Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005929

Physical Location & Seq

Genomic Coordinates Reverse (-)

29896863 .. 29897111

Gene Structure 249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56578

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCCTACTCAAGACGAGCTCCGGAAACTCTGCAAGACGACTGTCAGAACCTTCTACCACTACCATGGTGGTTGCACTATGGGGTCAGTGGTCGACAAGAATTATAGGGTTTATGGTGTTAAAGGCTTGAGAGTGATTGATGGATCAACCTTCCTGGAATCACCAGGCACAAACCAATGGCCATCTGCTAATGCTTGGAAGATACAAGGGCTCAAAATTCTTAAAGATAGAATAAAGCTGCTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007267 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009987 GO:0010430 GO:0016829 GO:0016830 GO:0016832 GO:0019395 GO:0019752 GO:0023052 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0046593 GO:0048037 GO:0048229 GO:0048856 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 map00260 map01100

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

82

Amino Acids

9.33

Weight (kDa)

9.74

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMC_oxred_C	PF05199	4 - 59	1.1e-16	GMC oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005929)

Species	Orthologous Gene IDs
malus_domestica	MD00G1005200.v1.1 MD03G1091500.v1.1 MD03G1091800.v1.1
prunus_persica	Prupe.1G093400_v2.0.a1 Prupe.3G029300_v2.0.a1
pyrus_communis	pycom10g23320
rosa_chinensis	RchiOBHm_Chr1g0337911 RchiOBHm_Chr1g0376511 RchiOBHm_Chr2g0095811 RchiOBHm_Chr2g0103621
rosa_laevigata	RLG00000016596 RLG00000017345
rosa_multiflora	Rmu_co8084336.1_g000001 Rmu_co8272793.1_g000001 Rmu_sc0001530.1_g000021 Rmu_sc0004388.1_g000008
rosa_roxburghii	Rroxscaffold_2G00146080
rosa_samantha	Rh1AG408100 Rh1BG371800 Rh1BG371900 Rh1CG385700 Rh1DG402900 Rh2AG164500 Rh2BG171600 Rh2CG171100 Rh2DG103400 Rh2DG169900 Rh4CG129100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AccIII	TCCGGA	1 cut(s)	21
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	216
AjnI	CCWGG	2 cut(s)	153, 163
AluBI	AGCT	2 cut(s)	19, 238
AluI	AGCT	2 cut(s)	19, 238
Alw21I	GWGCWC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	151
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	153
BalI	TGGCCA	1 cut(s)	181
BanII	GRGCYC	2 cut(s)	21, 213
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	134, 190
BciT130I	CCWGG	2 cut(s)	155, 165
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	155, 165
BmrFI	CCNGG	2 cut(s)	155, 165
BoxI	GACNNNNGTC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	21
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	155, 165
BseDI	CCNNGG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	22
BsnI	GGCC	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	21, 213
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	143
Bsp19I	CCATGG	1 cut(s)	64
BspANI	GGCC	1 cut(s)	181
BspEI	TCCGGA	1 cut(s)	21
BspPI	GGATC	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	64
Bst2UI	CCWGG	2 cut(s)	155, 165
Bst4CI	ACNGT	1 cut(s)	43
BstDSI	CCRYGG	1 cut(s)	64
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	155, 165
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	153, 163
BstV1I	GCAGC	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	93
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	5 cut(s)	19, 126, 181, 211, 238
CviKI_1	RGCY	5 cut(s)	19, 126, 181, 211, 238
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	64
Eco24I	GRGCYC	2 cut(s)	21, 213
Eco53kI	GAGCTC	1 cut(s)	19
EcoICRI	GAGCTC	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	153, 163
EcoT14I	CCWWGG	1 cut(s)	64
EcoT38I	GRGCYC	2 cut(s)	21, 213
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	1 cut(s)	68
FaiI	YATR	4 cut(s)	66, 80, 105, 114
FatI	CATG	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	239
FriOI	GRGCYC	2 cut(s)	21, 213
Fsp4HI	GCNGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	2 cut(s)	11, 22
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	61, 160
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	33, 75
Hsp92II	CATG	1 cut(s)	68
Kpn2I	TCCGGA	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	5 cut(s)	35, 140, 150, 167, 177
Lsp1109I	GCAGC	1 cut(s)	225
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	21, 213
MlsI	TGGCCA	1 cut(s)	181
MluCI	AATT	2 cut(s)	100, 216
MluNI	TGGCCA	1 cut(s)	181
Mox20I	TGGCCA	1 cut(s)	181
MroI	TCCGGA	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	181
MseI	TTAA	3 cut(s)	120, 222, 247
MslI	CAYNNNNRTG	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	181
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	155, 165
MvaI	CCWGG	2 cut(s)	155, 165
NcoI	CCATGG	1 cut(s)	64
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	240
PshAI	GACNNNNGTC	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	153, 163
PspGI	CCWGG	2 cut(s)	153, 163
RseI	CAYNNNNRTG	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	120, 222, 247
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	155, 165
SduI	GDGCHC	2 cut(s)	21, 213
SetI	ASST	4 cut(s)	21, 53, 152, 240
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	9, 127
SmoI	CTYRAG	2 cut(s)	9, 127
Sse9I	AATT	2 cut(s)	100, 216
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	153, 163
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	93
TasI	AATT	2 cut(s)	100, 216
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	3 cut(s)	120, 222, 247
Tru9I	TTAA	3 cut(s)	120, 222, 247
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	1 cut(s)	238
TspRI	CASTG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.