Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005929

Physical Location & Seq

Genomic Coordinates Forward (+)

63583152 .. 63594759

Gene Structure 11608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG408100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCGATAGCTGTAGACACTGTAAACGCAGTTGTGAATCGGACCCTCAGAGCTGGAGTCATACTCGAAAAAATCACAGGTCCACTTTCCACAGGTCATCTAGAGCTCAGGAACCTAAACCCTGATGACACTCCGTCTGTCACATTTAACTACTTCAAAGAGCCAGAGGACTTGAGGAGGTGCATTGAGGGTATGATGACCATTATCAGTGTGGTCAATTCCAAATCCTTTTCGAAATTCCGTTATAAAAGCATGCCAATCGAAGCTCTCATTAACCTAATGCTGACTTTGCCGATAAACAATAGGCGAAGACATGCAAATGCTGCATTTTCCTTGGAACAATTTTGCATAGACACAGTGATGACCATATGGCATTATCATGGAGGTTGTCAAGTTGGTAGGGTTGTGGACAAAGAATACAGGGTGCTTGGTGTTGATTCACTTAGGGTTGTTGATGGATCGACATTTCATTCGAGTCCAGGAACTAATCCCCAAGCTACTGTCATGATGCTTGGCAGGCAAGAAATGATATCATGCAAAGAAAGACTCAATTTTGACATATGCCATCAAGTTGGATCTCAGACCATGTCGAAGCGAGGGCGCGGAGGGTCTGCCGGAAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGAGGCGACGGTGAACTGCGCCGACAACACCGGTGCCAAGAATCTCTACATTATCTCTGTGAAGGGAATCAAGGGTCGTCTGAACTTGTTGCCGTCGGCTTGTGTGGGTGACATGGTCATGGCCACTGTGAAGAAAGGAAAGCCGGACCTCAGGAAGAAGGTGCTGCCAGCTGTCATTGTGAGGCAGCGCAAGCCGTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

284

Amino Acids

31.46

Weight (kDa)

9.8

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMC_oxred_C	PF05199	28 - 172	1.7e-26	GMC oxidoreductase
Ribosomal_L14	PF00238	215 - 283	2.2e-17	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005929)

Species	Orthologous Gene IDs
malus_domestica	MD00G1005200.v1.1 MD03G1091500.v1.1 MD03G1091800.v1.1
prunus_persica	Prupe.1G093400_v2.0.a1 Prupe.3G029300_v2.0.a1
pyrus_communis	pycom10g23320
rosa_chinensis	RchiOBHm_Chr1g0337911 RchiOBHm_Chr1g0376511 RchiOBHm_Chr2g0095811 RchiOBHm_Chr2g0103621
rosa_laevigata	RLG00000016596 RLG00000017345
rosa_multiflora	Rmu_co8084336.1_g000001 Rmu_co8272793.1_g000001 Rmu_sc0001530.1_g000021 Rmu_sc0004388.1_g000008
rosa_roxburghii	Rroxscaffold_2G00146080
rosa_samantha	Rh1AG408100 Rh1BG371800 Rh1BG371900 Rh1CG385700 Rh1DG402900 Rh2AG164500 Rh2BG171600 Rh2CG171100 Rh2DG103400 Rh2DG169900 Rh4CG129100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	683
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	1 cut(s)	603
AccIII	TCCGGA	1 cut(s)	627
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	2 cut(s)	466, 583
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	1 cut(s)	236
AgeI	ACCGGT	1 cut(s)	680
AgsI	TTSAA	1 cut(s)	157
AhdI	GACNNNNNGTC	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	6 cut(s)	11, 53, 106, 266, 497, 821
AluI	AGCT	6 cut(s)	11, 53, 106, 266, 497, 821
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	2 cut(s)	466, 583
Aor13HI	TCCGGA	1 cut(s)	627
AoxI	GGCC	1 cut(s)	771
ApeKI	GCWGC	3 cut(s)	323, 814, 835
ApoI	RAATTY	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	454, 486
AsiGI	ACCGGT	1 cut(s)	680
AspLEI	GCGC	3 cut(s)	603, 671, 840
AspS9I	GGNCC	3 cut(s)	42, 80, 796
AsuHPI	GGTGA	2 cut(s)	673, 770
AsuII	TTCGAA	1 cut(s)	233
AvaII	GGWCC	3 cut(s)	42, 80, 796
AxyI	CCTNAGG	1 cut(s)	800
BalI	TGGCCA	1 cut(s)	773
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	3 cut(s)	310, 801, 847
BccI	CCATC	2 cut(s)	449, 573
BceAI	ACGGC	2 cut(s)	727, 829
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	1 cut(s)	480
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	3 cut(s)	324, 815, 836
BlsI	GCNGC	3 cut(s)	325, 816, 837
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	3 cut(s)	42, 80, 796
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmgT120I	GGNCC	3 cut(s)	42, 80, 796
BmiI	GGNNCC	3 cut(s)	44, 113, 685
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	316
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	333, 845
BsaWI	WCCGGW	2 cut(s)	627, 680
Bse118I	RCCGGY	2 cut(s)	646, 680
Bse21I	CCTNAGG	1 cut(s)	800
BseAI	TCCGGA	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	333, 845
BseGI	GGATG	1 cut(s)	636
BseMII	CTCAG	4 cut(s)	61, 121, 593, 814
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	310, 801, 847
BseYI	CCCAGC	1 cut(s)	637
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	1 cut(s)	773
BshNI	GGYRCC	1 cut(s)	683
BshTI	ACCGGT	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	5 cut(s)	615, 628, 647, 681, 794
BsnI	GGCC	1 cut(s)	773
Bsp119I	TTCGAA	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp13I	TCCGGA	1 cut(s)	627
Bsp143I	GATC	2 cut(s)	458, 575
BspACI	CCGC	1 cut(s)	603
BspANI	GGCC	1 cut(s)	773
BspCNI	CTCAG	4 cut(s)	60, 120, 592, 813
BspEI	TCCGGA	1 cut(s)	627
BspFNI	CGCG	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	3 cut(s)	44, 113, 685
BspPI	GGATC	2 cut(s)	466, 583
BspT104I	TTCGAA	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	683
BsrFI	RCCGGY	2 cut(s)	646, 680
BssAI	RCCGGY	2 cut(s)	646, 680
BssECI	CCNNGG	2 cut(s)	333, 845
BssMI	GATC	2 cut(s)	458, 575
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	5 cut(s)	22, 358, 502, 661, 778
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	4 cut(s)	254, 518, 819, 842
BstDEI	CTNAG	5 cut(s)	47, 107, 443, 579, 800
BstDSI	CCRYGG	1 cut(s)	845
BstF5I	GGATG	1 cut(s)	636
BstFNI	CGCG	1 cut(s)	603
BstHHI	GCGC	3 cut(s)	603, 671, 840
BstKTI	GATC	2 cut(s)	461, 578
BstMBI	GATC	2 cut(s)	458, 575
BstMWI	GCNNNNNNNGC	5 cut(s)	289, 323, 517, 643, 841
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	2 cut(s)	256, 317
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	12
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	3 cut(s)	310, 801, 847
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	575
BstXI	CCANNNNNNTGG	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	575
Bsu36I	CCTNAGG	1 cut(s)	800
BsuRI	GGCC	1 cut(s)	773
BtgI	CCRYGG	1 cut(s)	845
BtsCI	GGATG	1 cut(s)	636
BtsIMutI	CAGTG	4 cut(s)	18, 214, 363, 774
Cac8I	GCNNGC	4 cut(s)	254, 518, 819, 842
CciI	TCATGA	1 cut(s)	504
CfoI	GCGC	3 cut(s)	603, 671, 840
Cfr10I	RCCGGY	2 cut(s)	646, 680
Cfr13I	GGNCC	3 cut(s)	42, 80, 796
CspAI	ACCGGT	1 cut(s)	680
CviAII	CATG	8 cut(s)	253, 314, 380, 505, 534, 586, 763, 769
DdeI	CTNAG	5 cut(s)	47, 107, 443, 579, 800
DpnI	GATC	2 cut(s)	460, 577
DpnII	GATC	2 cut(s)	458, 575
DriI	GACNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	771
Eam1105I	GACNNNNNGTC	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	531
Eco47I	GGWCC	3 cut(s)	42, 80, 796
Eco53kI	GAGCTC	1 cut(s)	106
Eco81I	CCTNAGG	1 cut(s)	800
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	478
EcoRV	GATATC	1 cut(s)	531
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	8 cut(s)	256, 317, 383, 508, 537, 589, 766, 772
FatI	CATG	8 cut(s)	252, 313, 379, 504, 533, 585, 762, 768
FauNDI	CATATG	2 cut(s)	368, 560
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	324, 815, 836
FokI	GGATG	1 cut(s)	643
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	3 cut(s)	324, 815, 836
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	3 cut(s)	602, 670, 839
GluI	GCNGC	3 cut(s)	324, 815, 836
GsaI	CCCAGC	1 cut(s)	641
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	773
HapII	CCGG	5 cut(s)	615, 628, 647, 681, 794
HhaI	GCGC	3 cut(s)	603, 671, 840
Hin1II	CATG	8 cut(s)	256, 317, 383, 508, 537, 589, 766, 772
Hin6I	GCGC	3 cut(s)	601, 669, 838
HinP1I	GCGC	3 cut(s)	601, 669, 838
HinfI	GANTC	7 cut(s)	37, 57, 437, 475, 546, 691, 717
HpaII	CCGG	5 cut(s)	615, 628, 647, 681, 794
HphI	GGTGA	2 cut(s)	673, 770
Hpy166II	GTNNAC	5 cut(s)	16, 25, 83, 409, 664
Hpy188I	TCNGA	4 cut(s)	42, 50, 582, 732
Hpy188III	TCNNGA	5 cut(s)	101, 109, 505, 628, 802
Hpy8I	GTNNAC	5 cut(s)	16, 25, 83, 409, 664
Hpy99I	CGWCG	2 cut(s)	661, 748
HpyAV	CCTTC	2 cut(s)	706, 802
HpyCH4III	ACNGT	5 cut(s)	22, 358, 502, 661, 778
HpyCH4V	TGCA	5 cut(s)	183, 317, 326, 348, 537
HpyF10VI	GCNNNNNNNGC	5 cut(s)	289, 323, 517, 643, 841
HpyF3I	CTNAG	5 cut(s)	47, 107, 443, 579, 800
Hsp92II	CATG	8 cut(s)	256, 317, 383, 508, 537, 589, 766, 772
HspAI	GCGC	3 cut(s)	601, 669, 838
Kpn2I	TCCGGA	1 cut(s)	627
Kzo9I	GATC	2 cut(s)	458, 575
Lsp1109I	GCAGC	3 cut(s)	310, 801, 847
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	139, 758
MalI	GATC	2 cut(s)	460, 577
MboI	GATC	2 cut(s)	458, 575
MboII	GAAGA	3 cut(s)	321, 793, 817
MflI	RGATCY	1 cut(s)	575
MhlI	GDGCHC	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	773
MluCI	AATT	4 cut(s)	217, 236, 341, 550
MluNI	TGGCCA	1 cut(s)	773
MlyI	GAGTC	3 cut(s)	66, 484, 540
MmeI	TCCRAC	1 cut(s)	553
Mox20I	TGGCCA	1 cut(s)	773
MroI	TCCGGA	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	773
MseI	TTAA	2 cut(s)	147, 273
MslI	CAYNNNNRTG	4 cut(s)	318, 359, 378, 767
Msp20I	TGGCCA	1 cut(s)	773
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	5 cut(s)	615, 628, 647, 681, 794
MspR9I	CCNGG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	480
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	5 cut(s)	289, 323, 517, 643, 841
NdeI	CATATG	2 cut(s)	368, 560
NdeII	GATC	2 cut(s)	458, 575
NlaIII	CATG	8 cut(s)	256, 317, 383, 508, 537, 589, 766, 772
NlaIV	GGNNCC	3 cut(s)	44, 113, 685
NmuCI	GTSAC	2 cut(s)	139, 758
NspI	RCATGY	2 cut(s)	256, 317
NspV	TTCGAA	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	256
PagI	TCATGA	1 cut(s)	504
PfeI	GAWTC	4 cut(s)	37, 437, 691, 717
PflFI	GACNNNGTC	2 cut(s)	586, 764
PfoI	TCCNGGA	1 cut(s)	478
PinAI	ACCGGT	1 cut(s)	680
PkrI	GCNGC	3 cut(s)	325, 816, 837
PleI	GAGTC	3 cut(s)	65, 483, 540
PpsI	GAGTC	3 cut(s)	65, 483, 540
PsiI	TTATAA	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	478
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	3 cut(s)	44, 113, 685
PspPI	GGNCC	3 cut(s)	42, 80, 796
PsuI	RGATCY	1 cut(s)	575
PsyI	GACNNNGTC	2 cut(s)	586, 764
PvuII	CAGCTG	1 cut(s)	821
RseI	CAYNNNNRTG	4 cut(s)	318, 359, 378, 767
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	147, 273
SatI	GCNGC	3 cut(s)	324, 815, 836
Sau3AI	GATC	2 cut(s)	458, 575
Sau96I	GGNCC	3 cut(s)	42, 80, 796
SchI	GAGTC	3 cut(s)	66, 484, 540
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	108
SfaNI	GCATC	1 cut(s)	498
SfcI	CTRYAG	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	233
SgrAI	CRCCGGYG	1 cut(s)	680
SinI	GGWCC	3 cut(s)	42, 80, 796
SmiMI	CAYNNNNRTG	4 cut(s)	318, 359, 378, 767
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SphI	GCATGC	1 cut(s)	256
Sse9I	AATT	4 cut(s)	217, 236, 341, 550
SsiI	CCGC	1 cut(s)	603
SspMI	CTAG	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	5 cut(s)	22, 358, 502, 661, 778
TaqI	TCGA	6 cut(s)	66, 233, 261, 461, 473, 590
TasI	AATT	4 cut(s)	217, 236, 341, 550
TfiI	GAWTC	4 cut(s)	37, 437, 691, 717
Tru1I	TTAA	2 cut(s)	147, 273
Tru9I	TTAA	2 cut(s)	147, 273
TscAI	CASTG	4 cut(s)	25, 214, 363, 781
TseFI	GTSAC	2 cut(s)	139, 758
TseI	GCWGC	3 cut(s)	323, 814, 835
Tsp45I	GTSAC	2 cut(s)	139, 758
TspDTI	ATGAA	1 cut(s)	458
TspGWI	ACGGA	2 cut(s)	123, 230
TspRI	CASTG	4 cut(s)	25, 214, 363, 781
Tth111I	GACNNNGTC	2 cut(s)	586, 764
VpaK11BI	GGWCC	3 cut(s)	42, 80, 796
XapI	RAATTY	1 cut(s)	236
XbaI	TCTAGA	1 cut(s)	100
XceI	RCATGY	2 cut(s)	256, 317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.