
BauI	CACGAG	1 cut(s)	1767
BbsI	GAAGAC	1 cut(s)	896
Bbv12I	GWGCWC	3 cut(s)	1183, 1438, 1550
BccI	CCATC	4 cut(s)	159, 506, 934, 2117
BceAI	ACGGC	2 cut(s)	444, 472
BciT130I	CCWGG	2 cut(s)	67, 1722
BclI	TGATCA	2 cut(s)	799, 2191
BcoDI	GTCTC	3 cut(s)	489, 589, 2295
BcuI	ACTAGT	2 cut(s)	2263, 2315
BfmI	CTRYAG	3 cut(s)	695, 839, 964
BfuAI	ACCTGC	1 cut(s)	373
BglI	GCCNNNNNGGC	1 cut(s)	456
BlpI	GCTNAGC	1 cut(s)	249
BmcAI	AGTACT	3 cut(s)	837, 2262, 2314
Bme1390I	CCNGG	2 cut(s)	67, 1722
Bme18I	GGWCC	6 cut(s)	208, 1051, 1346, 1892, 2159, 2371
BmgT120I	GGNCC	7 cut(s)	208, 448, 1051, 1346, 1892, 2159, 2371
BmiI	GGNNCC	4 cut(s)	449, 1213, 1359, 2160
BmrFI	CCNGG	2 cut(s)	67, 1722
BpiI	GAAGAC	1 cut(s)	896
BplI	GAGNNNNNCTC	4 cut(s)	607, 639, 1532, 1564
Bpu10I	CCTNAGC	2 cut(s)	675, 2237
Bpu1102I	GCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	3 cut(s)	392, 1730, 2087
BsaBI	GATNNNNATC	3 cut(s)	690, 1172, 1694
BsaHI	GRCGYC	1 cut(s)	1968
BsaJI	CCNNGG	4 cut(s)	65, 567, 741, 2154
BsaWI	WCCGGW	1 cut(s)	1889
BsaXI	ACNNNNNCTCC	2 cut(s)	2043, 2073
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 1221, 1497
Bse118I	RCCGGY	1 cut(s)	1379
Bse1I	ACTGG	6 cut(s)	222, 472, 490, 1539, 1741, 2094
Bse3DI	GCAATG	3 cut(s)	588, 1761, 2292
Bse8I	GATNNNNATC	3 cut(s)	690, 1172, 1694
BseBI	CCWGG	2 cut(s)	67, 1722
BseDI	CCNNGG	4 cut(s)	65, 567, 741, 2154
BseGI	GGATG	5 cut(s)	151, 691, 1257, 1570, 2350
BseJI	GATNNNNATC	3 cut(s)	690, 1172, 1694
BseLI	CCNNNNNNNGG	3 cut(s)	217, 1221, 1497
BseMI	GCAATG	3 cut(s)	588, 1761, 2292
BseMII	CTCAG	7 cut(s)	29, 197, 240, 1722, 2157, 2251, 2358
BseNI	ACTGG	6 cut(s)	222, 472, 490, 1539, 1741, 2094
BseRI	GAGGAG	5 cut(s)	55, 257, 445, 758, 1558
BseSI	GKGCMC	2 cut(s)	1183, 1609
BseX3I	CGGCCG	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	140
BsgI	GTGCAG	3 cut(s)	252, 379, 852
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	5 cut(s)	25, 450, 459, 1317, 1778
BshNI	GGYRCC	1 cut(s)	1357
BsiEI	CGRYCG	1 cut(s)	460
BsiHKAI	GWGCWC	3 cut(s)	1183, 1438, 1550
BsiSI	CCGG	2 cut(s)	1380, 1890
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	3 cut(s)	217, 1221, 1497
BsmAI	GTCTC	3 cut(s)	489, 589, 2295
BsmBI	CGTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	826
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	5 cut(s)	25, 450, 459, 1317, 1778
Bsp1286I	GDGCHC	5 cut(s)	1183, 1438, 1550, 1609, 2137
Bsp1407I	TGTACA	1 cut(s)	1201
Bsp143I	GATC	7 cut(s)	611, 799, 874, 1579, 1695, 2191, 2255
Bsp1720I	GCTNAGC	1 cut(s)	249
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	4 cut(s)	230, 345, 1703, 2033
BspANI	GGCC	5 cut(s)	25, 450, 459, 1317, 1778
BspCNI	CTCAG	7 cut(s)	30, 196, 241, 1723, 2158, 2250, 2359
BspHI	TCATGA	1 cut(s)	1282
BspLI	GGNNCC	4 cut(s)	449, 1213, 1359, 2160
BspMAI	CTGCAG	2 cut(s)	699, 843
BspMI	ACCTGC	1 cut(s)	373
BspQI	GCTCTTC	1 cut(s)	2142
BspT107I	GGYRCC	1 cut(s)	1357
BsrBI	CCGCTC	1 cut(s)	2033
BsrDI	GCAATG	3 cut(s)	588, 1761, 2292
BsrFI	RCCGGY	1 cut(s)	1379
BsrGI	TGTACA	1 cut(s)	1201
BsrI	ACTGG	6 cut(s)	222, 472, 490, 1539, 1741, 2094
BssAI	RCCGGY	1 cut(s)	1379
BssECI	CCNNGG	4 cut(s)	65, 567, 741, 2154
BssMI	GATC	7 cut(s)	611, 799, 874, 1579, 1695, 2191, 2255
BssNI	GRCGYC	1 cut(s)	1968
BssSI	CACGAG	1 cut(s)	1767
BssT1I	CCWWGG	2 cut(s)	567, 2154
Bst2BI	CACGAG	1 cut(s)	1767
Bst2UI	CCWGG	2 cut(s)	67, 1722
Bst4CI	ACNGT	7 cut(s)	600, 817, 968, 1637, 1653, 2055, 2410
Bst6I	CTCTTC	5 cut(s)	530, 930, 1222, 1988, 2142
BstACI	GRCGYC	1 cut(s)	1968
BstAPI	GCANNNNNTGC	1 cut(s)	1625
BstAUI	TGTACA	1 cut(s)	1201
BstC8I	GCNNGC	2 cut(s)	1512, 1882
BstDSI	CCRYGG	1 cut(s)	567
BstEII	GGTNACC	1 cut(s)	749
BstF5I	GGATG	5 cut(s)	151, 691, 1257, 1570, 2350
BstKTI	GATC	7 cut(s)	614, 802, 877, 1582, 1698, 2194, 2258
BstMAI	GTCTC	3 cut(s)	489, 589, 2295
BstMBI	GATC	7 cut(s)	611, 799, 874, 1579, 1695, 2191, 2255
BstMCI	CGRYCG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	9 cut(s)	110, 188, 197, 456, 959, 1507, 1520, 1625, 2141
BstNI	CCWGG	2 cut(s)	67, 1722
BstNSI	RCATGY	4 cut(s)	704, 1208, 1235, 2365
BstPI	GGTNACC	1 cut(s)	749
BstSCI	CCNGG	2 cut(s)	65, 1720
BstSFI	CTRYAG	3 cut(s)	695, 839, 964
BstSLI	GKGCMC	2 cut(s)	1183, 1609
BstV2I	GAAGAC	1 cut(s)	896
BstZI	CGGCCG	1 cut(s)	457
BsuRI	GGCC	5 cut(s)	25, 450, 459, 1317, 1778
BtgI	CCRYGG	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	5 cut(s)	151, 691, 1257, 1570, 2350
BtsI	GCAGTG	2 cut(s)	1053, 1181
BtsIMutI	CAGTG	8 cut(s)	78, 1053, 1163, 1181, 1183, 1748, 2051, 2285
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	2 cut(s)	1512, 1882
CaiI	CAGNNNCTG	2 cut(s)	2053, 2102
CciI	TCATGA	1 cut(s)	1282
Cfr10I	RCCGGY	1 cut(s)	1379
Cfr13I	GGNCC	7 cut(s)	208, 448, 1051, 1346, 1892, 2159, 2371
CseI	GACGC	1 cut(s)	1957
CviAII	CATG	9 cut(s)	272, 355, 568, 701, 1205, 1232, 1283, 2018, 2362
DpnI	GATC	7 cut(s)	613, 801, 876, 1581, 1697, 2193, 2257
DpnII	GATC	7 cut(s)	611, 799, 874, 1579, 1695, 2191, 2255
DraI	TTTAAA	1 cut(s)	921
EaeI	YGGCCR	1 cut(s)	457
EagI	CGGCCG	1 cut(s)	457
Eam1104I	CTCTTC	5 cut(s)	530, 930, 1222, 1988, 2142
EarI	CTCTTC	5 cut(s)	530, 930, 1222, 1988, 2142
EciI	GGCGGA	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	1548
EclXI	CGGCCG	1 cut(s)	457
Eco130I	CCWWGG	2 cut(s)	567, 2154
Eco147I	AGGCCT	1 cut(s)	25
Eco24I	GRGCYC	2 cut(s)	1550, 2137
Eco32I	GATATC	1 cut(s)	1857
Eco47I	GGWCC	6 cut(s)	208, 1051, 1346, 1892, 2159, 2371
Eco52I	CGGCCG	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	1548
Eco57I	CTGAAG	4 cut(s)	216, 890, 954, 1995
Eco91I	GGTNACC	1 cut(s)	749
EcoICRI	GAGCTC	1 cut(s)	1548
EcoO109I	RGGNCCY	2 cut(s)	448, 1346
EcoO65I	GGTNACC	1 cut(s)	749
EcoRII	CCWGG	2 cut(s)	65, 1720
EcoRV	GATATC	1 cut(s)	1857
EcoT14I	CCWWGG	2 cut(s)	567, 2154
EcoT38I	GRGCYC	2 cut(s)	1550, 2137
ErhI	CCWWGG	2 cut(s)	567, 2154
Esp3I	CGTCTC	1 cut(s)	489
FaeI	CATG	9 cut(s)	275, 358, 571, 704, 1208, 1235, 1286, 2021, 2365
FalI	AAGNNNNNCTT	6 cut(s)	1653, 1685, 1692, 1724, 1912, 1944
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	9 cut(s)	271, 354, 567, 700, 1204, 1231, 1282, 2017, 2361
FauI	CCCGC	1 cut(s)	2026
FauNDI	CATATG	1 cut(s)	2188
FbaI	TGATCA	2 cut(s)	799, 2191
FokI	GGATG	5 cut(s)	138, 698, 1244, 1577, 2357
FriOI	GRGCYC	2 cut(s)	1550, 2137
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	5 cut(s)	25, 450, 459, 1317, 1778
HapII	CCGG	2 cut(s)	1380, 1890
HgaI	GACGC	1 cut(s)	1957
Hin1I	GRCGYC	1 cut(s)	1968
Hin1II	CATG	9 cut(s)	275, 358, 571, 704, 1208, 1235, 1286, 2021, 2365
HindIII	AAGCTT	4 cut(s)	198, 1667, 1926, 1977
HinfI	GANTC	8 cut(s)	500, 869, 1556, 1733, 1804, 2093, 2105, 2168
HpaII	CCGG	2 cut(s)	1380, 1890
HphI	GGTGA	4 cut(s)	119, 397, 1106, 1394
Hpy166II	GTNNAC	5 cut(s)	1054, 1181, 1202, 1385, 2039
Hpy188III	TCNNGA	9 cut(s)	155, 371, 1082, 1130, 1268, 1283, 1431, 1577, 1862
Hpy8I	GTNNAC	5 cut(s)	1054, 1181, 1202, 1385, 2039
Hpy99I	CGWCG	1 cut(s)	1973
HpyAV	CCTTC	8 cut(s)	269, 839, 1063, 1489, 1655, 2258, 2340, 2396
HpyCH4III	ACNGT	7 cut(s)	600, 817, 968, 1637, 1653, 2055, 2410
HpyCH4IV	ACGT	2 cut(s)	1150, 2010
HpyF10VI	GCNNNNNNNGC	9 cut(s)	110, 188, 197, 456, 959, 1507, 1520, 1625, 2141
HpySE526I	ACGT	2 cut(s)	1150, 2010
Hsp92I	GRCGYC	1 cut(s)	1968
Hsp92II	CATG	9 cut(s)	275, 358, 571, 704, 1208, 1235, 1286, 2021, 2365
Ksp22I	TGATCA	2 cut(s)	799, 2191
Kzo9I	GATC	7 cut(s)	611, 799, 874, 1579, 1695, 2191, 2255
LguI	GCTCTTC	1 cut(s)	2142
LmnI	GCTCC	6 cut(s)	65, 101, 639, 1433, 1545, 2030
MaeII	ACGT	2 cut(s)	1150, 2010
MaeIII	GTNAC	6 cut(s)	75, 463, 749, 1481, 1631, 1751
MalI	GATC	7 cut(s)	613, 801, 876, 1581, 1697, 2193, 2257
MbiI	CCGCTC	1 cut(s)	2033
MboI	GATC	7 cut(s)	611, 799, 874, 1579, 1695, 2191, 2255
MfeI	CAATTG	1 cut(s)	713
MhlI	GDGCHC	5 cut(s)	1183, 1438, 1550, 1609, 2137
MluCI	AATT	7 cut(s)	415, 713, 997, 1113, 1242, 1351, 1885
MlyI	GAGTC	4 cut(s)	878, 1742, 1813, 2177
MmeI	TCCRAC	4 cut(s)	661, 1469, 1638, 2186
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	7 cut(s)	128, 920, 974, 1104, 1598, 1799, 2180
MspA1I	CMGCKG	4 cut(s)	140, 194, 266, 519
MspI	CCGG	2 cut(s)	1380, 1890
MspR9I	CCNGG	2 cut(s)	67, 1722
MunI	CAATTG	1 cut(s)	713
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	2 cut(s)	67, 1722
MwoI	GCNNNNNNNGC	9 cut(s)	110, 188, 197, 456, 959, 1507, 1520, 1625, 2141
NcoI	CCATGG	1 cut(s)	567
NdeI	CATATG	1 cut(s)	2188
NdeII	GATC	7 cut(s)	611, 799, 874, 1579, 1695, 2191, 2255
NlaIII	CATG	9 cut(s)	275, 358, 571, 704, 1208, 1235, 1286, 2021, 2365
NlaIV	GGNNCC	4 cut(s)	449, 1213, 1359, 2160
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	1751
NspI	RCATGY	4 cut(s)	704, 1208, 1235, 2365
PagI	TCATGA	1 cut(s)	1282
PaqCI	CACCTGC	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	25
PciI	ACATGT	3 cut(s)	1204, 1231, 2361
PciSI	GCTCTTC	1 cut(s)	2142
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	4 cut(s)	500, 1556, 2093, 2105
PflMI	CCANNNNNTGG	1 cut(s)	217
PleI	GAGTC	4 cut(s)	877, 1741, 1812, 2176
PpsI	GAGTC	4 cut(s)	877, 1741, 1812, 2176
PpuMI	RGGWCCY	1 cut(s)	1346
PscI	ACATGT	3 cut(s)	1204, 1231, 2361
Psp124BI	GAGCTC	1 cut(s)	1550
Psp5II	RGGWCCY	1 cut(s)	1346
Psp6I	CCWGG	2 cut(s)	65, 1720
PspEI	GGTNACC	1 cut(s)	749
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	2 cut(s)	65, 1720
PspN4I	GGNNCC	4 cut(s)	449, 1213, 1359, 2160
PspPI	GGNCC	7 cut(s)	208, 448, 1051, 1346, 1892, 2159, 2371
PspPPI	RGGWCCY	1 cut(s)	1346
PstI	CTGCAG	2 cut(s)	699, 843
PstNI	CAGNNNCTG	2 cut(s)	2053, 2102
PvuII	CAGCTG	4 cut(s)	140, 194, 266, 519
SacI	GAGCTC	1 cut(s)	1550
SapI	GCTCTTC	1 cut(s)	2142
SaqAI	TTAA	7 cut(s)	128, 920, 974, 1104, 1598, 1799, 2180
Sau3AI	GATC	7 cut(s)	611, 799, 874, 1579, 1695, 2191, 2255
Sau96I	GGNCC	7 cut(s)	208, 448, 1051, 1346, 1892, 2159, 2371
ScaI	AGTACT	3 cut(s)	837, 2262, 2314
SchI	GAGTC	4 cut(s)	878, 1742, 1813, 2177
ScrFI	CCNGG	2 cut(s)	67, 1722
SduI	GDGCHC	5 cut(s)	1183, 1438, 1550, 1609, 2137
SfcI	CTRYAG	3 cut(s)	695, 839, 964
SfiI	GGCCNNNNNGGCC	1 cut(s)	456
SinI	GGWCC	6 cut(s)	208, 1051, 1346, 1892, 2159, 2371
SmlI	CTYRAG	3 cut(s)	371, 1709, 2066
SmoI	CTYRAG	3 cut(s)	371, 1709, 2066
SpeI	ACTAGT	2 cut(s)	2263, 2315
Sse9I	AATT	7 cut(s)	415, 713, 997, 1113, 1242, 1351, 1885
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	4 cut(s)	230, 345, 1703, 2033
SspI	AATATT	1 cut(s)	1463
SstI	GAGCTC	1 cut(s)	1550
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	65, 1720
StyI	CCWWGG	2 cut(s)	567, 2154
TaaI	ACNGT	7 cut(s)	600, 817, 968, 1637, 1653, 2055, 2410
TaiI	ACGT	2 cut(s)	1153, 2013
TaqI	TCGA	2 cut(s)	614, 1129
TasI	AATT	7 cut(s)	415, 713, 997, 1113, 1242, 1351, 1885
TatI	WGTACW	8 cut(s)	817, 835, 1201, 1293, 1637, 1648, 2260, 2312
TfiI	GAWTC	4 cut(s)	500, 1556, 2093, 2105
Tru1I	TTAA	7 cut(s)	128, 920, 974, 1104, 1598, 1799, 2180
Tru9I	TTAA	7 cut(s)	128, 920, 974, 1104, 1598, 1799, 2180
TscAI	CASTG	8 cut(s)	78, 1053, 1163, 1183, 1188, 1748, 2058, 2285
TseFI	GTSAC	1 cut(s)	1751
Tsp45I	GTSAC	1 cut(s)	1751
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	8 cut(s)	78, 1053, 1163, 1183, 1188, 1748, 2058, 2285
Van91I	CCANNNNNTGG	1 cut(s)	217
VneI	GTGCAC	1 cut(s)	1179
VpaK11BI	GGWCC	6 cut(s)	208, 1051, 1346, 1892, 2159, 2371
XapI	RAATTY	1 cut(s)	415
XbaI	TCTAGA	2 cut(s)	1576, 1861
XceI	RCATGY	4 cut(s)	704, 1208, 1235, 2365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1845
XmnI	GAANNNNTTC	1 cut(s)	12
ZrmI	AGTACT	3 cut(s)	837, 2262, 2314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.