Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8272793.1

Orthogroup ID

OG0005929

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 730

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8272793.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

aaatggcatccaattgtgccaccaattccactggagcattcactcattcaagcggttggcattactgaatcaggggcttacattgaatcagcctccactgtcgtccaatttgcatccccagcccgtactccagtggtcagtggatgtgatgttctcaggaccaagtctatggatgatttcaagttccaggggtggtttgggaataaggattttaggtttatagggcctgcattgccagttgatcagtctgactttgaccagatggcagatttctgccgcggcactgtaagcaccatatggcattaccatgggggctgcattgccgggaaggtggttgatggtgatttccgcgtcaatgtaccactccgtacttttggtatatcacccagggacaaatcctctggctacccttctgatacttggaaggtcagtgtcctcaaatcatgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

149

Amino Acids

16.38

Weight (kDa)

7.06

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005929)

Species	Orthologous Gene IDs
malus_domestica	MD00G1005200.v1.1 MD03G1091500.v1.1 MD03G1091800.v1.1
prunus_persica	Prupe.1G093400_v2.0.a1 Prupe.3G029300_v2.0.a1
pyrus_communis	pycom10g23320
rosa_chinensis	RchiOBHm_Chr1g0337911 RchiOBHm_Chr1g0376511 RchiOBHm_Chr2g0095811 RchiOBHm_Chr2g0103621
rosa_laevigata	RLG00000016596 RLG00000017345
rosa_multiflora	Rmu_co8084336.1_g000001 Rmu_co8272793.1_g000001 Rmu_sc0001530.1_g000021 Rmu_sc0004388.1_g000008
rosa_roxburghii	Rroxscaffold_2G00146080
rosa_samantha	Rh1AG408100 Rh1BG371800 Rh1BG371900 Rh1CG385700 Rh1DG402900 Rh2AG164500 Rh2BG171600 Rh2CG171100 Rh2DG103400 Rh2DG169900 Rh4CG129100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	279, 351
AciI	CCGC	4 cut(s)	53, 277, 279, 349
AfaI	GTAC	3 cut(s)	127, 360, 370
AgsI	TTSAA	3 cut(s)	50, 86, 181
AjnI	CCWGG	2 cut(s)	186, 386
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	159, 224
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	353, 375
AvaII	GGWCC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	256, 332
BciT130I	CCWGG	2 cut(s)	188, 388
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	325
BisI	GCNGC	3 cut(s)	277, 280, 316
BlsI	GCNGC	3 cut(s)	278, 281, 317
Bme1390I	CCNGG	3 cut(s)	188, 325, 388
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	159, 224
BmrFI	CCNGG	3 cut(s)	188, 325, 388
BmsI	GCATC	2 cut(s)	16, 122
BpmI	CTGGAG	2 cut(s)	53, 114
BpuMI	CCSGG	1 cut(s)	325
BsaJI	CCNNGG	5 cut(s)	187, 277, 307, 386, 387
Bse1I	ACTGG	3 cut(s)	36, 131, 236
Bse3DI	GCAATG	2 cut(s)	230, 318
BseBI	CCWGG	2 cut(s)	188, 388
BseDI	CCNNGG	5 cut(s)	187, 277, 307, 386, 387
BseGI	GGATG	4 cut(s)	7, 113, 149, 178
BseMI	GCAATG	2 cut(s)	230, 318
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	3 cut(s)	36, 131, 236
BseXI	GCAGC	1 cut(s)	302
BseYI	CCCAGC	1 cut(s)	118
Bsh1236I	CGCG	2 cut(s)	279, 351
BshFI	GGCC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	241
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	4 cut(s)	53, 277, 279, 349
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	2 cut(s)	279, 351
BsrDI	GCAATG	2 cut(s)	230, 318
BsrI	ACTGG	3 cut(s)	36, 131, 236
BssECI	CCNNGG	5 cut(s)	187, 277, 307, 386, 387
BssMI	GATC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	2 cut(s)	188, 388
Bst4CI	ACNGT	2 cut(s)	100, 286
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	2 cut(s)	277, 307
BstF5I	GGATG	4 cut(s)	7, 113, 149, 178
BstFNI	CGCG	2 cut(s)	279, 351
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 232, 288
BstNI	CCWGG	2 cut(s)	188, 388
BstSCI	CCNGG	3 cut(s)	186, 323, 386
BstUI	CGCG	2 cut(s)	279, 351
BstV1I	GCAGC	1 cut(s)	302
BstXI	CCANNNNNNTGG	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	226
BtgI	CCRYGG	2 cut(s)	277, 307
BtsCI	GGATG	4 cut(s)	7, 113, 149, 178
BtsIMutI	CAGTG	6 cut(s)	29, 96, 138, 145, 282, 436
Cac8I	GCNNGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	159, 224
Cfr42I	CCGCGG	1 cut(s)	280
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	3 cut(s)	126, 359, 369
CviAII	CATG	2 cut(s)	308, 444
CviJI	RGCY	6 cut(s)	77, 92, 122, 226, 315, 405
CviKI_1	RGCY	6 cut(s)	77, 92, 122, 226, 315, 405
CviQI	GTAC	3 cut(s)	126, 359, 369
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	186, 386
EcoT14I	CCWWGG	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	2 cut(s)	311, 447
FaiI	YATR	7 cut(s)	170, 221, 296, 298, 309, 380, 445
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	2 cut(s)	307, 443
FauNDI	CATATG	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	277, 280, 316
FokI	GGATG	3 cut(s)	100, 156, 185
Fsp4HI	GCNGC	3 cut(s)	277, 280, 316
GluI	GCNGC	3 cut(s)	277, 280, 316
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	2 cut(s)	53, 114
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	1 cut(s)	324
HgaI	GACGC	1 cut(s)	340
Hin1II	CATG	2 cut(s)	311, 447
HinfI	GANTC	2 cut(s)	68, 86
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	2 cut(s)	353, 375
Hpy188I	TCNGA	2 cut(s)	250, 415
Hpy188III	TCNNGA	1 cut(s)	157
HpyAV	CCTTC	3 cut(s)	322, 418, 420
HpyCH4III	ACNGT	2 cut(s)	100, 286
HpyCH4V	TGCA	3 cut(s)	113, 230, 318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 232, 288
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	311, 447
Ksp22I	TGATCA	1 cut(s)	241
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	2 cut(s)	16, 122
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MfeI	CAATTG	1 cut(s)	12
MluCI	AATT	3 cut(s)	12, 24, 107
MnlI	CCTC	3 cut(s)	103, 409, 446
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	3 cut(s)	188, 325, 388
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	37
MvaI	CCWGG	2 cut(s)	188, 388
MvnI	CGCG	2 cut(s)	279, 351
MwoI	GCNNNNNNNGC	3 cut(s)	119, 232, 288
NciI	CCSGG	1 cut(s)	325
NcoI	CCATGG	1 cut(s)	307
NdeI	CATATG	1 cut(s)	296
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	311, 447
PasI	CCCWGGG	1 cut(s)	387
PctI	GAATGC	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	68, 86
PflFI	GACNNNGTC	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	278, 281, 317
Psp6I	CCWGG	2 cut(s)	186, 386
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	2 cut(s)	186, 386
PspPI	GGNCC	2 cut(s)	159, 224
PsyI	GACNNNGTC	1 cut(s)	163
RsaI	GTAC	3 cut(s)	127, 360, 370
RsaNI	GTAC	3 cut(s)	126, 359, 369
RseI	CAYNNNNRTG	1 cut(s)	306
SacII	CCGCGG	1 cut(s)	280
SatI	GCNGC	3 cut(s)	277, 280, 316
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	2 cut(s)	159, 224
ScrFI	CCNGG	3 cut(s)	188, 325, 388
SetI	ASST	3 cut(s)	218, 333, 429
SfaNI	GCATC	2 cut(s)	16, 122
Sfr303I	CCGCGG	1 cut(s)	280
SgrBI	CCGCGG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	3 cut(s)	12, 24, 107
SsiI	CCGC	4 cut(s)	53, 277, 279, 349
StyD4I	CCNGG	3 cut(s)	186, 323, 386
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	2 cut(s)	100, 286
TasI	AATT	3 cut(s)	12, 24, 107
TauI	GCSGC	2 cut(s)	279, 282
TfiI	GAWTC	2 cut(s)	68, 86
TscAI	CASTG	6 cut(s)	36, 103, 138, 145, 289, 436
TseI	GCWGC	1 cut(s)	315
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	6 cut(s)	36, 103, 138, 145, 289, 436
Tth111I	GACNNNGTC	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.