Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005929

Physical Location & Seq

Genomic Coordinates Reverse (-)

15509516 .. 15511207

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG164500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCCGTCGTCGCTTCTTCGAGGCCGTCGTCTCGGAACCCACGCCGGCGTCGTCAAGAGCCAAGTTACCTTAAGTTTGTTTCCAACGCCACTGACTTCCCATCGGGGGAGTACTATAAGGACTACATTATCAGCGGAGGTGGCACTGCTGGGTGCCCTTTGGCTGCGACACTATCATCCAGGTTTCGGGTCCTCCTGCTCAAAAGTGCCAGTGGTCAGTGGATGTGATGTTCTCAGGACCAAGTCTATGGATGATTTCAAGCTCCAGGGGTGGTTTGGGAATAAGGATTTTAGGTTTATAGGGCCTGCATTGCCAGTTGATCAGTCTGACTTTGACCAGATGGCAGATTTCTGCCGCCGCACTGCAAGCACCATATGGCATTACCATGGGGGCTGCATTGCCGGGAAGGTGGTTGATGGTGATTTCCGCGTCATTGTACCACTCCGTACTTTTGGTATATCACCCAGGGACAAATCCTCTGGCTACCCTTCTGATACTTGGAAGATATGTTGGGCAGAAGATAATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

176

Amino Acids

19.46

Weight (kDa)

9.1

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005929)

Species	Orthologous Gene IDs
malus_domestica	MD00G1005200.v1.1 MD03G1091500.v1.1 MD03G1091800.v1.1
prunus_persica	Prupe.1G093400_v2.0.a1 Prupe.3G029300_v2.0.a1
pyrus_communis	pycom10g23320
rosa_chinensis	RchiOBHm_Chr1g0337911 RchiOBHm_Chr1g0376511 RchiOBHm_Chr2g0095811 RchiOBHm_Chr2g0103621
rosa_laevigata	RLG00000016596 RLG00000017345
rosa_multiflora	Rmu_co8084336.1_g000001 Rmu_co8272793.1_g000001 Rmu_sc0001530.1_g000021 Rmu_sc0004388.1_g000008
rosa_roxburghii	Rroxscaffold_2G00146080
rosa_samantha	Rh1AG408100 Rh1BG371800 Rh1BG371900 Rh1CG385700 Rh1DG402900 Rh2AG164500 Rh2BG171600 Rh2CG171100 Rh2DG103400 Rh2DG169900 Rh4CG129100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccII	CGCG	1 cut(s)	429
AciI	CCGC	4 cut(s)	134, 355, 358, 427
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	3 cut(s)	112, 438, 448
AfiI	CCNNNNNNNGG	2 cut(s)	105, 185
AflII	CTTAAG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	3 cut(s)	178, 264, 464
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	35
AoxI	GGCC	2 cut(s)	22, 302
ApeKI	GCWGC	2 cut(s)	163, 393
AspS9I	GGNCC	3 cut(s)	189, 237, 302
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	431, 453
AvaII	GGWCC	2 cut(s)	189, 237
BaeGI	GKGCMC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	150, 380
BccI	CCATC	3 cut(s)	108, 334, 410
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	3 cut(s)	180, 266, 466
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	70
BisI	GCNGC	4 cut(s)	164, 355, 358, 394
BlsI	GCNGC	4 cut(s)	165, 356, 359, 395
BmcAI	AGTACT	1 cut(s)	112
Bme1390I	CCNGG	4 cut(s)	180, 266, 403, 466
Bme18I	GGWCC	2 cut(s)	189, 237
BmgT120I	GGNCC	3 cut(s)	189, 237, 302
BmiI	GGNNCC	3 cut(s)	37, 154, 190
BmrFI	CCNGG	4 cut(s)	180, 266, 403, 466
BpmI	CTGGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	403
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	265, 385, 464, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 185
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	209, 314
Bse3DI	GCAATG	2 cut(s)	308, 396
BseBI	CCWGG	3 cut(s)	180, 266, 466
BseDI	CCNNGG	4 cut(s)	265, 385, 464, 465
BseGI	GGATG	3 cut(s)	175, 227, 256
BseLI	CCNNNNNNNGG	2 cut(s)	105, 185
BseMI	GCAATG	2 cut(s)	308, 396
BseMII	CTCAG	1 cut(s)	247
BseNI	ACTGG	2 cut(s)	209, 314
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	150, 380
BseYI	CCCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	2 cut(s)	24, 304
BshNI	GGYRCC	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	45, 402
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	105, 185
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	2 cut(s)	24, 304
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	319
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	4 cut(s)	134, 355, 358, 427
BspANI	GGCC	2 cut(s)	24, 304
BspCNI	CTCAG	1 cut(s)	246
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	3 cut(s)	37, 154, 190
BspT107I	GGYRCC	1 cut(s)	152
BspTI	CTTAAG	1 cut(s)	70
BsrDI	GCAATG	2 cut(s)	308, 396
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	209, 314
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	4 cut(s)	265, 385, 464, 465
BssMI	GATC	1 cut(s)	319
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	385
Bst2UI	CCWGG	3 cut(s)	180, 266, 466
BstACI	GRCGYC	1 cut(s)	48
BstAFI	CTTAAG	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	46, 306, 367
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	3 cut(s)	175, 227, 256
BstFNI	CGCG	1 cut(s)	429
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 140, 310, 366
BstNI	CCWGG	3 cut(s)	180, 266, 466
BstSCI	CCNGG	4 cut(s)	178, 264, 401, 464
BstSLI	GKGCMC	1 cut(s)	157
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	150, 380
BstXI	CCANNNNNNTGG	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	24, 304
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	3 cut(s)	175, 227, 256
BtsI	GCAGTG	2 cut(s)	143, 360
BtsIMutI	CAGTG	5 cut(s)	89, 143, 216, 223, 360
Cac8I	GCNNGC	3 cut(s)	46, 306, 367
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	3 cut(s)	189, 237, 302
CseI	GACGC	2 cut(s)	37, 418
Csp6I	GTAC	3 cut(s)	111, 437, 447
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	7 cut(s)	24, 60, 163, 262, 304, 393, 483
CviKI_1	RGCY	7 cut(s)	24, 60, 163, 262, 304, 393, 483
CviQI	GTAC	3 cut(s)	111, 437, 447
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	385
Eco47I	GGWCC	2 cut(s)	189, 237
EcoO109I	RGGNCCY	2 cut(s)	189, 302
EcoRII	CCWGG	3 cut(s)	178, 264, 464
EcoT14I	CCWWGG	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	385
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	1 cut(s)	389
FaiI	YATR	8 cut(s)	116, 248, 299, 374, 376, 387, 458, 508
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	1 cut(s)	385
FauNDI	CATATG	1 cut(s)	374
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	4 cut(s)	164, 355, 358, 394
FokI	GGATG	3 cut(s)	162, 234, 263
Fsp4HI	GCNGC	4 cut(s)	164, 355, 358, 394
GluI	GCNGC	4 cut(s)	164, 355, 358, 394
GsaI	CCCAGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	24, 304
HapII	CCGG	2 cut(s)	45, 402
HgaI	GACGC	2 cut(s)	37, 418
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	389
HpaII	CCGG	2 cut(s)	45, 402
HphI	GGTGA	2 cut(s)	431, 453
Hpy188I	TCNGA	3 cut(s)	35, 328, 493
Hpy188III	TCNNGA	2 cut(s)	55, 235
Hpy99I	CGWCG	4 cut(s)	10, 13, 30, 53
HpyAV	CCTTC	2 cut(s)	400, 498
HpyCH4V	TGCA	3 cut(s)	308, 365, 396
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 140, 310, 366
HpyF3I	CTNAG	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	389
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	267
Lsp1109I	GCAGC	2 cut(s)	150, 380
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	3 cut(s)	8, 514, 530
MhlI	GDGCHC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	4 cut(s)	14, 130, 202, 487
MreI	CGCCGGCG	1 cut(s)	44
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	134
MspCI	CTTAAG	1 cut(s)	70
MspI	CCGG	2 cut(s)	45, 402
MspR9I	CCNGG	4 cut(s)	180, 266, 403, 466
MvaI	CCWGG	3 cut(s)	180, 266, 466
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	10, 140, 310, 366
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	385
NdeI	CATATG	1 cut(s)	374
NdeII	GATC	1 cut(s)	319
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	3 cut(s)	37, 154, 190
PasI	CCCWGGG	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	2 cut(s)	25, 48
PdiI	GCCGGC	1 cut(s)	46
PflFI	GACNNNGTC	1 cut(s)	241
PkrI	GCNGC	4 cut(s)	165, 356, 359, 395
PpuMI	RGGWCCY	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	189
Psp6I	CCWGG	3 cut(s)	178, 264, 464
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	3 cut(s)	178, 264, 464
PspN4I	GGNNCC	3 cut(s)	37, 154, 190
PspPI	GGNCC	3 cut(s)	189, 237, 302
PspPPI	RGGWCCY	1 cut(s)	189
PsyI	GACNNNGTC	1 cut(s)	241
RsaI	GTAC	3 cut(s)	112, 438, 448
RsaNI	GTAC	3 cut(s)	111, 437, 447
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	4 cut(s)	164, 355, 358, 394
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	3 cut(s)	189, 237, 302
ScaI	AGTACT	1 cut(s)	112
ScrFI	CCNGG	4 cut(s)	180, 266, 403, 466
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	6 cut(s)	71, 141, 184, 264, 296, 411
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	2 cut(s)	189, 237
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SsiI	CCGC	4 cut(s)	134, 355, 358, 427
StyD4I	CCNGG	4 cut(s)	178, 264, 401, 464
StyI	CCWWGG	1 cut(s)	385
TaqI	TCGA	1 cut(s)	19
TatI	WGTACW	1 cut(s)	110
TauI	GCSGC	2 cut(s)	357, 360
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	5 cut(s)	96, 150, 216, 223, 367
TseI	GCWGC	2 cut(s)	163, 393
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	5 cut(s)	96, 150, 216, 223, 367
Tth111I	GACNNNGTC	1 cut(s)	241
Vha464I	CTTAAG	1 cut(s)	70
VpaK11BI	GGWCC	2 cut(s)	189, 237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272
ZrmI	AGTACT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.