RchiOBHm_Chr2g0103621

(R)-mandelonitrile lyase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005929
Physical Location & Seq
Reverse (-)
15075391 .. 15076329
939 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47798

Sequence Viewer

Length: 321 bp
ATGGATGATTTCAAGTTCCAGGGGTGGTTTGGGAATAAGGATTTTAGGTTTATAGGGCCTGAATTGCCAGTTGATCAGTCTGACTTTGACCAGATGGCAGATTTCTGCCGCCGCACTGTAAGCACCATATGGCATTACCATGGGGGCTGCATTGCCGGGAAGGTGGTTGATGGTGATTTCCGCGTCATTGTACCACTCCGTACTTTTGGTATATCACCCAGGGACAAATCCTCTGGCTACCCCACCCTTCTGATACTTGGAAGATATGTTGGGCAGAAGATAATGAATAACAGAAAGGGAGGATATAAAATGGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko01110 map00460 map01110
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

106

Amino Acids

12.13

Weight (kDa)

9.0

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 183
AciI CCGC 3 cut(s) 109, 112, 181
AfaI GTAC 2 cut(s) 192, 202
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 2 cut(s) 18, 218
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 185, 207
BbvI GCAGC 1 cut(s) 134
BccI CCATC 2 cut(s) 88, 164
BciT130I CCWGG 2 cut(s) 20, 220
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 157
BisI GCNGC 3 cut(s) 109, 112, 148
BlsI GCNGC 3 cut(s) 110, 113, 149
Bme1390I CCNGG 3 cut(s) 20, 157, 220
BmgT120I GGNCC 1 cut(s) 56
BmrFI CCNGG 3 cut(s) 20, 157, 220
BpuMI CCSGG 1 cut(s) 157
BsaJI CCNNGG 4 cut(s) 19, 139, 218, 219
Bse1I ACTGG 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 2 cut(s) 20, 220
BseDI CCNNGG 4 cut(s) 19, 139, 218, 219
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 3 cut(s) 109, 112, 181
BspANI GGCC 1 cut(s) 58
BspFNI CGCG 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 4 cut(s) 19, 139, 218, 219
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 20, 220
Bst4CI ACNGT 1 cut(s) 118
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 183
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 64, 120
BstNI CCWGG 2 cut(s) 20, 220
BstSCI CCNGG 3 cut(s) 18, 155, 218
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 58
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 56
CseI GACGC 1 cut(s) 172
Csp6I GTAC 2 cut(s) 191, 201
CviAII CATG 1 cut(s) 140
CviJI RGCY 3 cut(s) 58, 147, 237
CviKI_1 RGCY 3 cut(s) 58, 147, 237
CviQI GTAC 2 cut(s) 191, 201
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 18, 218
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 143
FaiI YATR 7 cut(s) 53, 128, 130, 141, 212, 267, 306
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 139
FauNDI CATATG 1 cut(s) 128
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 109, 112, 148
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 109, 112, 148
GluI GCNGC 3 cut(s) 109, 112, 148
HaeIII GGCC 1 cut(s) 58
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 172
Hin1II CATG 1 cut(s) 143
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HpaII CCGG 1 cut(s) 156
HphI GGTGA 2 cut(s) 185, 207
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 82, 252
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 2 cut(s) 154, 257
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 120
Hsp92II CATG 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 9 cut(s) 5, 32, 72, 81, 104, 169, 205, 219, 232
Lsp1109I GCAGC 1 cut(s) 134
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 273, 289
MluCI AATT 1 cut(s) 62
MnlI CCTC 2 cut(s) 241, 293
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 3 cut(s) 20, 157, 220
MvaI CCWGG 2 cut(s) 20, 220
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 64, 120
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 139
NdeI CATATG 1 cut(s) 128
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 143
PasI CCCWGGG 1 cut(s) 219
PkrI GCNGC 3 cut(s) 110, 113, 149
Psp6I CCWGG 2 cut(s) 18, 218
PspGI CCWGG 2 cut(s) 18, 218
PspPI GGNCC 1 cut(s) 56
RsaI GTAC 2 cut(s) 192, 202
RsaNI GTAC 2 cut(s) 191, 201
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 3 cut(s) 109, 112, 148
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 56
ScrFI CCNGG 3 cut(s) 20, 157, 220
SetI ASST 2 cut(s) 50, 165
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 1 cut(s) 62
SsiI CCGC 3 cut(s) 109, 112, 181
StyD4I CCNGG 3 cut(s) 18, 155, 218
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 118
TasI AATT 1 cut(s) 62
TauI GCSGC 2 cut(s) 111, 114
TscAI CASTG 1 cut(s) 121
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 299
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.