Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003358

Physical Location & Seq

Genomic Coordinates Reverse (-)

17015308 .. 17018250

Gene Structure 2943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G112000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGCTTCCAGCAAAGTCTTTGGTTTGCTTTGCATGTCTGTGTTTCTATTGACTCATAATTCAGTGCTTGCTTCATTTGACTATGGGGATGCTCTCACCAAGTCTTTGTTGTATTATGAGGCTCAACGATCTGGAAAGTTGCCTCCAAACCAAAGGGTGCAATGGCGTGGAGATTCTGGGCTTAAAGATGGAAGTGATGCTGGTGTTGATCTTGTGGGAGGATATTATGATGCTGGGGACAATGTCAAGTTTGGATTTCCCATGGCATTCACAATCACAATGCTTTCATGGAGTACTATAGAATTCGGGAGCAAACTTGAAGCCAAGAGTGAGCTCTCAAATGCATTGGATGCCATCAAATGGGGCACTGATTATTTGATCAAGGCACACGCTGCGCCAAATGTCCTCTATGGCGAAATTGGCGATGGTGATTCTGATCATGAATGCTGGCAGAGACCCGAAGACATGACTACTCCGCGGACCACCTTTAAGATCGACGAGCAGCATCCGGGAGCTGACCTTGCTGGTGAAACCGCTGCTGCTTTGGCTGCTGCTTCCATTGCTTTCAAGGATAAAGACTCTAAGTATGCGTCTGAACTTTTGACCCATGCTAAAGAGCTATTCGAGTTTGCTCGTGATCACTCTGGTGTTTATCAGAATAGCATTAATGTAGCAGGAAAATTCTACTCCAGCAGTGGATATGAGGATGAACTATTGTGGGCTGCTGCCTGGCTTCATCGTGCCACCGATGAAAAAACATACCTGGATTATCTTGGTCAAGCAGGTAATACTGGTGGTGCAAGAACTGTGTTCTCTTGGGATGACAAGTTTATTGGTGCACAAGTGCTTGTTGCAAAGAAGGGCAACAGCAATGTGAAGAAGACTCCTGGTGGGTTGTTGTGGTTTTTGCCATGGAACAATCTTCAGTACACTTCAACTGCTGTGTTCGTCGCAAATGTTTATTCTGAATACTTGAACGCCAAGCATGCCGCCATTCAATGCCCTGGAGGCATTGTCCAGCCTAAGGATCTTGCTGACTTGGCCCAATCACAGGTGGATTATATCTTGGGTTCAAACCCCGGTGGCACGAGTTTCATGGTTGGATTTGGGACAAAATATCCAACTCAAGTGCACCACAGAGCAGCATCCATTGTCTCCATCAAGAAAGATGCAGCTCCTGTTTCATGCAAAGGTGGCTTCGACTCATGGTTCAACAACAACTCACCAAACCCTAATGTACTGGATGGAGCAATTGTCGGAGGCCCGGATGAGAATGATGCTTACACAGATTCAAGATCAAACTACCAAATGGCTGAACCAGCAACTGTTTCCACAGCTCCACTTGTTGGCGTTCTCGCCAAACTCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

457

Amino Acids

49.27

Weight (kDa)

5.24

Isoelectric Point (pI)

27.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44540 AT2G44550 AT2G44560 AT2G44570 AT2G44570
fragaria_vesca	FvH4_4g36880 FvH4_4g36880 FvH4_7g08460
malus_domestica	MD02G1228000.v1.1 MD13G1006100.v1.1 MD13G1006300.v1.1
prunus_persica	Prupe.2G112000_v2.0.a1
pyrus_communis	pycom13g00500 pycom13g00520
rosa_chinensis	RchiOBHm_Chr0c20g0500171 RchiOBHm_Chr1g0340181 RchiOBHm_Chr1g0343211 RchiOBHm_Chr4g0446651
rosa_laevigata	RLG00000005642 RLG00000028991
rosa_multiflora	Rmu_co8338879.1_g000001 Rmu_sc0001753.1_g000044 Rmu_sc0006993.1_g000010
rosa_roxburghii	Rroxscaffold_4G00310960
rosa_rugosa	Rorug01G0165700
rosa_samantha	Rh1AG179800 Rh1AG181300 Rh1CG168100 Rh1DG181500 Rh4AG434800 Rh4BG443900 Rh4CG461200 Rh4DG442700
rosa_wichuraiana	Rw1G012330 Rw1G015050 Rw4G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	773
AccB7I	CCANNNNNTGG	2 cut(s)	360, 1346
AccII	CGCG	1 cut(s)	478
AciI	CCGC	4 cut(s)	476, 478, 534, 990
AclWI	GGATC	1 cut(s)	1035
AcsI	RAATTY	2 cut(s)	302, 680
AcuI	CTGAAG	1 cut(s)	908
AfaI	GTAC	3 cut(s)	295, 929, 1239
AfiI	CCNNNNNNNGG	4 cut(s)	360, 1024, 1051, 1346
AgsI	TTSAA	8 cut(s)	320, 568, 936, 976, 998, 1074, 1213, 1293
AjnI	CCWGG	4 cut(s)	728, 762, 886, 1003
AleI	CACNNNNGTG	1 cut(s)	645
AluBI	AGCT	5 cut(s)	334, 515, 619, 1175, 1337
AluI	AGCT	5 cut(s)	334, 515, 619, 1175, 1337
Alw21I	GWGCWC	3 cut(s)	336, 841, 1134
Alw26I	GTCTC	2 cut(s)	448, 1159
Alw44I	GTGCAC	2 cut(s)	837, 1130
AlwI	GGATC	1 cut(s)	1035
AlwNI	CAGNNNCTG	2 cut(s)	1178, 1325
AoxI	GGCC	2 cut(s)	1041, 1261
ApaLI	GTGCAC	2 cut(s)	837, 1130
ApoI	RAATTY	2 cut(s)	302, 680
AseI	ATTAAT	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	3 cut(s)	480, 1042, 1262
AsuC2I	CCSGG	3 cut(s)	510, 1080, 1265
AsuHPI	GGTGA	4 cut(s)	88, 440, 539, 1215
AvaII	GGWCC	1 cut(s)	480
AxyI	CCTNAGG	1 cut(s)	1023
BaeGI	GKGCMC	3 cut(s)	368, 841, 1134
BanII	GRGCYC	1 cut(s)	336
BauI	CACGAG	2 cut(s)	633, 1087
BbsI	GAAGAC	2 cut(s)	468, 887
Bbv12I	GWGCWC	3 cut(s)	336, 841, 1134
BccI	CCATC	5 cut(s)	182, 362, 419, 1166, 1238
BciT130I	CCWGG	4 cut(s)	730, 764, 888, 1005
BclI	TGATCA	3 cut(s)	378, 436, 637
BcnI	CCSGG	3 cut(s)	510, 1080, 1265
BcoDI	GTCTC	2 cut(s)	448, 1159
BfmI	CTRYAG	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	773
BglI	GCCNNNNNGGC	1 cut(s)	1008
BmcAI	AGTACT	1 cut(s)	295
Bme1390I	CCNGG	7 cut(s)	510, 730, 764, 888, 1005, 1080, 1265
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	3 cut(s)	480, 1042, 1262
BmrFI	CCNGG	7 cut(s)	510, 730, 764, 888, 1005, 1080, 1265
BmsI	GCATC	8 cut(s)	79, 187, 220, 340, 514, 1154, 1159, 1267
BpiI	GAAGAC	2 cut(s)	468, 887
BpmI	CTGGAG	2 cut(s)	673, 1026
BpuEI	CTTGAG	1 cut(s)	1110
BpuMI	CCSGG	3 cut(s)	510, 1080, 1265
BsaBI	GATNNNNATC	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	5 cut(s)	261, 476, 911, 1003, 1078
BsaXI	ACNNNNNCTCC	4 cut(s)	999, 1029, 1239, 1269
Bsc4I	CCNNNNNNNGG	4 cut(s)	360, 1024, 1051, 1346
Bse1I	ACTGG	2 cut(s)	796, 1245
Bse21I	CCTNAGG	1 cut(s)	1023
Bse3DI	GCAATG	3 cut(s)	167, 558, 877
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	4 cut(s)	730, 764, 888, 1005
BseDI	CCNNGG	5 cut(s)	261, 476, 911, 1003, 1078
BseGI	GGATG	8 cut(s)	94, 355, 505, 712, 826, 1145, 1249, 1273
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	4 cut(s)	360, 1024, 1051, 1346
BseMI	GCAATG	3 cut(s)	167, 558, 877
BseNI	ACTGG	2 cut(s)	796, 1245
BseSI	GKGCMC	3 cut(s)	368, 841, 1134
BseYI	CCCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	2 cut(s)	1043, 1263
BsiHKAI	GWGCWC	3 cut(s)	336, 841, 1134
BsiSI	CCGG	3 cut(s)	509, 1080, 1265
BslFI	GGGAC	2 cut(s)	251, 1123
BslI	CCNNNNNNNGG	4 cut(s)	360, 1024, 1051, 1346
BsmAI	GTCTC	2 cut(s)	448, 1159
BsmFI	GGGAC	2 cut(s)	251, 1123
BsmI	GAATGC	2 cut(s)	266, 449
BsnI	GGCC	2 cut(s)	1043, 1263
Bso31I	GGTCTC	1 cut(s)	448
Bsp1286I	GDGCHC	4 cut(s)	336, 368, 841, 1134
Bsp143I	GATC	8 cut(s)	128, 208, 378, 436, 492, 637, 1027, 1295
Bsp19I	CCATGG	2 cut(s)	261, 911
BspACI	CCGC	4 cut(s)	476, 478, 534, 990
BspANI	GGCC	2 cut(s)	1043, 1263
BspFNI	CGCG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	439
BspMI	ACCTGC	1 cut(s)	773
BspPI	GGATC	1 cut(s)	1035
BspTNI	GGTCTC	1 cut(s)	448
BsrDI	GCAATG	3 cut(s)	167, 558, 877
BsrI	ACTGG	2 cut(s)	796, 1245
BssECI	CCNNGG	5 cut(s)	261, 476, 911, 1003, 1078
BssMI	GATC	8 cut(s)	128, 208, 378, 436, 492, 637, 1027, 1295
BssSI	CACGAG	2 cut(s)	633, 1087
BssT1I	CCWWGG	2 cut(s)	261, 911
Bst2BI	CACGAG	2 cut(s)	633, 1087
Bst2UI	CCWGG	4 cut(s)	730, 764, 888, 1005
Bst4CI	ACNGT	2 cut(s)	808, 1327
BstAPI	GCANNNNNTGC	2 cut(s)	350, 392
BstC8I	GCNNGC	3 cut(s)	69, 449, 987
BstDEI	CTNAG	2 cut(s)	582, 1023
BstDSI	CCRYGG	3 cut(s)	261, 476, 911
BstF5I	GGATG	8 cut(s)	94, 355, 505, 712, 826, 1145, 1249, 1273
BstFNI	CGCG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	8 cut(s)	131, 211, 381, 439, 495, 640, 1030, 1298
BstMAI	GTCTC	2 cut(s)	448, 1159
BstMBI	GATC	8 cut(s)	128, 208, 378, 436, 492, 637, 1027, 1295
BstNI	CCWGG	4 cut(s)	730, 764, 888, 1005
BstNSI	RCATGY	2 cut(s)	37, 989
BstSCI	CCNGG	7 cut(s)	508, 728, 762, 886, 1003, 1078, 1263
BstSFI	CTRYAG	1 cut(s)	297
BstSLI	GKGCMC	3 cut(s)	368, 841, 1134
BstUI	CGCG	1 cut(s)	478
BstV2I	GAAGAC	2 cut(s)	468, 887
BstX2I	RGATCY	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	1027
Bsu36I	CCTNAGG	1 cut(s)	1023
BsuRI	GGCC	2 cut(s)	1043, 1263
BtgI	CCRYGG	3 cut(s)	261, 476, 911
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	8 cut(s)	94, 355, 505, 712, 826, 1145, 1249, 1273
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	3 cut(s)	69, 366, 700
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	3 cut(s)	69, 449, 987
CaiI	CAGNNNCTG	2 cut(s)	1178, 1325
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	3 cut(s)	480, 1042, 1262
Cfr42I	CCGCGG	1 cut(s)	479
CseI	GACGC	1 cut(s)	579
Csp6I	GTAC	3 cut(s)	294, 928, 1238
CviQI	GTAC	3 cut(s)	294, 928, 1238
DdeI	CTNAG	2 cut(s)	582, 1023
DpnI	GATC	8 cut(s)	130, 210, 380, 438, 494, 639, 1029, 1297
DpnII	GATC	8 cut(s)	128, 208, 378, 436, 492, 637, 1027, 1295
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	2 cut(s)	261, 911
Eco24I	GRGCYC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	480
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	908
Eco81I	CCTNAGG	1 cut(s)	1023
EcoICRI	GAGCTC	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	4 cut(s)	728, 762, 886, 1003
EcoT14I	CCWWGG	2 cut(s)	261, 911
EcoT22I	ATGCAT	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	2 cut(s)	261, 911
FaqI	GGGAC	2 cut(s)	251, 1123
FbaI	TGATCA	3 cut(s)	378, 436, 637
FokI	GGATG	8 cut(s)	101, 362, 492, 719, 833, 1132, 1256, 1280
FriOI	GRGCYC	1 cut(s)	336
GlaI	GCGC	1 cut(s)	396
GsaI	CCCAGC	1 cut(s)	237
GsuI	CTGGAG	2 cut(s)	673, 1026
HaeIII	GGCC	2 cut(s)	1043, 1263
HapII	CCGG	3 cut(s)	509, 1080, 1265
HgaI	GACGC	1 cut(s)	579
HhaI	GCGC	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	7 cut(s)	52, 173, 431, 578, 883, 1202, 1289
HpaII	CCGG	3 cut(s)	509, 1080, 1265
HphI	GGTGA	4 cut(s)	88, 440, 539, 1215
Hpy166II	GTNNAC	3 cut(s)	839, 930, 1132
Hpy188I	TCNGA	5 cut(s)	436, 595, 657, 967, 1259
Hpy188III	TCNNGA	6 cut(s)	132, 307, 440, 635, 1162, 1293
Hpy8I	GTNNAC	3 cut(s)	839, 930, 1132
Hpy99I	CGWCG	2 cut(s)	500, 953
HpyAV	CCTTC	1 cut(s)	853
HpyCH4III	ACNGT	2 cut(s)	808, 1327
HpyCH4V	TGCA	9 cut(s)	33, 160, 344, 800, 839, 854, 1132, 1172, 1188
HpyF3I	CTNAG	2 cut(s)	582, 1023
HspAI	GCGC	1 cut(s)	395
Ksp22I	TGATCA	3 cut(s)	378, 436, 637
KspI	CCGCGG	1 cut(s)	479
Kzo9I	GATC	8 cut(s)	128, 208, 378, 436, 492, 637, 1027, 1295
LmnI	GCTCC	5 cut(s)	309, 512, 1180, 1247, 1342
LweI	GCATC	8 cut(s)	79, 187, 220, 340, 514, 1154, 1159, 1267
MalI	GATC	8 cut(s)	130, 210, 380, 438, 494, 639, 1029, 1297
MboI	GATC	8 cut(s)	128, 208, 378, 436, 492, 637, 1027, 1295
MboII	GAAGA	4 cut(s)	473, 889, 892, 914
MfeI	CAATTG	1 cut(s)	1251
MflI	RGATCY	1 cut(s)	1027
MhlI	GDGCHC	4 cut(s)	336, 368, 841, 1134
MluCI	AATT	5 cut(s)	58, 302, 417, 680, 1251
MlyI	GAGTC	4 cut(s)	46, 572, 877, 1196
MmeI	TCCRAC	3 cut(s)	1081, 1145, 1237
MnlI	CCTC	7 cut(s)	112, 153, 212, 416, 697, 1001, 1253
Mph1103I	ATGCAT	1 cut(s)	346
MseI	TTAA	3 cut(s)	183, 489, 666
MslI	CAYNNNNRTG	2 cut(s)	38, 645
MspA1I	CMGCKG	2 cut(s)	478, 536
MspI	CCGG	3 cut(s)	509, 1080, 1265
MspR9I	CCNGG	7 cut(s)	510, 730, 764, 888, 1005, 1080, 1265
MunI	CAATTG	1 cut(s)	1251
Mva1269I	GAATGC	2 cut(s)	266, 449
MvaI	CCWGG	4 cut(s)	730, 764, 888, 1005
MvnI	CGCG	1 cut(s)	478
NciI	CCSGG	3 cut(s)	510, 1080, 1265
NcoI	CCATGG	2 cut(s)	261, 911
NdeII	GATC	8 cut(s)	128, 208, 378, 436, 492, 637, 1027, 1295
NsiI	ATGCAT	1 cut(s)	346
NspI	RCATGY	2 cut(s)	37, 989
OliI	CACNNNNGTG	1 cut(s)	645
PaeI	GCATGC	1 cut(s)	989
PagI	TCATGA	1 cut(s)	439
PctI	GAATGC	2 cut(s)	266, 449
PfeI	GAWTC	3 cut(s)	173, 431, 1289
PflFI	GACNNNGTC	1 cut(s)	242
PflMI	CCANNNNNTGG	2 cut(s)	360, 1346
PfoI	TCCNGGA	1 cut(s)	508
PleI	GAGTC	4 cut(s)	46, 572, 877, 1196
PpsI	GAGTC	4 cut(s)	46, 572, 877, 1196
PshBI	ATTAAT	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	4 cut(s)	728, 762, 886, 1003
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	4 cut(s)	728, 762, 886, 1003
PspPI	GGNCC	3 cut(s)	480, 1042, 1262
PstNI	CAGNNNCTG	2 cut(s)	1178, 1325
PsuI	RGATCY	1 cut(s)	1027
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	3 cut(s)	295, 929, 1239
RsaNI	GTAC	3 cut(s)	294, 928, 1238
RseI	CAYNNNNRTG	2 cut(s)	38, 645
SacI	GAGCTC	1 cut(s)	336
SacII	CCGCGG	1 cut(s)	479
SaqAI	TTAA	3 cut(s)	183, 489, 666
Sau3AI	GATC	8 cut(s)	128, 208, 378, 436, 492, 637, 1027, 1295
Sau96I	GGNCC	3 cut(s)	480, 1042, 1262
ScaI	AGTACT	1 cut(s)	295
SchI	GAGTC	4 cut(s)	46, 572, 877, 1196
ScrFI	CCNGG	7 cut(s)	510, 730, 764, 888, 1005, 1080, 1265
SduI	GDGCHC	4 cut(s)	336, 368, 841, 1134
SfaNI	GCATC	8 cut(s)	79, 187, 220, 340, 514, 1154, 1159, 1267
SfcI	CTRYAG	1 cut(s)	297
Sfr303I	CCGCGG	1 cut(s)	479
SgrBI	CCGCGG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	480
SmiMI	CAYNNNNRTG	2 cut(s)	38, 645
SmlI	CTYRAG	1 cut(s)	1125
SmoI	CTYRAG	1 cut(s)	1125
SphI	GCATGC	1 cut(s)	989
Sse9I	AATT	5 cut(s)	58, 302, 417, 680, 1251
SsiI	CCGC	4 cut(s)	476, 478, 534, 990
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	7 cut(s)	508, 728, 762, 886, 1003, 1078, 1263
StyI	CCWWGG	2 cut(s)	261, 911
TaaI	ACNGT	2 cut(s)	808, 1327
TaqI	TCGA	3 cut(s)	495, 624, 1200
TasI	AATT	5 cut(s)	58, 302, 417, 680, 1251
TatI	WGTACW	3 cut(s)	293, 927, 1237
TauI	GCSGC	1 cut(s)	992
TfiI	GAWTC	3 cut(s)	173, 431, 1289
Tru1I	TTAA	3 cut(s)	183, 489, 666
Tru9I	TTAA	3 cut(s)	183, 489, 666
TscAI	CASTG	3 cut(s)	69, 373, 700
TspDTI	ATGAA	8 cut(s)	63, 276, 456, 723, 725, 765, 1084, 1173
TspRI	CASTG	3 cut(s)	69, 373, 700
Tth111I	GACNNNGTC	1 cut(s)	242
Van91I	CCANNNNNTGG	2 cut(s)	360, 1346
VneI	GTGCAC	2 cut(s)	837, 1130
VpaK11BI	GGWCC	1 cut(s)	480
VspI	ATTAAT	1 cut(s)	666
XapI	RAATTY	2 cut(s)	302, 680
XceI	RCATGY	2 cut(s)	37, 989
ZrmI	AGTACT	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.