RchiOBHm_Chr1g0376511

GMC oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005929
Physical Location & Seq
Reverse (-)
63754118 .. 63755078
961 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60013

Sequence Viewer

Length: 390 bp
ATGGTGACCATTATCAGTGTGGTCAATTCCAAATCCTTTTCGAAATTCCGTTATAAAAGCATGCCAATCGAAGCTCTCATTAACCTAATGCTGACTTTGCCGATAAACAATAGGCGAAGGCATGCAAATGCTTCATTTTCCTTGGAACAATTTTGCATAGACACAGTGATGACCATATGGCATTATCATGGAGGTTGTCAAGTTGGTAGGGTTGTGGACAAAGAATACAGGGTGCTTGGTGTTGATTCACTTAGGGTTGTTGATGGATCGACATTTCATTCGACTCCAGGAACTAATCCCCAAGCTACTGTCATGATGCTTGGCAGGTATGTGGGAGAAAGGATTGTTCATGAGAGATACCTATCCCGAAGATCAGAACAGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

129

Amino Acids

14.79

Weight (kDa)

9.85

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_C PF05199 40 - 108 3e-17 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
Acc36I ACCTGC 1 cut(s) 315
AclWI GGATC 1 cut(s) 274
AcsI RAATTY 1 cut(s) 44
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 2 cut(s) 74, 305
AluI AGCT 2 cut(s) 74, 305
AlwI GGATC 1 cut(s) 274
ApoI RAATTY 1 cut(s) 44
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 41
BccI CCATC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 1 cut(s) 288
BfuAI ACCTGC 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 361
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 141
BseJI GATNNNNATC 1 cut(s) 361
Bsp119I TTCGAA 1 cut(s) 41
Bsp143I GATC 2 cut(s) 266, 371
BspHI TCATGA 2 cut(s) 312, 349
BspMI ACCTGC 1 cut(s) 315
BspPI GGATC 1 cut(s) 274
BspT104I TTCGAA 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 266, 371
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 166, 310
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 62, 123
BstDEI CTNAG 1 cut(s) 251
BstEII GGTNACC 1 cut(s) 4
BstKTI GATC 2 cut(s) 269, 374
BstMBI GATC 2 cut(s) 266, 371
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 2 cut(s) 64, 125
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 22, 171
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 2 cut(s) 62, 123
CciI TCATGA 2 cut(s) 312, 349
CviAII CATG 5 cut(s) 61, 122, 188, 313, 350
CviJI RGCY 2 cut(s) 74, 305
CviKI_1 RGCY 2 cut(s) 74, 305
DdeI CTNAG 1 cut(s) 251
DpnI GATC 2 cut(s) 268, 373
DpnII GATC 2 cut(s) 266, 371
Eco130I CCWWGG 1 cut(s) 141
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 5 cut(s) 64, 125, 191, 316, 353
FatI CATG 5 cut(s) 60, 121, 187, 312, 349
FauNDI CATATG 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 270
Hin1II CATG 5 cut(s) 64, 125, 191, 316, 353
HinfI GANTC 2 cut(s) 245, 283
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 3 cut(s) 313, 350, 366
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 2 cut(s) 166, 310
HpyCH4V TGCA 2 cut(s) 125, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 251
Hsp92II CATG 5 cut(s) 64, 125, 191, 316, 353
Kzo9I GATC 2 cut(s) 266, 371
LpnPI CCDG 4 cut(s) 214, 273, 300, 310
LweI GCATC 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 4
MalI GATC 2 cut(s) 268, 373
MboI GATC 2 cut(s) 266, 371
MboII GAAGA 1 cut(s) 381
MluCI AATT 4 cut(s) 25, 44, 149, 385
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 1 cut(s) 185
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 3 cut(s) 126, 167, 186
MspR9I CCNGG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeI CATATG 1 cut(s) 176
NdeII GATC 2 cut(s) 266, 371
NlaIII CATG 5 cut(s) 64, 125, 191, 316, 353
NmuCI GTSAC 1 cut(s) 4
NspI RCATGY 2 cut(s) 64, 125
NspV TTCGAA 1 cut(s) 41
PaeI GCATGC 2 cut(s) 64, 125
PagI TCATGA 2 cut(s) 312, 349
PfeI GAWTC 1 cut(s) 245
PfoI TCCNGGA 1 cut(s) 286
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PsiI TTATAA 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 286
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 286
RseI CAYNNNNRTG 3 cut(s) 126, 167, 186
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 2 cut(s) 266, 371
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 288
SetI ASST 6 cut(s) 76, 87, 196, 307, 329, 363
SfaNI GCATC 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 41
SmiMI CAYNNNNRTG 3 cut(s) 126, 167, 186
SphI GCATGC 2 cut(s) 64, 125
Sse9I AATT 4 cut(s) 25, 44, 149, 385
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 166, 310
TaqI TCGA 4 cut(s) 41, 69, 269, 281
TasI AATT 4 cut(s) 25, 44, 149, 385
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 2 cut(s) 22, 171
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 3 cut(s) 123, 266, 338
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 2 cut(s) 22, 171
XapI RAATTY 1 cut(s) 44
XceI RCATGY 2 cut(s) 64, 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.