Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001530.1

Orthogroup ID

OG0005929

Physical Location & Seq

Genomic Coordinates Reverse (-)

62553 .. 63114

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001530.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgtttgataatcccagaaatggcatccaattgtgccaccaattccactggagcattcactcattcaagcggttggcattactgaatcaggggcttacattgaatcagcctccactgtcgtccaatttgcatccccagcccgtactgaccaagtctatggatgatttcaagttccaggggtggtttgggaataaggattttaggtttatagggcctgcattgccagttgatcagtctgactttgaccagatggcagatttctgccgccgcactgtaagcaccatatggcattaccatgggggctgcattgccgggaaggtggttgatggtgatttccgcgtcaatgtaccactccgtacttttggtatatcacccagggacaaatcctctggctacccttctgatacttggaaggtcagtgtcctcaaatcatgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

145

Amino Acids

16.51

Weight (kDa)

9.02

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005929)

Species	Orthologous Gene IDs
malus_domestica	MD00G1005200.v1.1 MD03G1091500.v1.1 MD03G1091800.v1.1
prunus_persica	Prupe.1G093400_v2.0.a1 Prupe.3G029300_v2.0.a1
pyrus_communis	pycom10g23320
rosa_chinensis	RchiOBHm_Chr1g0337911 RchiOBHm_Chr1g0376511 RchiOBHm_Chr2g0095811 RchiOBHm_Chr2g0103621
rosa_laevigata	RLG00000016596 RLG00000017345
rosa_multiflora	Rmu_co8084336.1_g000001 Rmu_co8272793.1_g000001 Rmu_sc0001530.1_g000021 Rmu_sc0004388.1_g000008
rosa_roxburghii	Rroxscaffold_2G00146080
rosa_samantha	Rh1AG408100 Rh1BG371800 Rh1BG371900 Rh1CG385700 Rh1DG402900 Rh2AG164500 Rh2BG171600 Rh2CG171100 Rh2DG103400 Rh2DG169900 Rh4CG129100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	339
AciI	CCGC	4 cut(s)	70, 265, 268, 337
AfaI	GTAC	3 cut(s)	144, 348, 358
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	67, 103, 169
AjnI	CCWGG	2 cut(s)	174, 374
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	2 cut(s)	341, 363
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	2 cut(s)	244, 320
BciT130I	CCWGG	2 cut(s)	176, 376
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	313
BisI	GCNGC	3 cut(s)	265, 268, 304
BlsI	GCNGC	3 cut(s)	266, 269, 305
Bme1390I	CCNGG	3 cut(s)	176, 313, 376
BmgT120I	GGNCC	1 cut(s)	212
BmrFI	CCNGG	3 cut(s)	176, 313, 376
BmsI	GCATC	2 cut(s)	33, 139
BpmI	CTGGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	313
BsaJI	CCNNGG	4 cut(s)	175, 295, 374, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	2 cut(s)	53, 224
Bse3DI	GCAATG	2 cut(s)	218, 306
BseBI	CCWGG	2 cut(s)	176, 376
BseDI	CCNNGG	4 cut(s)	175, 295, 374, 375
BseGI	GGATG	3 cut(s)	24, 130, 166
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	2 cut(s)	218, 306
BseNI	ACTGG	2 cut(s)	53, 224
BseXI	GCAGC	1 cut(s)	290
BseYI	CCCAGC	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	229
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	4 cut(s)	70, 265, 268, 337
BspANI	GGCC	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	339
BsrDI	GCAATG	2 cut(s)	218, 306
BsrI	ACTGG	2 cut(s)	53, 224
BssECI	CCNNGG	4 cut(s)	175, 295, 374, 375
BssMI	GATC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	2 cut(s)	176, 376
Bst4CI	ACNGT	2 cut(s)	117, 274
BstC8I	GCNNGC	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	3 cut(s)	24, 130, 166
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 220, 276
BstNI	CCWGG	2 cut(s)	176, 376
BstSCI	CCNGG	3 cut(s)	174, 311, 374
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	3 cut(s)	24, 130, 166
BtsIMutI	CAGTG	4 cut(s)	46, 113, 270, 424
Cac8I	GCNNGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	212
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	3 cut(s)	143, 347, 357
CviAII	CATG	2 cut(s)	296, 432
CviJI	RGCY	6 cut(s)	94, 109, 139, 214, 303, 393
CviKI_1	RGCY	6 cut(s)	94, 109, 139, 214, 303, 393
CviQI	GTAC	3 cut(s)	143, 347, 357
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	174, 374
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	299, 435
FaiI	YATR	7 cut(s)	158, 209, 284, 286, 297, 368, 433
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	2 cut(s)	295, 431
FauNDI	CATATG	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	265, 268, 304
FokI	GGATG	3 cut(s)	11, 117, 173
Fsp4HI	GCNGC	3 cut(s)	265, 268, 304
GluI	GCNGC	3 cut(s)	265, 268, 304
GsaI	CCCAGC	1 cut(s)	139
GsuI	CTGGAG	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	1 cut(s)	312
HgaI	GACGC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	299, 435
HinfI	GANTC	2 cut(s)	85, 103
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	2 cut(s)	341, 363
Hpy188I	TCNGA	2 cut(s)	238, 403
HpyAV	CCTTC	3 cut(s)	310, 406, 408
HpyCH4III	ACNGT	2 cut(s)	117, 274
HpyCH4V	TGCA	3 cut(s)	130, 218, 306
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 220, 276
Hsp92II	CATG	2 cut(s)	299, 435
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	2 cut(s)	33, 139
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MfeI	CAATTG	1 cut(s)	29
MluCI	AATT	3 cut(s)	29, 41, 124
MnlI	CCTC	3 cut(s)	120, 397, 434
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	3 cut(s)	176, 313, 376
MunI	CAATTG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	54
MvaI	CCWGG	2 cut(s)	176, 376
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	136, 220, 276
NciI	CCSGG	1 cut(s)	313
NcoI	CCATGG	1 cut(s)	295
NdeI	CATATG	1 cut(s)	284
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	299, 435
PasI	CCCWGGG	1 cut(s)	375
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	85, 103
PflFI	GACNNNGTC	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	266, 269, 305
Psp6I	CCWGG	2 cut(s)	174, 374
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	2 cut(s)	174, 374
PspPI	GGNCC	1 cut(s)	212
PsyI	GACNNNGTC	1 cut(s)	151
RsaI	GTAC	3 cut(s)	144, 348, 358
RsaNI	GTAC	3 cut(s)	143, 347, 357
RseI	CAYNNNNRTG	1 cut(s)	294
SatI	GCNGC	3 cut(s)	265, 268, 304
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	3 cut(s)	176, 313, 376
SetI	ASST	3 cut(s)	206, 321, 417
SfaNI	GCATC	2 cut(s)	33, 139
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	3 cut(s)	29, 41, 124
SsiI	CCGC	4 cut(s)	70, 265, 268, 337
StyD4I	CCNGG	3 cut(s)	174, 311, 374
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	2 cut(s)	117, 274
TasI	AATT	3 cut(s)	29, 41, 124
TauI	GCSGC	2 cut(s)	267, 270
TfiI	GAWTC	2 cut(s)	85, 103
TscAI	CASTG	4 cut(s)	53, 120, 277, 424
TseI	GCWGC	1 cut(s)	303
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	4 cut(s)	53, 120, 277, 424
Tth111I	GACNNNGTC	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.