Rh2CG171100

(R)-mandelonitrile lyase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005929
Physical Location & Seq
Reverse (-)
15318923 .. 15320646
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG171100.1

Sequence Viewer

Length: 459 bp
ATGCCGTCGTCGCTTCTTCGAGGCCGTCGTCTCGGAACCCACGCCGGCGTCGTCAAGAGCCAAGTTACCTTAAGTTTGTTTCCAACGCCACTGGGGGGACCAGTGGTCAGTGGATGTGATGTTCTCAGGACCAAGTCTATGGATGATTTCAAGTTCCAGGGGTGGTTTGGGAATAAGGATTTTAGGTTTATAGGGCCTGAATTGCCAGTTGATCAGTCTGACTTTGACCAGATGGCAGATTTCTGCCGCCGCACTGTAAGCACCATATGGCATTACCATGGGGGCTGCATTGCCGGGAAGGTGGTTGATGGTGATTTCCGCGTCATTGTACCACTCCGTACTTTTGGTATATCACCCAGGGACAAATCCTCTGGCTACCCCACCCTTCTGATACTTGGAAGATATGTTGGGCAGAAGATAATGAATAACAGAAAGGGAGGATATAAAATGGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko01110 map00460 map01110
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

152

Amino Acids

16.89

Weight (kDa)

9.71

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 321
AciI CCGC 3 cut(s) 247, 250, 319
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 330, 340
AfiI CCNNNNNNNGG 1 cut(s) 95
AflII CTTAAG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 151
AhdI GACNNNNNGTC 1 cut(s) 104
AjnI CCWGG 2 cut(s) 156, 356
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
Alw26I GTCTC 1 cut(s) 35
AoxI GGCC 2 cut(s) 22, 194
ApeKI GCWGC 1 cut(s) 285
AspS9I GGNCC 3 cut(s) 98, 129, 194
AsuC2I CCSGG 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 323, 345
AvaII GGWCC 2 cut(s) 98, 129
BbvI GCAGC 1 cut(s) 272
BccI CCATC 2 cut(s) 226, 302
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 2 cut(s) 158, 358
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 35
BfrI CTTAAG 1 cut(s) 70
BisI GCNGC 3 cut(s) 247, 250, 286
BlsI GCNGC 3 cut(s) 248, 251, 287
Bme1390I CCNGG 3 cut(s) 158, 295, 358
Bme18I GGWCC 2 cut(s) 98, 129
BmeRI GACNNNNNGTC 1 cut(s) 104
BmgT120I GGNCC 3 cut(s) 98, 129, 194
BmiI GGNNCC 2 cut(s) 37, 99
BmrFI CCNGG 3 cut(s) 158, 295, 358
BmrI ACTGGG 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 295
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 4 cut(s) 157, 277, 356, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 3 cut(s) 96, 101, 206
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 2 cut(s) 158, 358
BseDI CCNNGG 4 cut(s) 157, 277, 356, 357
BseGI GGATG 2 cut(s) 119, 148
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 139
BseNI ACTGG 3 cut(s) 96, 101, 206
BseXI GCAGC 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 24, 196
BsiSI CCGG 2 cut(s) 45, 294
BslFI GGGAC 2 cut(s) 111, 374
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 35
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 2 cut(s) 111, 374
BsnI GGCC 2 cut(s) 24, 196
Bsp143I GATC 1 cut(s) 211
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 3 cut(s) 247, 250, 319
BspANI GGCC 2 cut(s) 24, 196
BspCNI CTCAG 1 cut(s) 138
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 37, 99
BspTI CTTAAG 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 3 cut(s) 96, 101, 206
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 4 cut(s) 157, 277, 356, 357
BssMI GATC 1 cut(s) 211
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 2 cut(s) 158, 358
Bst4CI ACNGT 1 cut(s) 256
BstACI GRCGYC 1 cut(s) 48
BstAFI CTTAAG 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 125
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 2 cut(s) 119, 148
BstFNI CGCG 1 cut(s) 321
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 3 cut(s) 10, 202, 258
BstNI CCWGG 2 cut(s) 158, 358
BstSCI CCNGG 3 cut(s) 156, 293, 356
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 272
BstXI CCANNNNNNTGG 1 cut(s) 139
BsuRI GGCC 2 cut(s) 24, 196
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 2 cut(s) 119, 148
BtsIMutI CAGTG 4 cut(s) 89, 108, 115, 252
Cac8I GCNNGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 3 cut(s) 98, 129, 194
CseI GACGC 2 cut(s) 37, 310
Csp6I GTAC 2 cut(s) 329, 339
CviAII CATG 1 cut(s) 278
CviJI RGCY 5 cut(s) 24, 60, 196, 285, 375
CviKI_1 RGCY 5 cut(s) 24, 60, 196, 285, 375
CviQI GTAC 2 cut(s) 329, 339
DdeI CTNAG 1 cut(s) 125
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
DriI GACNNNNNGTC 1 cut(s) 104
Eam1105I GACNNNNNGTC 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 277
Eco47I GGWCC 2 cut(s) 98, 129
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 156, 356
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 1 cut(s) 281
FaiI YATR 8 cut(s) 140, 191, 266, 268, 279, 350, 405, 444
FaqI GGGAC 2 cut(s) 111, 374
FatI CATG 1 cut(s) 277
FauNDI CATATG 1 cut(s) 266
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 247, 250, 286
FokI GGATG 2 cut(s) 126, 155
Fsp4HI GCNGC 3 cut(s) 247, 250, 286
GluI GCNGC 3 cut(s) 247, 250, 286
HaeIII GGCC 2 cut(s) 24, 196
HapII CCGG 2 cut(s) 45, 294
HgaI GACGC 2 cut(s) 37, 310
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 1 cut(s) 281
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HpaII CCGG 2 cut(s) 45, 294
HphI GGTGA 2 cut(s) 323, 345
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 3 cut(s) 35, 220, 390
Hpy188III TCNNGA 2 cut(s) 55, 127
Hpy8I GTNNAC 1 cut(s) 454
Hpy99I CGWCG 4 cut(s) 10, 13, 30, 53
HpyAV CCTTC 2 cut(s) 292, 395
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 202, 258
HpyF3I CTNAG 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 281
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 211
Lsp1109I GCAGC 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 3 cut(s) 8, 411, 427
MluCI AATT 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 3 cut(s) 14, 379, 431
MreI CGCCGGCG 1 cut(s) 44
MroNI GCCGGC 1 cut(s) 44
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 276
MspCI CTTAAG 1 cut(s) 70
MspI CCGG 2 cut(s) 45, 294
MspR9I CCNGG 3 cut(s) 158, 295, 358
MvaI CCWGG 2 cut(s) 158, 358
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 3 cut(s) 10, 202, 258
NaeI GCCGGC 1 cut(s) 46
NciI CCSGG 1 cut(s) 295
NcoI CCATGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 266
NdeII GATC 1 cut(s) 211
NgoMIV GCCGGC 1 cut(s) 44
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 2 cut(s) 37, 99
PasI CCCWGGG 1 cut(s) 357
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 48
PdiI GCCGGC 1 cut(s) 46
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 3 cut(s) 248, 251, 287
Psp6I CCWGG 2 cut(s) 156, 356
PspGI CCWGG 2 cut(s) 156, 356
PspN4I GGNNCC 2 cut(s) 37, 99
PspPI GGNCC 3 cut(s) 98, 129, 194
PsyI GACNNNGTC 1 cut(s) 133
RsaI GTAC 2 cut(s) 330, 340
RsaNI GTAC 2 cut(s) 329, 339
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 3 cut(s) 247, 250, 286
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 3 cut(s) 98, 129, 194
ScrFI CCNGG 3 cut(s) 158, 295, 358
SetI ASST 3 cut(s) 71, 188, 303
SgrAI CRCCGGYG 1 cut(s) 44
SinI GGWCC 2 cut(s) 98, 129
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 1 cut(s) 200
SsiI CCGC 3 cut(s) 247, 250, 319
StyD4I CCNGG 3 cut(s) 156, 293, 356
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 200
TauI GCSGC 2 cut(s) 249, 252
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 4 cut(s) 96, 108, 115, 259
TseI GCWGC 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 437
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 4 cut(s) 96, 108, 115, 259
Tth111I GACNNNGTC 1 cut(s) 133
Vha464I CTTAAG 1 cut(s) 70
VpaK11BI GGWCC 2 cut(s) 98, 129
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.