Rh2DG103400

(R)-mandelonitrile lyase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
8417446 .. 8417703
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG103400.1

Sequence Viewer

Length: 258 bp
ATGGAGAAGATTCTCGGGCCAGTCTCTGCTGGTTCTTTGAGGCTGGCTTCAACTGATGTCAAGGTGAATCCTATCATTCAATTCAATTACTTCAACAGCCCAGTGGTCAGTGGATGTGATGTTCGCAGGACCAAGTCTATGGATGATTTCAAGTTCCAGGGATGGTTTGGGAATAAGGATTTTAGGTTTATAGGGCCTGCATTGCCAGTTGATCAGTCTGACTTTGACCAGATGCAGACTTCTGCCGCCGCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.42

Weight (kDa)

6.06

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 246, 249
AgsI TTSAA 5 cut(s) 51, 80, 85, 94, 151
AjnI CCWGG 1 cut(s) 156
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
Alw26I GTCTC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 17, 194
AspS9I GGNCC 3 cut(s) 17, 129, 194
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 129
BccI CCATC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 28
BisI GCNGC 2 cut(s) 246, 249
BlsI GCNGC 2 cut(s) 247, 250
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 3 cut(s) 17, 129, 194
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 157
Bse1I ACTGG 3 cut(s) 20, 101, 206
Bse3DI GCAATG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 3 cut(s) 119, 148, 167
BseMI GCAATG 1 cut(s) 200
BseNI ACTGG 3 cut(s) 20, 101, 206
BshFI GGCC 2 cut(s) 19, 196
BsiHKCI CYCGRG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 28
BsnI GGCC 2 cut(s) 19, 196
BsoBI CYCGRG 1 cut(s) 14
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 2 cut(s) 246, 249
BspANI GGCC 2 cut(s) 19, 196
BsrDI GCAATG 1 cut(s) 200
BsrI ACTGG 3 cut(s) 20, 101, 206
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 255
BstC8I GCNNGC 2 cut(s) 45, 198
BstF5I GGATG 3 cut(s) 119, 148, 167
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstXI CCANNNNNNTGG 1 cut(s) 139
BsuRI GGCC 2 cut(s) 19, 196
BtsCI GGATG 3 cut(s) 119, 148, 167
BtsIMutI CAGTG 3 cut(s) 108, 115, 251
Cac8I GCNNGC 2 cut(s) 45, 198
CaiI CAGNNNCTG 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 17, 129, 194
CviJI RGCY 5 cut(s) 19, 43, 47, 99, 196
CviKI_1 RGCY 5 cut(s) 19, 43, 47, 99, 196
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 156
FaiI YATR 2 cut(s) 140, 191
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 246, 249
FokI GGATG 3 cut(s) 126, 155, 174
Fsp4HI GCNGC 2 cut(s) 246, 249
GluI GCNGC 2 cut(s) 246, 249
HaeIII GGCC 2 cut(s) 19, 196
HinfI GANTC 2 cut(s) 10, 67
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 200, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 211
LweI GCATC 1 cut(s) 222
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 19
MluCI AATT 2 cut(s) 80, 85
MnlI CCTC 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 1 cut(s) 211
PfeI GAWTC 2 cut(s) 10, 67
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 247, 250
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspPI GGNCC 3 cut(s) 17, 129, 194
PstNI CAGNNNCTG 1 cut(s) 26
PsyI GACNNNGTC 1 cut(s) 133
SatI GCNGC 2 cut(s) 246, 249
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 3 cut(s) 17, 129, 194
ScrFI CCNGG 1 cut(s) 158
SetI ASST 2 cut(s) 66, 188
SfaNI GCATC 1 cut(s) 222
SinI GGWCC 1 cut(s) 129
Sse9I AATT 2 cut(s) 80, 85
SsiI CCGC 2 cut(s) 246, 249
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 255
TasI AATT 2 cut(s) 80, 85
TauI GCSGC 2 cut(s) 248, 251
TfiI GAWTC 2 cut(s) 10, 67
TscAI CASTG 3 cut(s) 108, 115, 258
TspRI CASTG 3 cut(s) 108, 115, 258
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 129
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.