Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003358

Physical Location & Seq

Genomic Coordinates Forward (+)

318650 .. 320155

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGCGTTCACAATAACAATGCTATCATGGAGCACAATAGAGATGGTCAGCCAGCTCCAGGCAAAGCAAGAGCTCGCAAACGCCTTGCTCGCCATCAAGTGGGGAACCGATTACTTGATCAAAGCACATCCACAGCCGGACGTGCTCTACGCGCAAGTTGGACAGTCCGATTCTGACCATGGATGTTGGCAAAGACCGGAAGACATGACCACCCCGAGAACCTCCTTCAAAATTGATGCTCAACACCCTGGCTCCGATCTTGCTGCTGAAACTGCTGCTGCTTTTGCCGCTGCTTCAATTGCTTTCAAGAATTCGGACTCTCAATACTCGTCCACGCTTCTAATGCACGCGAAACAACTTTTTGATTTTGCCCGCGATCACCCCGGTCTTTATCAGGACAGCATCCCTTATGCCGGAAAAAGCTACAGCAGTTCCGGTTATCATGTAAGAGATGAAATGTTGTGGGCAGCAGCATGGCTGCATCGCGCTACAAATGAAAAACCGTACCTGGATTACGTTGAGCAAGCACAAGATATAGGGGGCACAAGATATGCATTCTCATGGGATGACAAATACCTCGGCGCACAGCTCTTGGTTGCAATGCTTGTACTGGAGGGGAAGGTTGACAATGCAGGAAAATGGGCAGAATACAGGAGCCACGCAGAGGAGTTCATTTGTTCGTGCATCCAGAAAGGAAGCATGAACAGGAAGCGTACACCCGGAGGTTTGCTATCGTTTGCGCAGTGGGACAACATTCAATGCGTCGCCACTGCTACCTTCGCCACCATTGTTTATTCCAATTACTTGGCCGCCAAAAATGCCTCCGTCAACTGTGCTGCTGGCAACGCTAACCCTTTTGATCTTGCTGCATTCGTCAAATCACAGGTGGATTATATATTGGGGTCAAACCCCAAGAACATGAGTTACATGGTTGGATATGGAGCAAATTATCCGAAGCGGATTCATCACAGAGGTGCATCAATTATATCAATCAAGCAGGATCCGACACCAGTGACATGCGGCGGAGGGTACACTTGGTGCCACAGCAACGCACCGAACCCAAATGTGCTAGATGGAGCTGTCGTGGGCCCAGATAAAAATGATGGTTTCTCCGACGATAGAGGCAATTTTCAACTTGGTGAACCCACAACTTATAACATCGGTCCATTAGTTGGTGTCTTCGCTTACTTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

399

Amino Acids

43.66

Weight (kDa)

5.86

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44540 AT2G44550 AT2G44560 AT2G44570 AT2G44570
fragaria_vesca	FvH4_4g36880 FvH4_4g36880 FvH4_7g08460
malus_domestica	MD02G1228000.v1.1 MD13G1006100.v1.1 MD13G1006300.v1.1
prunus_persica	Prupe.2G112000_v2.0.a1
pyrus_communis	pycom13g00500 pycom13g00520
rosa_chinensis	RchiOBHm_Chr0c20g0500171 RchiOBHm_Chr1g0340181 RchiOBHm_Chr1g0343211 RchiOBHm_Chr4g0446651
rosa_laevigata	RLG00000005642 RLG00000028991
rosa_multiflora	Rmu_co8338879.1_g000001 Rmu_sc0001753.1_g000044 Rmu_sc0006993.1_g000010
rosa_roxburghii	Rroxscaffold_4G00310960
rosa_rugosa	Rorug01G0165700
rosa_samantha	Rh1AG179800 Rh1AG181300 Rh1CG168100 Rh1DG181500 Rh4AG434800 Rh4BG443900 Rh4CG461200 Rh4DG442700
rosa_wichuraiana	Rw1G012330 Rw1G015050 Rw4G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1155
Acc16I	TGCGCA	1 cut(s)	741
AccB1I	GGYRCC	1 cut(s)	1038
AccB7I	CCANNNNNTGG	2 cut(s)	99, 1172
AccII	CGCG	4 cut(s)	152, 350, 375, 486
AciI	CCGC	6 cut(s)	288, 373, 810, 958, 1020, 1023
AclWI	GGATC	2 cut(s)	995, 1008
AcoI	YGGCCR	1 cut(s)	807
AcsI	RAATTY	1 cut(s)	310
AdeI	CACNNNGTG	1 cut(s)	1038
AfaI	GTAC	4 cut(s)	506, 609, 715, 1031
AfiI	CCNNNNNNNGG	5 cut(s)	58, 99, 413, 664, 1172
AgsI	TTSAA	5 cut(s)	229, 297, 307, 758, 1133
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	3 cut(s)	57, 247, 507
AleI	CACNNNNGTG	1 cut(s)	972
AluBI	AGCT	5 cut(s)	55, 73, 423, 589, 1079
AluI	AGCT	5 cut(s)	55, 73, 423, 589, 1079
Alw21I	GWGCWC	3 cut(s)	35, 75, 147
AlwI	GGATC	2 cut(s)	995, 1008
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	2 cut(s)	807, 1087
ApaI	GGGCCC	1 cut(s)	1091
ApeKI	GCWGC	9 cut(s)	263, 275, 278, 290, 467, 470, 478, 836, 866
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	4 cut(s)	154, 488, 584, 742
AspS9I	GGNCC	3 cut(s)	1087, 1088, 1163
AsuC2I	CCSGG	2 cut(s)	384, 720
AsuHPI	GGTGA	2 cut(s)	371, 1151
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	1163
BaeGI	GKGCMC	2 cut(s)	545, 1091
BamHI	GGATCC	1 cut(s)	1000
BanI	GGYRCC	1 cut(s)	1038
BanII	GRGCYC	2 cut(s)	75, 1091
BbsI	GAAGAC	2 cut(s)	207, 1171
Bbv12I	GWGCWC	3 cut(s)	35, 75, 147
BbvI	GCAGC	9 cut(s)	250, 262, 265, 277, 465, 479, 482, 823, 853
BccI	CCATC	4 cut(s)	37, 101, 1067, 1097
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	3 cut(s)	59, 249, 509
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	2 cut(s)	384, 720
BfaI	CTAG	1 cut(s)	1070
BfmI	CTRYAG	1 cut(s)	424
Bme1390I	CCNGG	5 cut(s)	59, 249, 384, 509, 720
Bme18I	GGWCC	1 cut(s)	1163
BmeT110I	CYCGRG	1 cut(s)	214
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	3 cut(s)	1087, 1088, 1163
BmiI	GGNNCC	6 cut(s)	106, 253, 656, 1002, 1040, 1089
BmrFI	CCNGG	5 cut(s)	59, 249, 384, 509, 720
BmsI	GCATC	5 cut(s)	226, 411, 490, 693, 986
BpiI	GAAGAC	2 cut(s)	207, 1171
BpmI	CTGGAG	2 cut(s)	41, 632
BpuMI	CCSGG	2 cut(s)	384, 720
BsaJI	CCNNGG	4 cut(s)	178, 247, 382, 577
BsaWI	WCCGGW	2 cut(s)	196, 434
BsaXI	ACNNNNNCTCC	4 cut(s)	236, 266, 1068, 1098
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 99, 413, 664, 1172
Bse1I	ACTGG	2 cut(s)	615, 1010
Bse3DI	GCAATG	1 cut(s)	606
BseBI	CCWGG	3 cut(s)	59, 249, 509
BseDI	CCNNGG	4 cut(s)	178, 247, 382, 577
BseGI	GGATG	5 cut(s)	127, 188, 402, 571, 684
BseLI	CCNNNNNNNGG	5 cut(s)	58, 99, 413, 664, 1172
BseMI	GCAATG	1 cut(s)	606
BseNI	ACTGG	2 cut(s)	615, 1010
BseRI	GAGGAG	1 cut(s)	680
BseSI	GKGCMC	2 cut(s)	545, 1091
BseXI	GCAGC	9 cut(s)	250, 262, 265, 277, 465, 479, 482, 823, 853
Bsh1236I	CGCG	4 cut(s)	152, 350, 375, 486
BshFI	GGCC	2 cut(s)	809, 1089
BshNI	GGYRCC	1 cut(s)	1038
BsiHKAI	GWGCWC	3 cut(s)	35, 75, 147
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	6 cut(s)	137, 197, 384, 414, 435, 720
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	5 cut(s)	58, 99, 413, 664, 1172
BsmFI	GGGAC	1 cut(s)	761
BsmI	GAATGC	2 cut(s)	554, 869
BsnI	GGCC	2 cut(s)	809, 1089
BsoBI	CYCGRG	1 cut(s)	214
Bsp120I	GGGCCC	1 cut(s)	1087
Bsp1286I	GDGCHC	5 cut(s)	35, 75, 147, 545, 1091
Bsp143I	GATC	5 cut(s)	117, 256, 376, 859, 1000
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	6 cut(s)	288, 373, 810, 958, 1020, 1023
BspANI	GGCC	2 cut(s)	809, 1089
BspFNI	CGCG	4 cut(s)	152, 350, 375, 486
BspLI	GGNNCC	6 cut(s)	106, 253, 656, 1002, 1040, 1089
BspPI	GGATC	2 cut(s)	995, 1008
BspT107I	GGYRCC	1 cut(s)	1038
BsrDI	GCAATG	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	615, 1010
BssECI	CCNNGG	4 cut(s)	178, 247, 382, 577
BssMI	GATC	5 cut(s)	117, 256, 376, 859, 1000
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	3 cut(s)	59, 249, 509
Bst4CI	ACNGT	3 cut(s)	165, 504, 833
BstC8I	GCNNGC	7 cut(s)	53, 75, 90, 348, 373, 525, 841
BstDEI	CTNAG	1 cut(s)	1194
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	5 cut(s)	127, 188, 402, 571, 684
BstFNI	CGCG	4 cut(s)	152, 350, 375, 486
BstHHI	GCGC	4 cut(s)	154, 488, 584, 742
BstKTI	GATC	5 cut(s)	120, 259, 379, 862, 1003
BstMBI	GATC	5 cut(s)	117, 256, 376, 859, 1000
BstNI	CCWGG	3 cut(s)	59, 249, 509
BstNSI	RCATGY	1 cut(s)	1020
BstSCI	CCNGG	5 cut(s)	57, 247, 382, 507, 718
BstSFI	CTRYAG	1 cut(s)	424
BstSLI	GKGCMC	2 cut(s)	545, 1091
BstUI	CGCG	4 cut(s)	152, 350, 375, 486
BstV1I	GCAGC	9 cut(s)	250, 262, 265, 277, 465, 479, 482, 823, 853
BstV2I	GAAGAC	2 cut(s)	207, 1171
BstX2I	RGATCY	1 cut(s)	1000
BstXI	CCANNNNNNTGG	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	1000
BsuRI	GGCC	2 cut(s)	809, 1089
BtgI	CCRYGG	1 cut(s)	178
BtgZI	GCGATG	1 cut(s)	467
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	5 cut(s)	127, 188, 402, 571, 684
BtsI	GCAGTG	2 cut(s)	749, 768
BtsIMutI	CAGTG	3 cut(s)	749, 768, 1017
Cac8I	GCNNGC	7 cut(s)	53, 75, 90, 348, 373, 525, 841
CfoI	GCGC	4 cut(s)	154, 488, 584, 742
Cfr13I	GGNCC	3 cut(s)	1087, 1088, 1163
CseI	GACGC	1 cut(s)	751
Csp6I	GTAC	4 cut(s)	505, 608, 714, 1030
CviQI	GTAC	4 cut(s)	505, 608, 714, 1030
DdeI	CTNAG	1 cut(s)	1194
DpnI	GATC	5 cut(s)	119, 258, 378, 861, 1002
DpnII	GATC	5 cut(s)	117, 256, 376, 859, 1000
DraIII	CACNNNGTG	1 cut(s)	1038
EaeI	YGGCCR	1 cut(s)	807
EciI	GGCGGA	1 cut(s)	1038
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	178
Eco24I	GRGCYC	2 cut(s)	75, 1091
Eco47I	GGWCC	1 cut(s)	1163
Eco53kI	GAGCTC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	3 cut(s)	57, 247, 507
EcoT14I	CCWWGG	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	556
EcoT38I	GRGCYC	2 cut(s)	75, 1091
ErhI	CCWWGG	1 cut(s)	178
FaqI	GGGAC	1 cut(s)	761
FauI	CCCGC	1 cut(s)	380
FbaI	TGATCA	1 cut(s)	117
FokI	GGATG	5 cut(s)	114, 195, 389, 578, 671
FriOI	GRGCYC	2 cut(s)	75, 1091
FspBI	CTAG	1 cut(s)	1070
FspI	TGCGCA	1 cut(s)	741
GlaI	GCGC	4 cut(s)	153, 487, 583, 741
GsuI	CTGGAG	2 cut(s)	41, 632
HaeIII	GGCC	2 cut(s)	809, 1089
HapII	CCGG	6 cut(s)	137, 197, 384, 414, 435, 720
HgaI	GACGC	1 cut(s)	751
HhaI	GCGC	4 cut(s)	154, 488, 584, 742
Hin6I	GCGC	4 cut(s)	152, 486, 582, 740
HinP1I	GCGC	4 cut(s)	152, 486, 582, 740
HincII	GTYRAC	2 cut(s)	625, 829
HindII	GTYRAC	2 cut(s)	625, 829
HinfI	GANTC	3 cut(s)	170, 317, 961
HpaII	CCGG	6 cut(s)	137, 197, 384, 414, 435, 720
HphI	GGTGA	2 cut(s)	371, 1151
Hpy166II	GTNNAC	7 cut(s)	9, 333, 625, 716, 829, 1032, 1142
Hpy188I	TCNGA	7 cut(s)	169, 175, 256, 316, 954, 1005, 1114
Hpy188III	TCNNGA	3 cut(s)	307, 395, 688
Hpy8I	GTNNAC	7 cut(s)	9, 333, 625, 716, 829, 1032, 1142
Hpy99I	CGWCG	2 cut(s)	767, 1118
HpyAV	CCTTC	3 cut(s)	235, 613, 787
HpyCH4III	ACNGT	3 cut(s)	165, 504, 833
HpyCH4IV	ACGT	2 cut(s)	141, 516
HpyCH4V	TGCA	8 cut(s)	346, 481, 554, 599, 632, 684, 869, 977
HpyF3I	CTNAG	1 cut(s)	1194
HpySE526I	ACGT	2 cut(s)	141, 516
HspAI	GCGC	4 cut(s)	152, 486, 582, 740
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	5 cut(s)	117, 256, 376, 859, 1000
LmnI	GCTCC	6 cut(s)	30, 60, 257, 654, 941, 1076
Lsp1109I	GCAGC	9 cut(s)	250, 262, 265, 277, 465, 479, 482, 823, 853
LweI	GCATC	5 cut(s)	226, 411, 490, 693, 986
MaeI	CTAG	1 cut(s)	1070
MaeII	ACGT	2 cut(s)	141, 516
MaeIII	GTNAC	2 cut(s)	923, 1012
MalI	GATC	5 cut(s)	119, 258, 378, 861, 1002
MboI	GATC	5 cut(s)	117, 256, 376, 859, 1000
MboII	GAAGA	2 cut(s)	212, 1171
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	1000
MhlI	GDGCHC	5 cut(s)	35, 75, 147, 545, 1091
MluCI	AATT	7 cut(s)	231, 297, 310, 799, 946, 981, 1126
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	4 cut(s)	139, 913, 1028, 1137
MnlI	CCTC	9 cut(s)	232, 587, 607, 658, 716, 832, 965, 1019, 1115
Mph1103I	ATGCAT	1 cut(s)	556
MslI	CAYNNNNRTG	2 cut(s)	559, 972
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	6 cut(s)	137, 197, 384, 414, 435, 720
MspR9I	CCNGG	5 cut(s)	59, 249, 384, 509, 720
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	2 cut(s)	554, 869
MvaI	CCWGG	3 cut(s)	59, 249, 509
MvnI	CGCG	4 cut(s)	152, 350, 375, 486
NciI	CCSGG	2 cut(s)	384, 720
NcoI	CCATGG	1 cut(s)	178
NdeII	GATC	5 cut(s)	117, 256, 376, 859, 1000
NlaIV	GGNNCC	6 cut(s)	106, 253, 656, 1002, 1040, 1089
NmeAIII	GCCGAG	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	1012
NsbI	TGCGCA	1 cut(s)	741
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	1 cut(s)	1020
OliI	CACNNNNGTG	1 cut(s)	972
PctI	GAATGC	2 cut(s)	554, 869
PfeI	GAWTC	2 cut(s)	170, 961
PflMI	CCANNNNNTGG	2 cut(s)	99, 1172
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PsiI	TTATAA	1 cut(s)	1155
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	3 cut(s)	57, 247, 507
PspGI	CCWGG	3 cut(s)	57, 247, 507
PspN4I	GGNNCC	6 cut(s)	106, 253, 656, 1002, 1040, 1089
PspOMI	GGGCCC	1 cut(s)	1087
PspPI	GGNCC	3 cut(s)	1087, 1088, 1163
PsrI	GAACNNNNNNTAC	2 cut(s)	908, 940
PsuI	RGATCY	1 cut(s)	1000
RsaI	GTAC	4 cut(s)	506, 609, 715, 1031
RsaNI	GTAC	4 cut(s)	505, 608, 714, 1030
RseI	CAYNNNNRTG	2 cut(s)	559, 972
SacI	GAGCTC	1 cut(s)	75
Sau3AI	GATC	5 cut(s)	117, 256, 376, 859, 1000
Sau96I	GGNCC	3 cut(s)	1087, 1088, 1163
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	5 cut(s)	59, 249, 384, 509, 720
SduI	GDGCHC	5 cut(s)	35, 75, 147, 545, 1091
SfaNI	GCATC	5 cut(s)	226, 411, 490, 693, 986
SfcI	CTRYAG	1 cut(s)	424
SinI	GGWCC	1 cut(s)	1163
SmiMI	CAYNNNNRTG	2 cut(s)	559, 972
Sse9I	AATT	7 cut(s)	231, 297, 310, 799, 946, 981, 1126
SsiI	CCGC	6 cut(s)	288, 373, 810, 958, 1020, 1023
SspMI	CTAG	1 cut(s)	1070
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	5 cut(s)	57, 247, 382, 507, 718
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	3 cut(s)	165, 504, 833
TaiI	ACGT	2 cut(s)	144, 519
TaqII	GACCGA	1 cut(s)	1151
TasI	AATT	7 cut(s)	231, 297, 310, 799, 946, 981, 1126
TatI	WGTACW	1 cut(s)	607
TauI	GCSGC	3 cut(s)	290, 812, 1023
TfiI	GAWTC	2 cut(s)	170, 961
TscAI	CASTG	3 cut(s)	749, 775, 1017
TseFI	GTSAC	1 cut(s)	1012
TseI	GCWGC	9 cut(s)	263, 275, 278, 290, 467, 470, 478, 836, 866
Tsp45I	GTSAC	1 cut(s)	1012
TspDTI	ATGAA	5 cut(s)	468, 510, 661, 716, 953
TspGWI	ACGGA	1 cut(s)	814
TspRI	CASTG	3 cut(s)	749, 775, 1017
Van91I	CCANNNNNTGG	2 cut(s)	99, 1172
VpaK11BI	GGWCC	1 cut(s)	1163
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	1020
XspI	CTAG	1 cut(s)	1070
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.