Rh1CG385700

GMC oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005929
Physical Location & Seq
Reverse (-)
65614704 .. 65615116
413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG385700.1

Sequence Viewer

Length: 330 bp
ATGCCAATCGAAGCTCTCATTAACCTAATGCTGACTTTGCCGATAAACAATAGGCGAGGACATGCAAATGCTTCATTTTCCTTGGAACAATTTTGCATAGACACAGTGATGACCATATGGCATTATCATGGAGGTTGTCAAGTTGGTAGGGTTGTGGACAAAGAATACAGGGTGCTTGGTATTGATTCACTTAGGGTTGTTGATATGTCGATCTTTCATTCGACTCCAGGAACTAATCCCCAAGCTACTGTCATGATGCTTGGCAGGTATGTGGGAGAAAAGATTGTTCATGAGAGATACCTATCCCGAAGATCAGAACAGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

109

Amino Acids

12.46

Weight (kDa)

8.71

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_C PF05199 23 - 88 3.7e-17 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 2 cut(s) 14, 245
AluI AGCT 2 cut(s) 14, 245
BciT130I CCWGG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 301
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 301
Bsp143I GATC 2 cut(s) 210, 311
BspHI TCATGA 2 cut(s) 252, 289
BspMI ACCTGC 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 210, 311
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 106, 250
BstDEI CTNAG 1 cut(s) 191
BstKTI GATC 2 cut(s) 213, 314
BstMBI GATC 2 cut(s) 210, 311
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 111
BveI ACCTGC 1 cut(s) 255
CciI TCATGA 2 cut(s) 252, 289
CviAII CATG 4 cut(s) 62, 128, 253, 290
CviJI RGCY 2 cut(s) 14, 245
CviKI_1 RGCY 2 cut(s) 14, 245
DdeI CTNAG 1 cut(s) 191
DpnI GATC 2 cut(s) 212, 313
DpnII GATC 2 cut(s) 210, 311
Eco130I CCWWGG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 4 cut(s) 65, 131, 256, 293
FaiI YATR 9 cut(s) 63, 98, 116, 118, 129, 206, 254, 270, 291
FatI CATG 4 cut(s) 61, 127, 252, 289
FauNDI CATATG 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 210
Hin1II CATG 4 cut(s) 65, 131, 256, 293
HinfI GANTC 2 cut(s) 185, 223
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 3 cut(s) 253, 290, 306
Hpy8I GTNNAC 1 cut(s) 157
HpyCH4III ACNGT 2 cut(s) 106, 250
HpyCH4V TGCA 2 cut(s) 65, 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 4 cut(s) 65, 131, 256, 293
Kzo9I GATC 2 cut(s) 210, 311
LpnPI CCDG 4 cut(s) 154, 213, 240, 250
LweI GCATC 1 cut(s) 246
MalI GATC 2 cut(s) 212, 313
MboI GATC 2 cut(s) 210, 311
MboII GAAGA 1 cut(s) 321
MluCI AATT 2 cut(s) 89, 325
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 2 cut(s) 50, 125
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 3 cut(s) 66, 107, 126
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeI CATATG 1 cut(s) 116
NdeII GATC 2 cut(s) 210, 311
NlaIII CATG 4 cut(s) 65, 131, 256, 293
NspI RCATGY 1 cut(s) 65
PagI TCATGA 2 cut(s) 252, 289
PfeI GAWTC 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 226
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
RseI CAYNNNNRTG 3 cut(s) 66, 107, 126
SaqAI TTAA 1 cut(s) 21
Sau3AI GATC 2 cut(s) 210, 311
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 228
SetI ASST 6 cut(s) 16, 27, 136, 247, 269, 303
SfaNI GCATC 1 cut(s) 246
SmiMI CAYNNNNRTG 3 cut(s) 66, 107, 126
Sse9I AATT 2 cut(s) 89, 325
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 106, 250
TaqI TCGA 3 cut(s) 9, 209, 221
TasI AATT 2 cut(s) 89, 325
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 63, 206, 278
TspRI CASTG 1 cut(s) 111
XceI RCATGY 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.