Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004388.1

Orthogroup ID

OG0005929

Physical Location & Seq

Genomic Coordinates Forward (+)

35720 .. 38778

Gene Structure 3059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004388.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atggacggcgtgtaccattcttgggtcgagcttcaaacttggggtaccaaagtgatagttttggatagtcgagtactgaagttaggagttggccttagttcgggttgctctgccacaggaattatatacagtgattctgacgggaggtcacaccgggcatttgtacgtggtaaaggagaggttatattgagtgctggagcgattgggagccctcaacttctgctactcagtggtgttggtcctcaatcctacctttcgtctcttaaaatcccggtcatctaccctcaacccaacgttggacagtttatgttcgacaatcctcgtaattccataaacattttgcccccatttctacttcagccttcatttctacaaattgctggaattgcaactgatttctacatagaggctctctcttatatcgtgccaaataattccagcaatgtgactttggcaaatattgcttcgaaagtacctggacccttatcatatggttctctccggttgcaatcatcttctgacgtgagagttgggccgaatgtcagcttcaactactttgcacatccggccgaccttgctcgctgcgttaagggactgagaaaggttgcagacttattaaagacaaactcgttgaaaccatttaggtctcaaaattcttcgggtacggaaggttttaacttttatggaccatctctacctacgaaccaagcagatgatgctccctttgaaaccttctgtagaactacagttgccacattttggcattaccatggcggatgccttgtgggaaaggtggtcgatagcagtttgcgagtcattgggatcaattcattacgtgttgttgatggttccacattcaatttctcaccaggaaccaatccccaggccaccgttatgatgttaggcaggtatgttaattatattcttatgattttttggattaactacggccacaagatactcttgacttcctaccacctagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0031410 GO:0031982 GO:0033095 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

328

Amino Acids

35.69

Weight (kDa)

9.21

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005929)

Species	Orthologous Gene IDs
malus_domestica	MD00G1005200.v1.1 MD03G1091500.v1.1 MD03G1091800.v1.1
prunus_persica	Prupe.1G093400_v2.0.a1 Prupe.3G029300_v2.0.a1
pyrus_communis	pycom10g23320
rosa_chinensis	RchiOBHm_Chr1g0337911 RchiOBHm_Chr1g0376511 RchiOBHm_Chr2g0095811 RchiOBHm_Chr2g0103621
rosa_laevigata	RLG00000016596 RLG00000017345
rosa_multiflora	Rmu_co8084336.1_g000001 Rmu_co8272793.1_g000001 Rmu_sc0001530.1_g000021 Rmu_sc0004388.1_g000008
rosa_roxburghii	Rroxscaffold_2G00146080
rosa_samantha	Rh1AG408100 Rh1BG371800 Rh1BG371900 Rh1CG385700 Rh1DG402900 Rh2AG164500 Rh2BG171600 Rh2CG171100 Rh2DG103400 Rh2DG169900 Rh4CG129100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	897
Acc65I	GGTACC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	759
AciI	CCGC	1 cut(s)	774
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	1 cut(s)	830
AcoI	YGGCCR	2 cut(s)	567, 949
AcsI	RAATTY	1 cut(s)	652
AcuI	CTGAAG	2 cut(s)	98, 341
AfaI	GTAC	6 cut(s)	14, 46, 75, 165, 474, 664
AfiI	CCNNNNNNNGG	4 cut(s)	22, 100, 296, 759
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	5 cut(s)	35, 550, 634, 728, 859
AhdI	GACNNNNNGTC	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	523
AjnI	CCWGG	3 cut(s)	475, 868, 882
AluBI	AGCT	2 cut(s)	31, 546
AluI	AGCT	2 cut(s)	31, 546
Alw26I	GTCTC	2 cut(s)	264, 651
AlwI	GGATC	1 cut(s)	830
AoxI	GGCC	5 cut(s)	91, 533, 567, 885, 949
ApeKI	GCWGC	1 cut(s)	582
ApoI	RAATTY	1 cut(s)	652
Asp718I	GGTACC	1 cut(s)	44
AspS9I	GGNCC	4 cut(s)	239, 479, 533, 686
AsuC2I	CCSGG	2 cut(s)	155, 272
AsuHPI	GGTGA	1 cut(s)	858
AsuII	TTCGAA	1 cut(s)	467
AvaII	GGWCC	3 cut(s)	239, 479, 686
BaeI	ACNNNNGTAYC	2 cut(s)	36, 69
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	569
BccI	CCATC	2 cut(s)	697, 839
BceAI	ACGGC	2 cut(s)	22, 964
BciT130I	CCWGG	3 cut(s)	477, 870, 884
BcnI	CCSGG	2 cut(s)	155, 272
BcoDI	GTCTC	2 cut(s)	264, 651
BfaI	CTAG	1 cut(s)	980
BfmI	CTRYAG	2 cut(s)	736, 744
BfuAI	ACCTGC	1 cut(s)	897
BisI	GCNGC	1 cut(s)	583
BlsI	GCNGC	1 cut(s)	584
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	5 cut(s)	155, 272, 477, 870, 884
Bme18I	GGWCC	3 cut(s)	239, 479, 686
BmeRI	GACNNNNNGTC	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	523
BmgT120I	GGNCC	4 cut(s)	239, 479, 533, 686
BmiI	GGNNCC	5 cut(s)	46, 209, 481, 850, 874
BmrFI	CCNGG	5 cut(s)	155, 272, 477, 870, 884
BmsI	GCATC	2 cut(s)	706, 767
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BpmI	CTGGAG	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	467
BpuMI	CCSGG	2 cut(s)	155, 272
BsaAI	YACGTR	2 cut(s)	167, 836
BsaI	GGTCTC	1 cut(s)	651
BsaJI	CCNNGG	2 cut(s)	769, 882
BsaWI	WCCGGW	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 100, 296, 759
Bse3DI	GCAATG	1 cut(s)	448
BseBI	CCWGG	3 cut(s)	477, 870, 884
BseDI	CCNNGG	2 cut(s)	769, 882
BseGI	GGATG	2 cut(s)	562, 782
BseLI	CCNNNNNNNGG	4 cut(s)	22, 100, 296, 759
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	241, 587
BseX3I	CGGCCG	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	569
Bsh1285I	CGRYCG	1 cut(s)	570
BshFI	GGCC	5 cut(s)	93, 535, 569, 887, 951
BshNI	GGYRCC	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	570
BsiSI	CCGG	4 cut(s)	154, 272, 502, 566
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	4 cut(s)	22, 100, 296, 759
BsmAI	GTCTC	2 cut(s)	264, 651
BsmBI	CGTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	5 cut(s)	93, 535, 569, 887, 951
Bso31I	GGTCTC	1 cut(s)	651
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	822
Bsp19I	CCATGG	1 cut(s)	769
BspACI	CCGC	1 cut(s)	774
BspANI	GGCC	5 cut(s)	93, 535, 569, 887, 951
BspCNI	CTCAG	2 cut(s)	240, 588
BspLI	GGNNCC	5 cut(s)	46, 209, 481, 850, 874
BspMI	ACCTGC	1 cut(s)	897
BspPI	GGATC	1 cut(s)	830
BspT104I	TTCGAA	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	448
BssECI	CCNNGG	2 cut(s)	769, 882
BssMI	GATC	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	769
Bst2UI	CCWGG	3 cut(s)	477, 870, 884
Bst4CI	ACNGT	4 cut(s)	131, 303, 748, 892
BstAPI	GCANNNNNTGC	2 cut(s)	461, 716
BstBAI	YACGTR	2 cut(s)	167, 836
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	580
BstDEI	CTNAG	3 cut(s)	95, 227, 596
BstDSI	CCRYGG	1 cut(s)	769
BstF5I	GGATG	2 cut(s)	562, 782
BstKTI	GATC	1 cut(s)	825
BstMAI	GTCTC	2 cut(s)	264, 651
BstMBI	GATC	1 cut(s)	822
BstMCI	CGRYCG	1 cut(s)	570
BstMWI	GCNNNNNNNGC	5 cut(s)	386, 461, 566, 575, 716
BstNI	CCWGG	3 cut(s)	477, 870, 884
BstSCI	CCNGG	5 cut(s)	153, 270, 475, 868, 882
BstSFI	CTRYAG	2 cut(s)	736, 744
BstV1I	GCAGC	1 cut(s)	569
BstZI	CGGCCG	1 cut(s)	567
BsuRI	GGCC	5 cut(s)	93, 535, 569, 887, 951
BtgI	CCRYGG	1 cut(s)	769
BtrI	CACGTC	1 cut(s)	523
BtsCI	GGATG	2 cut(s)	562, 782
BtsIMutI	CAGTG	2 cut(s)	136, 235
BveI	ACCTGC	1 cut(s)	897
Cac8I	GCNNGC	1 cut(s)	580
Cfr13I	GGNCC	4 cut(s)	239, 479, 533, 686
Csp6I	GTAC	6 cut(s)	13, 45, 74, 164, 473, 663
CviAII	CATG	1 cut(s)	770
CviQI	GTAC	6 cut(s)	13, 45, 74, 164, 473, 663
DdeI	CTNAG	3 cut(s)	95, 227, 596
DpnI	GATC	1 cut(s)	824
DpnII	GATC	1 cut(s)	822
DriI	GACNNNNNGTC	1 cut(s)	145
EaeI	YGGCCR	2 cut(s)	567, 949
EagI	CGGCCG	1 cut(s)	567
Eam1105I	GACNNNNNGTC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	789
EclXI	CGGCCG	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	769
Eco24I	GRGCYC	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	651
Eco47I	GGWCC	3 cut(s)	239, 479, 686
Eco52I	CGGCCG	1 cut(s)	567
Eco57I	CTGAAG	2 cut(s)	98, 341
EcoRII	CCWGG	3 cut(s)	475, 868, 882
EcoT14I	CCWWGG	1 cut(s)	769
EcoT38I	GRGCYC	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	769
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	1 cut(s)	773
FalI	AAGNNNNNCTT	2 cut(s)	947, 979
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	1 cut(s)	769
FauNDI	CATATG	1 cut(s)	490
Fnu4HI	GCNGC	1 cut(s)	583
FokI	GGATG	2 cut(s)	549, 789
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	583
FspBI	CTAG	1 cut(s)	980
GluI	GCNGC	1 cut(s)	583
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	5 cut(s)	93, 535, 569, 887, 951
HapII	CCGG	4 cut(s)	154, 272, 502, 566
Hin1II	CATG	1 cut(s)	773
HinfI	GANTC	2 cut(s)	134, 813
HpaII	CCGG	4 cut(s)	154, 272, 502, 566
HphI	GGTGA	1 cut(s)	858
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	139, 520
Hpy188III	TCNNGA	1 cut(s)	964
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	372, 662, 742
HpyCH4III	ACNGT	4 cut(s)	131, 303, 748, 892
HpyCH4IV	ACGT	4 cut(s)	166, 294, 522, 835
HpyCH4V	TGCA	4 cut(s)	389, 508, 560, 608
HpyF10VI	GCNNNNNNNGC	5 cut(s)	386, 461, 566, 575, 716
HpyF3I	CTNAG	3 cut(s)	95, 227, 596
HpySE526I	ACGT	4 cut(s)	166, 294, 522, 835
Hsp92II	CATG	1 cut(s)	773
KpnI	GGTACC	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	822
LmnI	GCTCC	3 cut(s)	197, 207, 724
Lsp1109I	GCAGC	1 cut(s)	569
LweI	GCATC	2 cut(s)	706, 767
MaeI	CTAG	1 cut(s)	980
MaeII	ACGT	4 cut(s)	166, 294, 522, 835
MaeIII	GTNAC	2 cut(s)	147, 445
MalI	GATC	1 cut(s)	824
MboI	GATC	1 cut(s)	822
MboII	GAAGA	2 cut(s)	507, 648
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	9 cut(s)	120, 325, 375, 384, 433, 652, 826, 859, 916
MlyI	GAGTC	1 cut(s)	822
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	7 cut(s)	138, 172, 222, 252, 294, 330, 400
MseI	TTAA	7 cut(s)	264, 588, 617, 675, 915, 942, 985
MslI	CAYNNNNRTG	2 cut(s)	768, 893
MspI	CCGG	4 cut(s)	154, 272, 502, 566
MspR9I	CCNGG	5 cut(s)	155, 272, 477, 870, 884
MvaI	CCWGG	3 cut(s)	477, 870, 884
MwoI	GCNNNNNNNGC	5 cut(s)	386, 461, 566, 575, 716
NciI	CCSGG	2 cut(s)	155, 272
NcoI	CCATGG	1 cut(s)	769
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	1 cut(s)	822
NlaIII	CATG	1 cut(s)	773
NlaIV	GGNNCC	5 cut(s)	46, 209, 481, 850, 874
NmuCI	GTSAC	2 cut(s)	147, 445
NspV	TTCGAA	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	759
PkrI	GCNGC	1 cut(s)	584
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
Ppu21I	YACGTR	2 cut(s)	167, 836
Psp1406I	AACGTT	1 cut(s)	294
Psp6I	CCWGG	3 cut(s)	475, 868, 882
PspGI	CCWGG	3 cut(s)	475, 868, 882
PspN4I	GGNNCC	5 cut(s)	46, 209, 481, 850, 874
PspPI	GGNCC	4 cut(s)	239, 479, 533, 686
RsaI	GTAC	6 cut(s)	14, 46, 75, 165, 474, 664
RsaNI	GTAC	6 cut(s)	13, 45, 74, 164, 473, 663
RseI	CAYNNNNRTG	2 cut(s)	768, 893
SaqAI	TTAA	7 cut(s)	264, 588, 617, 675, 915, 942, 985
SatI	GCNGC	1 cut(s)	583
Sau3AI	GATC	1 cut(s)	822
Sau96I	GGNCC	4 cut(s)	239, 479, 533, 686
ScaI	AGTACT	1 cut(s)	75
SchI	GAGTC	1 cut(s)	822
ScrFI	CCNGG	5 cut(s)	155, 272, 477, 870, 884
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	2 cut(s)	706, 767
SfcI	CTRYAG	2 cut(s)	736, 744
SfuI	TTCGAA	1 cut(s)	467
SinI	GGWCC	3 cut(s)	239, 479, 686
SmiMI	CAYNNNNRTG	2 cut(s)	768, 893
Sse9I	AATT	9 cut(s)	120, 325, 375, 384, 433, 652, 826, 859, 916
SsiI	CCGC	1 cut(s)	774
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	1 cut(s)	980
StyD4I	CCNGG	5 cut(s)	153, 270, 475, 868, 882
StyI	CCWWGG	1 cut(s)	769
TaaI	ACNGT	4 cut(s)	131, 303, 748, 892
TaiI	ACGT	4 cut(s)	169, 297, 525, 838
TaqI	TCGA	5 cut(s)	27, 70, 312, 467, 798
TasI	AATT	9 cut(s)	120, 325, 375, 384, 433, 652, 826, 859, 916
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	7 cut(s)	264, 588, 617, 675, 915, 942, 985
Tru9I	TTAA	7 cut(s)	264, 588, 617, 675, 915, 942, 985
TscAI	CASTG	2 cut(s)	136, 235
TseFI	GTSAC	2 cut(s)	147, 445
TseI	GCWGC	1 cut(s)	582
Tsp45I	GTSAC	2 cut(s)	147, 445
TspDTI	ATGAA	2 cut(s)	354, 819
TspGWI	ACGGA	1 cut(s)	680
TspRI	CASTG	2 cut(s)	136, 235
Van91I	CCANNNNNTGG	1 cut(s)	759
VpaK11BI	GGWCC	3 cut(s)	239, 479, 686
XapI	RAATTY	1 cut(s)	652
XspI	CTAG	1 cut(s)	980
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.