Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005929

Physical Location & Seq

Genomic Coordinates Forward (+)

8087648 .. 8088192

Gene Structure 545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016596

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAGAAGATTCTCGGGCCAGTCTCTGCTGGTTCAACTGATGTCAAGGTCAATCCTATCATTCAATTCAATTACTTCAACAGCCCAGTGGTCAGTGGATGTGATGTTCTCAGGACCAAGTCTATGGATGATTTCAAGTTCCAGGGATGGTTTGGGAATAAGGATTTTTGGTTTATAGGGCCTGCATTGCCGGTTGATCAGTCTGACTTTGACCAGATGGCAGACTTCTGCCGCCGCACTGTAAGCACCATAAGGCATTACCATGGGGGCTGCATAGCCGTGAAGGTGGTTGCTGGTGATTTCCTCGTCATTGGTATAGATGCACTCCGTACTTTTGGTATATCACTGGGGACACCAGGCTACCCTTCTGATGCTTGGAAGATATGTCGGGCAGAAGACAATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

136

Amino Acids

14.95

Weight (kDa)

5.28

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005929)

Species	Orthologous Gene IDs
malus_domestica	MD00G1005200.v1.1 MD03G1091500.v1.1 MD03G1091800.v1.1
prunus_persica	Prupe.1G093400_v2.0.a1 Prupe.3G029300_v2.0.a1
pyrus_communis	pycom10g23320
rosa_chinensis	RchiOBHm_Chr1g0337911 RchiOBHm_Chr1g0376511 RchiOBHm_Chr2g0095811 RchiOBHm_Chr2g0103621
rosa_laevigata	RLG00000016596 RLG00000017345
rosa_multiflora	Rmu_co8084336.1_g000001 Rmu_co8272793.1_g000001 Rmu_sc0001530.1_g000021 Rmu_sc0004388.1_g000008
rosa_roxburghii	Rroxscaffold_2G00146080
rosa_samantha	Rh1AG408100 Rh1BG371800 Rh1BG371900 Rh1CG385700 Rh1DG402900 Rh2AG164500 Rh2BG171600 Rh2CG171100 Rh2DG103400 Rh2DG169900 Rh4CG129100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	232, 235
AfaI	GTAC	1 cut(s)	331
AgsI	TTSAA	5 cut(s)	36, 65, 70, 79, 136
AjnI	CCWGG	2 cut(s)	141, 355
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
Alw26I	GTCTC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	2 cut(s)	17, 179
ApeKI	GCWGC	1 cut(s)	270
AspS9I	GGNCC	3 cut(s)	17, 114, 179
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	2 cut(s)	141, 211
BceAI	ACGGC	1 cut(s)	263
BciT130I	CCWGG	2 cut(s)	143, 357
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	28
BisI	GCNGC	3 cut(s)	232, 235, 271
BlsI	GCNGC	3 cut(s)	233, 236, 272
Bme1390I	CCNGG	2 cut(s)	143, 357
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	3 cut(s)	17, 114, 179
BmrFI	CCNGG	2 cut(s)	143, 357
BmrI	ACTGGG	2 cut(s)	80, 356
BmsI	GCATC	2 cut(s)	310, 361
BmuI	ACTGGG	2 cut(s)	80, 356
BpiI	GAAGAC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	142, 262
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	3 cut(s)	20, 86, 351
Bse3DI	GCAATG	1 cut(s)	185
BseBI	CCWGG	2 cut(s)	143, 357
BseDI	CCNNGG	2 cut(s)	142, 262
BseGI	GGATG	3 cut(s)	104, 133, 152
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	3 cut(s)	20, 86, 351
BseXI	GCAGC	1 cut(s)	257
BshFI	GGCC	2 cut(s)	19, 181
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	19, 181
BsoBI	CYCGRG	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	196
Bsp19I	CCATGG	1 cut(s)	262
BspACI	CCGC	2 cut(s)	232, 235
BspANI	GGCC	2 cut(s)	19, 181
BspCNI	CTCAG	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	20, 86, 351
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	142, 262
BssMI	GATC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	2 cut(s)	143, 357
Bst4CI	ACNGT	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	3 cut(s)	104, 133, 152
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 243
BstNI	CCWGG	2 cut(s)	143, 357
BstSCI	CCNGG	2 cut(s)	141, 355
BstV1I	GCAGC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	402
BstXI	CCANNNNNNTGG	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	19, 181
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	104, 133, 152
BtsIMutI	CAGTG	4 cut(s)	93, 100, 237, 344
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	3 cut(s)	17, 114, 179
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	6 cut(s)	19, 84, 181, 270, 278, 360
CviKI_1	RGCY	6 cut(s)	19, 84, 181, 270, 278, 360
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	141, 355
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	1 cut(s)	266
FaiI	YATR	8 cut(s)	125, 176, 251, 264, 275, 317, 341, 385
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	3 cut(s)	232, 235, 271
FokI	GGATG	3 cut(s)	111, 140, 159
Fsp4HI	GCNGC	3 cut(s)	232, 235, 271
GluI	GCNGC	3 cut(s)	232, 235, 271
HaeIII	GGCC	2 cut(s)	19, 181
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	205, 370
Hpy188III	TCNNGA	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	277, 375
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	185, 273, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 243
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	2 cut(s)	310, 361
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	3 cut(s)	19, 391, 407
MluCI	AATT	2 cut(s)	65, 70
MnlI	CCTC	1 cut(s)	314
MslI	CAYNNNNRTG	2 cut(s)	261, 278
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	143, 357
MvaI	CCWGG	2 cut(s)	143, 357
MwoI	GCNNNNNNNGC	2 cut(s)	187, 243
NcoI	CCATGG	1 cut(s)	262
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	10
PflFI	GACNNNGTC	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	233, 236, 272
Psp6I	CCWGG	2 cut(s)	141, 355
PspGI	CCWGG	2 cut(s)	141, 355
PspPI	GGNCC	3 cut(s)	17, 114, 179
PstNI	CAGNNNCTG	1 cut(s)	26
PsyI	GACNNNGTC	1 cut(s)	118
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	2 cut(s)	261, 278
SatI	GCNGC	3 cut(s)	232, 235, 271
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	3 cut(s)	17, 114, 179
ScrFI	CCNGG	2 cut(s)	143, 357
SetI	ASST	2 cut(s)	51, 288
SfaNI	GCATC	2 cut(s)	310, 361
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	261, 278
Sse9I	AATT	2 cut(s)	65, 70
SsiI	CCGC	2 cut(s)	232, 235
StyD4I	CCNGG	2 cut(s)	141, 355
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	241
TasI	AATT	2 cut(s)	65, 70
TauI	GCSGC	2 cut(s)	234, 237
TfiI	GAWTC	1 cut(s)	10
TscAI	CASTG	4 cut(s)	93, 100, 244, 351
TseI	GCWGC	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	4 cut(s)	93, 100, 244, 351
Tth111I	GACNNNGTC	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.