Prupe.1G093400_v2.0.a1

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
7147855 .. 7148501
647 bp
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UTR
Exon/CDS
Intron
Prupe.1G093400.1

Sequence Viewer

Length: 267 bp
ATGAACCAAACAGATAACGCATCCTTTGAAAGATTTTGTCGAGAAACCACAGCCACATTTTGGCACTATCATGGGGGATGCCTAATGGGAAAGGTGGTGGATGGAGATTTGCGAGTCATGGGAATCAATGCATTACGTGTTGTTGATGGCTCTACATTTAATTTGTCACCAGGGACCAATCCTCAAGCCACCCTCATGATCTTAGGCAGGTATGCTGGCCTTAAGATGTTGAAAGAAAGATCAGCTTGCAAGGGATGCAATTCATAA

Protein Analysis

89

Amino Acids

9.66

Weight (kDa)

8.84

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 198
AccB7I CCANNNNNTGG 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 60
AflII CTTAAG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 2 cut(s) 29, 232
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
AoxI GGCC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 159
AvaII GGWCC 1 cut(s) 174
BccI CCATC 2 cut(s) 95, 140
BciT130I CCWGG 1 cut(s) 171
BfrI CTTAAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 3 cut(s) 29, 68, 245
BpuEI CTTGAG 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 4 cut(s) 20, 83, 106, 260
BseLI CCNNNNNNNGG 1 cut(s) 60
BshFI GGCC 1 cut(s) 219
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 198, 239
BspANI GGCC 1 cut(s) 219
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 198
BspTI CTTAAG 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 2 cut(s) 198, 239
Bst2UI CCWGG 1 cut(s) 171
BstAFI CTTAAG 1 cut(s) 221
BstAPI GCANNNNNTGC 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 217, 247
BstDEI CTNAG 1 cut(s) 202
BstF5I GGATG 4 cut(s) 20, 83, 106, 260
BstKTI GATC 2 cut(s) 201, 242
BstMBI GATC 2 cut(s) 198, 239
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 4 cut(s) 20, 83, 106, 260
BveI ACCTGC 1 cut(s) 198
Cac8I GCNNGC 2 cut(s) 217, 247
CciI TCATGA 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 174
CviAII CATG 3 cut(s) 71, 118, 196
CviJI RGCY 5 cut(s) 53, 150, 188, 219, 245
CviKI_1 RGCY 5 cut(s) 53, 150, 188, 219, 245
DdeI CTNAG 1 cut(s) 202
DpnI GATC 2 cut(s) 200, 241
DpnII GATC 2 cut(s) 198, 239
Eco47I GGWCC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 133
FaeI CATG 3 cut(s) 74, 121, 199
FaiI YATR 5 cut(s) 72, 119, 197, 213, 265
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 1 cut(s) 187
FatI CATG 3 cut(s) 70, 117, 195
FokI GGATG 3 cut(s) 7, 90, 113
HaeIII GGCC 1 cut(s) 219
Hin1II CATG 3 cut(s) 74, 121, 199
HinfI GANTC 2 cut(s) 114, 123
HphI GGTGA 1 cut(s) 159
Hpy188III TCNNGA 2 cut(s) 41, 196
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 131, 249, 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 1 cut(s) 202
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 3 cut(s) 74, 121, 199
Kzo9I GATC 2 cut(s) 198, 239
LpnPI CCDG 4 cut(s) 156, 183, 193, 201
LweI GCATC 3 cut(s) 29, 68, 245
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 165
MalI GATC 2 cut(s) 200, 241
MboI GATC 2 cut(s) 198, 239
MluCI AATT 2 cut(s) 160, 259
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 2 cut(s) 192, 203
Mph1103I ATGCAT 1 cut(s) 133
MseI TTAA 2 cut(s) 159, 222
MslI CAYNNNNRTG 2 cut(s) 69, 194
MspCI CTTAAG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 255
NdeII GATC 2 cut(s) 198, 239
NlaIII CATG 3 cut(s) 74, 121, 199
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 165
NsiI ATGCAT 1 cut(s) 133
PagI TCATGA 1 cut(s) 195
PfeI GAWTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 60
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Ppu21I YACGTR 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 174
RseI CAYNNNNRTG 2 cut(s) 69, 194
SaqAI TTAA 2 cut(s) 159, 222
Sau3AI GATC 2 cut(s) 198, 239
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 171
SetI ASST 4 cut(s) 96, 139, 212, 247
SfaNI GCATC 3 cut(s) 29, 68, 245
SinI GGWCC 1 cut(s) 174
SmiMI CAYNNNNRTG 2 cut(s) 69, 194
SmlI CTYRAG 2 cut(s) 183, 221
SmoI CTYRAG 2 cut(s) 183, 221
Sse9I AATT 2 cut(s) 160, 259
StyD4I CCNGG 1 cut(s) 169
TaiI ACGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 40
TasI AATT 2 cut(s) 160, 259
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 2 cut(s) 159, 222
Tru9I TTAA 2 cut(s) 159, 222
TseFI GTSAC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 2 cut(s) 17, 252
Van91I CCANNNNNTGG 1 cut(s) 60
Vha464I CTTAAG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 174
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.