Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8084336.1

Orthogroup ID

OG0005929

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 450

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8084336.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 443 bp

atggagaagattgtcgggccagtctctgctggttctttaaggctggcttcaactgatgtcaacgtgaatcctattgttcgattcaattacttcaacagcccagtggatttgcaaaggtgtgtgaatgggacgcgaaagattggtgacattctcaggaccaggtctatggaggatttcaagttccagggatggtttgggaatagagattttaggtttatagggcctgcattgccagttgatcagtctgactttgacgtaatggcagatttctgccgccgcactgtaagcaccatatggcactaccatgggggctgcattgctgggaaggtggttgatggtgatttccgggtcattggtatagatgcactccgtgttgttgatgggtctacttttggtatatcaccagggacaaatcctcaggctacccttctgatgctcggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

147

Amino Acids

16.22

Weight (kDa)

7.74

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005929)

Species	Orthologous Gene IDs
malus_domestica	MD00G1005200.v1.1 MD03G1091500.v1.1 MD03G1091800.v1.1
prunus_persica	Prupe.1G093400_v2.0.a1 Prupe.3G029300_v2.0.a1
pyrus_communis	pycom10g23320
rosa_chinensis	RchiOBHm_Chr1g0337911 RchiOBHm_Chr1g0376511 RchiOBHm_Chr2g0095811 RchiOBHm_Chr2g0103621
rosa_laevigata	RLG00000016596 RLG00000017345
rosa_multiflora	Rmu_co8084336.1_g000001 Rmu_co8272793.1_g000001 Rmu_sc0001530.1_g000021 Rmu_sc0004388.1_g000008
rosa_roxburghii	Rroxscaffold_2G00146080
rosa_samantha	Rh1AG408100 Rh1BG371800 Rh1BG371900 Rh1CG385700 Rh1DG402900 Rh2AG164500 Rh2BG171600 Rh2CG171100 Rh2DG103400 Rh2DG169900 Rh4CG129100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	386
AccII	CGCG	1 cut(s)	133
AciI	CCGC	2 cut(s)	274, 277
AdeI	CACNNNGTG	1 cut(s)	371
AgsI	TTSAA	4 cut(s)	51, 85, 94, 178
AjnI	CCWGG	3 cut(s)	158, 183, 403
AloI	GAACNNNNNNTCC	2 cut(s)	164, 196
Alw26I	GTCTC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	17, 221
ApeKI	GCWGC	1 cut(s)	312
AspS9I	GGNCC	3 cut(s)	17, 156, 221
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	3 cut(s)	155, 350, 393
AvaII	GGWCC	1 cut(s)	156
AxyI	CCTNAGG	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	3 cut(s)	183, 329, 374
BciT130I	CCWGG	3 cut(s)	160, 185, 405
BclI	TGATCA	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	28
BisI	GCNGC	3 cut(s)	274, 277, 313
BlsI	GCNGC	3 cut(s)	275, 278, 314
Bme1390I	CCNGG	4 cut(s)	160, 185, 347, 405
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	3 cut(s)	17, 156, 221
BmrFI	CCNGG	4 cut(s)	160, 185, 347, 405
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	2 cut(s)	352, 423
BmuI	ACTGGG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	184, 304, 404
Bse1I	ACTGG	3 cut(s)	20, 101, 233
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	2 cut(s)	227, 315
BseBI	CCWGG	3 cut(s)	160, 185, 405
BseDI	CCNNGG	3 cut(s)	184, 304, 404
BseGI	GGATG	1 cut(s)	194
BseMI	GCAATG	2 cut(s)	227, 315
BseMII	CTCAG	2 cut(s)	166, 431
BseNI	ACTGG	3 cut(s)	20, 101, 233
BseXI	GCAGC	1 cut(s)	299
BseYI	CCCAGC	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	19, 223
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	2 cut(s)	142, 421
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	2 cut(s)	142, 421
BsnI	GGCC	2 cut(s)	19, 223
Bsp143I	GATC	1 cut(s)	238
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	2 cut(s)	274, 277
BspANI	GGCC	2 cut(s)	19, 223
BspCNI	CTCAG	2 cut(s)	165, 430
BspFNI	CGCG	1 cut(s)	133
BsrDI	GCAATG	2 cut(s)	227, 315
BsrI	ACTGG	3 cut(s)	20, 101, 233
BssECI	CCNNGG	3 cut(s)	184, 304, 404
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	3 cut(s)	160, 185, 405
Bst4CI	ACNGT	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	45, 225
BstDEI	CTNAG	2 cut(s)	152, 417
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	194
BstFNI	CGCG	1 cut(s)	133
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 285
BstNI	CCWGG	3 cut(s)	160, 185, 405
BstSCI	CCNGG	4 cut(s)	158, 183, 345, 403
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	166
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	19, 223
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	108, 279
Cac8I	GCNNGC	2 cut(s)	45, 225
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	17, 156, 221
CseI	GACGC	1 cut(s)	139
CsiI	ACCWGGT	1 cut(s)	158
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	7 cut(s)	19, 43, 47, 99, 223, 312, 422
CviKI_1	RGCY	7 cut(s)	19, 43, 47, 99, 223, 312, 422
DdeI	CTNAG	2 cut(s)	152, 417
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DraIII	CACNNNGTG	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	156
Eco81I	CCTNAGG	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	3 cut(s)	158, 183, 403
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	1 cut(s)	308
FaiI	YATR	7 cut(s)	167, 218, 293, 295, 306, 359, 398
FalI	AAGNNNNNCTT	2 cut(s)	31, 63
FaqI	GGGAC	2 cut(s)	142, 421
FatI	CATG	1 cut(s)	304
FauNDI	CATATG	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	3 cut(s)	274, 277, 313
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	3 cut(s)	274, 277, 313
GluI	GCNGC	3 cut(s)	274, 277, 313
GsaI	CCCAGC	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	19, 223
HapII	CCGG	1 cut(s)	346
HgaI	GACGC	1 cut(s)	139
Hin1II	CATG	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	67, 81
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	3 cut(s)	155, 350, 393
Hpy166II	GTNNAC	2 cut(s)	61, 387
Hpy188I	TCNGA	3 cut(s)	247, 432, 440
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	61, 387
HpyAV	CCTTC	2 cut(s)	319, 437
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	2 cut(s)	63, 255
HpyCH4V	TGCA	4 cut(s)	112, 227, 315, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 285
HpyF3I	CTNAG	2 cut(s)	152, 417
HpySE526I	ACGT	2 cut(s)	63, 255
Hsp92II	CATG	1 cut(s)	308
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	238
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	2 cut(s)	352, 423
MabI	ACCWGGT	1 cut(s)	158
MaeII	ACGT	2 cut(s)	63, 255
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	19
MluCI	AATT	1 cut(s)	85
MnlI	CCTC	2 cut(s)	163, 426
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	303
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	4 cut(s)	160, 185, 347, 405
MvaI	CCWGG	3 cut(s)	160, 185, 405
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	229, 285
NciI	CCSGG	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	304
NdeI	CATATG	1 cut(s)	293
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	308
NmuCI	GTSAC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	67, 81
PflFI	GACNNNGTC	1 cut(s)	160
PkrI	GCNGC	3 cut(s)	275, 278, 314
Psp6I	CCWGG	3 cut(s)	158, 183, 403
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	3 cut(s)	158, 183, 403
PspPI	GGNCC	3 cut(s)	17, 156, 221
PstNI	CAGNNNCTG	1 cut(s)	26
PsyI	GACNNNGTC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	3 cut(s)	274, 277, 313
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	3 cut(s)	17, 156, 221
ScrFI	CCNGG	4 cut(s)	160, 185, 347, 405
SetI	ASST	6 cut(s)	66, 119, 164, 215, 258, 330
SexAI	ACCWGGT	1 cut(s)	158
SfaNI	GCATC	2 cut(s)	352, 423
SinI	GGWCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	2 cut(s)	274, 277
StyD4I	CCNGG	4 cut(s)	158, 183, 345, 403
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	2 cut(s)	66, 258
TaqI	TCGA	1 cut(s)	79
TasI	AATT	1 cut(s)	85
TauI	GCSGC	2 cut(s)	276, 279
TfiI	GAWTC	2 cut(s)	67, 81
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	2 cut(s)	108, 286
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	108, 286
Tth111I	GACNNNGTC	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.