Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003358

Physical Location & Seq

Genomic Coordinates Forward (+)

305724 .. 307541

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGATCGTACTGGTCGTGTTTTTGGATTGGTTGGGTGCTTATTGCTGGTAATGCTTCATGGAATTGCGTGTCAGGTAGATTACCATGCAGCACTTACCAAGTCTCTGTTGTATTTTGAGGGTCAACGCTCTGGAAAGTTGCCGGATAATAATAAGCTGCAGAGAGTGCAATGGCGTGGAGATTCTGCACTCAAAGACGGCGCTGATGCTGGAATTGATCTGGTGGGAGGATACTACGATGCCGGAGACAATCTCAAGCTAGGGTTTCCAATGGCATTCACAATAACAATGTTGTCGTGGAGCCAAATAGAGATGGGCAGCCAACTCAAGGCAAAGCAAGAGCTCACAAATGTGTTGCATGCCATCAAGTGGGGAACGGATTACTTGATCAAAGCGCATCCCAAGCCTGAGGTGCTCTACGCGCAGATCGGTGAGCCTGATTCCGACCATGGATGTTGGCAAAGGCCGGAAGACATGGCCACCCCAAGAACCGCCTTCAAGATTGATGACCAACATCCTGGCTCCGATCTTGCTGCCGAAACTGCTGCTGCTTTTGCCGCAGCTTCAATCGCTTTCAAGAATTCGGACTATCAATACTCATCCAAGCTTCTAACGCACGCGAAACAGCTTTTTGATTTTGCATGCAATCACCCCGGTCTTTATCAGGACAGCATCCCTTCTGCCGGAAAAGTCTACGCCAGTAGTGGCTATCATGATGAACTGTTGTGGGCAGCAGCATGGCTACATCGTGCTACAAATGAAAAAAGGTACCTGGATCACGTTGAGCAAGCAGAAGACGTAGGGGGAACAAGATCCGAATTCTCATGGGATGACAAATACGTTGGCGCACAGATCTTGATTGCAAGACTTGTATTGGAGGGAAAGGTTGAGAATGGAGGAAAGTGGGCCGCATGCAAGAGCCACGCAGAGGAGTTCATATGCTCGTGCATTCAGAAAGGGAACACCAAAGTGCCGCAGACACCCGGTGGCTTGTTGTGGTTTTCGTCCTGGGATAACATTCAATACGTAGCCACCGCTACCTTCGCCACCATTGTCTATTCCAATTATTTGGCCACCAAATATGCCTCCCTCAACTGTGCTGCTGGCAACGCTAATCCTTCTGATCTTATTGCATTCGTCAAATCACAGGTGGATTATATATTGGGGTCAAACGCCAATAACATGAGTTACATGGTTGGATATGGAGGAAACTATCCACAGCGGATTCATCACAGAGGAGCATCAATAATATCGATCAAGAAGGACTCGACACCAGTGACATGCAAAGGAGGGTACGCCGATTGGTTCAACAGAGAAGCAGCGAATCCAAATGTCCTGCATGGAGCAGTCGTGAGTCCAAATGAAAATGATGGCTTCTCCGATGAAAGAAGCAATTTTCAACATGGTGAACCCACAACATATAACAATGGACCACTAGTTGGTGTCTTGGCTCACTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

488

Amino Acids

53.42

Weight (kDa)

6.01

Isoelectric Point (pI)

27.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44540 AT2G44550 AT2G44560 AT2G44570 AT2G44570
fragaria_vesca	FvH4_4g36880 FvH4_4g36880 FvH4_7g08460
malus_domestica	MD02G1228000.v1.1 MD13G1006100.v1.1 MD13G1006300.v1.1
prunus_persica	Prupe.2G112000_v2.0.a1
pyrus_communis	pycom13g00500 pycom13g00520
rosa_chinensis	RchiOBHm_Chr0c20g0500171 RchiOBHm_Chr1g0340181 RchiOBHm_Chr1g0343211 RchiOBHm_Chr4g0446651
rosa_laevigata	RLG00000005642 RLG00000028991
rosa_multiflora	Rmu_co8338879.1_g000001 Rmu_sc0001753.1_g000044 Rmu_sc0006993.1_g000010
rosa_roxburghii	Rroxscaffold_4G00310960
rosa_rugosa	Rorug01G0165700
rosa_samantha	Rh1AG179800 Rh1AG181300 Rh1CG168100 Rh1DG181500 Rh4AG434800 Rh4BG443900 Rh4CG461200 Rh4DG442700
rosa_wichuraiana	Rw1G012330 Rw1G015050 Rw4G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	768
AccB1I	GGYRCC	1 cut(s)	768
AccB7I	CCANNNNNTGG	2 cut(s)	369, 1439
AccI	GTMKAC	1 cut(s)	693
AccII	CGCG	2 cut(s)	422, 620
AciI	CCGC	6 cut(s)	492, 558, 909, 974, 1035, 1222
AclWI	GGATC	3 cut(s)	12, 783, 807
AcoI	YGGCCR	2 cut(s)	477, 1071
AcsI	RAATTY	2 cut(s)	580, 818
AdeI	CACNNNGTG	1 cut(s)	986
AfaI	GTAC	3 cut(s)	10, 770, 1295
AfiI	CCNNNNNNNGG	5 cut(s)	328, 369, 683, 928, 1439
AgsI	TTSAA	6 cut(s)	499, 567, 577, 1022, 1309, 1400
AhlI	ACTAGT	1 cut(s)	1435
AjnI	CCWGG	3 cut(s)	517, 771, 1007
AleI	CACNNNNGTG	2 cut(s)	350, 968
AluBI	AGCT	6 cut(s)	157, 259, 343, 563, 607, 628
AluI	AGCT	6 cut(s)	157, 259, 343, 563, 607, 628
Alw21I	GWGCWC	2 cut(s)	345, 417
Alw26I	GTCTC	2 cut(s)	108, 240
AlwI	GGATC	3 cut(s)	12, 783, 807
AoxI	GGCC	4 cut(s)	464, 477, 906, 1071
ApoI	RAATTY	2 cut(s)	580, 818
Asp718I	GGTACC	1 cut(s)	768
AspLEI	GCGC	4 cut(s)	203, 397, 424, 848
AspS9I	GGNCC	2 cut(s)	906, 1430
AsuC2I	CCSGG	2 cut(s)	654, 984
AsuHPI	GGTGA	3 cut(s)	443, 641, 1418
AvaII	GGWCC	1 cut(s)	1430
AxyI	CCTNAGG	1 cut(s)	408
BalI	TGGCCA	2 cut(s)	479, 1073
BanI	GGYRCC	1 cut(s)	768
BanII	GRGCYC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	943
BbsI	GAAGAC	2 cut(s)	477, 801
Bbv12I	GWGCWC	2 cut(s)	345, 417
BccI	CCATC	3 cut(s)	307, 371, 1364
BceAI	ACGGC	1 cut(s)	214
BcgI	CGANNNNNNTGC	4 cut(s)	515, 527, 549, 561
BciT130I	CCWGG	3 cut(s)	519, 773, 1009
BciVI	GTATCC	1 cut(s)	224
BclI	TGATCA	1 cut(s)	387
BcnI	CCSGG	2 cut(s)	654, 984
BcoDI	GTCTC	2 cut(s)	108, 240
BcuI	ACTAGT	1 cut(s)	1435
BfaI	CTAG	2 cut(s)	260, 1436
BfmI	CTRYAG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	852
Bme1390I	CCNGG	5 cut(s)	519, 654, 773, 984, 1009
Bme18I	GGWCC	1 cut(s)	1430
BmgT120I	GGNCC	2 cut(s)	906, 1430
BmiI	GGNNCC	3 cut(s)	302, 523, 770
BmrFI	CCNGG	5 cut(s)	519, 654, 773, 984, 1009
BmsI	GCATC	5 cut(s)	196, 229, 406, 681, 1250
BpiI	GAAGAC	2 cut(s)	477, 801
BplI	GAGNNNNNCTC	2 cut(s)	237, 269
BpuEI	CTTGAG	2 cut(s)	239, 311
BpuMI	CCSGG	2 cut(s)	654, 984
Bsa29I	ATCGAT	1 cut(s)	1253
BsaAI	YACGTR	1 cut(s)	1027
BsaJI	CCNNGG	3 cut(s)	448, 652, 1008
BsaXI	ACNNNNNCTCC	2 cut(s)	1335, 1365
Bsc4I	CCNNNNNNNGG	5 cut(s)	328, 369, 683, 928, 1439
Bse1I	ACTGG	3 cut(s)	16, 699, 1274
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	176
BseBI	CCWGG	3 cut(s)	519, 773, 1009
BseCI	ATCGAT	1 cut(s)	1253
BseDI	CCNNGG	3 cut(s)	448, 652, 1008
BseGI	GGATG	6 cut(s)	397, 458, 514, 599, 672, 835
BseLI	CCNNNNNNNGG	5 cut(s)	328, 369, 683, 928, 1439
BseMI	GCAATG	1 cut(s)	176
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	3 cut(s)	16, 699, 1274
BseRI	GAGGAG	2 cut(s)	944, 1251
BsgI	GTGCAG	1 cut(s)	171
Bsh1236I	CGCG	2 cut(s)	422, 620
BshFI	GGCC	4 cut(s)	466, 479, 908, 1073
BshNI	GGYRCC	1 cut(s)	768
BshVI	ATCGAT	1 cut(s)	1253
BsiHKAI	GWGCWC	2 cut(s)	345, 417
BsiSI	CCGG	6 cut(s)	143, 243, 467, 654, 684, 984
BslI	CCNNNNNNNGG	5 cut(s)	328, 369, 683, 928, 1439
BsmAI	GTCTC	2 cut(s)	108, 240
BsmI	GAATGC	3 cut(s)	275, 948, 1133
BsnI	GGCC	4 cut(s)	466, 479, 908, 1073
Bsp1286I	GDGCHC	2 cut(s)	345, 417
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	6 cut(s)	492, 558, 909, 974, 1035, 1222
BspANI	GGCC	4 cut(s)	466, 479, 908, 1073
BspCNI	CTCAG	1 cut(s)	400
BspDI	ATCGAT	1 cut(s)	1253
BspFNI	CGCG	2 cut(s)	422, 620
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	3 cut(s)	302, 523, 770
BspMAI	CTGCAG	1 cut(s)	162
BspPI	GGATC	3 cut(s)	12, 783, 807
BspT107I	GGYRCC	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	176
BsrI	ACTGG	3 cut(s)	16, 699, 1274
BssECI	CCNNGG	3 cut(s)	448, 652, 1008
BssSI	CACGAG	1 cut(s)	943
BssT1I	CCWWGG	1 cut(s)	448
Bst2BI	CACGAG	1 cut(s)	943
Bst2UI	CCWGG	3 cut(s)	519, 773, 1009
Bst4CI	ACNGT	2 cut(s)	723, 1097
BstAPI	GCANNNNNTGC	1 cut(s)	166
BstBAI	YACGTR	1 cut(s)	1027
BstC8I	GCNNGC	6 cut(s)	360, 618, 643, 789, 913, 1105
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	6 cut(s)	397, 458, 514, 599, 672, 835
BstFNI	CGCG	2 cut(s)	422, 620
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	4 cut(s)	203, 397, 424, 848
BstMAI	GTCTC	2 cut(s)	108, 240
BstNI	CCWGG	3 cut(s)	519, 773, 1009
BstNSI	RCATGY	4 cut(s)	362, 645, 915, 1284
BstSCI	CCNGG	5 cut(s)	517, 652, 771, 982, 1007
BstSFI	CTRYAG	1 cut(s)	158
BstSNI	TACGTA	1 cut(s)	1027
BstUI	CGCG	2 cut(s)	422, 620
BstV2I	GAAGAC	2 cut(s)	477, 801
BstX2I	RGATCY	2 cut(s)	812, 852
BstXI	CCANNNNNNTGG	2 cut(s)	518, 1069
BstYI	RGATCY	2 cut(s)	812, 852
Bsu15I	ATCGAT	1 cut(s)	1253
Bsu36I	CCTNAGG	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	224
BsuRI	GGCC	4 cut(s)	466, 479, 908, 1073
BsuTUI	ATCGAT	1 cut(s)	1253
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	6 cut(s)	397, 458, 514, 599, 672, 835
BtsIMutI	CAGTG	1 cut(s)	1281
Cac8I	GCNNGC	6 cut(s)	360, 618, 643, 789, 913, 1105
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	4 cut(s)	203, 397, 424, 848
Cfr13I	GGNCC	2 cut(s)	906, 1430
ClaI	ATCGAT	1 cut(s)	1253
Csp6I	GTAC	3 cut(s)	9, 769, 1294
CviQI	GTAC	3 cut(s)	9, 769, 1294
DdeI	CTNAG	1 cut(s)	408
DraIII	CACNNNGTG	1 cut(s)	986
EaeI	YGGCCR	2 cut(s)	477, 1071
Ecl136II	GAGCTC	1 cut(s)	343
Eco105I	TACGTA	1 cut(s)	1027
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	1430
Eco53kI	GAGCTC	1 cut(s)	343
Eco81I	CCTNAGG	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	343
EcoRI	GAATTC	2 cut(s)	580, 818
EcoRII	CCWGG	3 cut(s)	517, 771, 1007
EcoT14I	CCWWGG	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	448
FauNDI	CATATG	1 cut(s)	938
FbaI	TGATCA	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	693
FokI	GGATG	6 cut(s)	384, 465, 501, 586, 659, 842
FriOI	GRGCYC	1 cut(s)	345
FspBI	CTAG	2 cut(s)	260, 1436
GlaI	GCGC	4 cut(s)	202, 396, 423, 847
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	4 cut(s)	466, 479, 908, 1073
HapII	CCGG	6 cut(s)	143, 243, 467, 654, 684, 984
HhaI	GCGC	4 cut(s)	203, 397, 424, 848
Hin6I	GCGC	4 cut(s)	201, 395, 422, 846
HinP1I	GCGC	4 cut(s)	201, 395, 422, 846
HincII	GTYRAC	1 cut(s)	125
HindII	GTYRAC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	6 cut(s)	182, 440, 1225, 1265, 1324, 1354
HpaII	CCGG	6 cut(s)	143, 243, 467, 654, 684, 984
HphI	GGTGA	3 cut(s)	443, 641, 1418
Hpy166II	GTNNAC	3 cut(s)	125, 694, 1409
Hpy188I	TCNGA	7 cut(s)	445, 526, 586, 817, 954, 1123, 1381
Hpy188III	TCNNGA	8 cut(s)	132, 499, 577, 665, 713, 856, 1258, 1351
Hpy8I	GTNNAC	3 cut(s)	125, 694, 1409
HpyAV	CCTTC	5 cut(s)	505, 687, 1051, 1128, 1255
HpyCH4III	ACNGT	2 cut(s)	723, 1097
HpyCH4IV	ACGT	4 cut(s)	780, 798, 840, 1026
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	4 cut(s)	780, 798, 840, 1026
HspAI	GCGC	4 cut(s)	201, 395, 422, 846
KpnI	GGTACC	1 cut(s)	772
Ksp22I	TGATCA	1 cut(s)	387
LmnI	GCTCC	4 cut(s)	300, 527, 1238, 1343
LweI	GCATC	5 cut(s)	196, 229, 406, 681, 1250
MaeI	CTAG	2 cut(s)	260, 1436
MaeII	ACGT	4 cut(s)	780, 798, 840, 1026
MaeIII	GTNAC	2 cut(s)	1187, 1276
MboII	GAAGA	2 cut(s)	482, 806
MflI	RGATCY	2 cut(s)	812, 852
MhlI	GDGCHC	2 cut(s)	345, 417
MlsI	TGGCCA	2 cut(s)	479, 1073
MluCI	AATT	6 cut(s)	63, 213, 580, 818, 1063, 1393
MluNI	TGGCCA	2 cut(s)	479, 1073
MlyI	GAGTC	2 cut(s)	1259, 1363
MmeI	TCCRAC	2 cut(s)	468, 1177
Mox20I	TGGCCA	2 cut(s)	479, 1073
MscI	TGGCCA	2 cut(s)	479, 1073
MseI	TTAA	1 cut(s)	1462
MslI	CAYNNNNRTG	2 cut(s)	350, 968
Msp20I	TGGCCA	2 cut(s)	479, 1073
MspA1I	CMGCKG	1 cut(s)	1222
MspI	CCGG	6 cut(s)	143, 243, 467, 654, 684, 984
MspR9I	CCNGG	5 cut(s)	519, 654, 773, 984, 1009
Mva1269I	GAATGC	3 cut(s)	275, 948, 1133
MvaI	CCWGG	3 cut(s)	519, 773, 1009
MvnI	CGCG	2 cut(s)	422, 620
NciI	CCSGG	2 cut(s)	654, 984
NcoI	CCATGG	1 cut(s)	448
NdeI	CATATG	1 cut(s)	938
NlaIV	GGNNCC	3 cut(s)	302, 523, 770
NmuCI	GTSAC	1 cut(s)	1276
NspI	RCATGY	4 cut(s)	362, 645, 915, 1284
OliI	CACNNNNGTG	2 cut(s)	350, 968
PaeI	GCATGC	3 cut(s)	362, 645, 915
PagI	TCATGA	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PctI	GAATGC	3 cut(s)	275, 948, 1133
PfeI	GAWTC	4 cut(s)	182, 440, 1225, 1324
PflMI	CCANNNNNTGG	2 cut(s)	369, 1439
PleI	GAGTC	2 cut(s)	1259, 1362
PpsI	GAGTC	2 cut(s)	1259, 1362
Ppu21I	YACGTR	1 cut(s)	1027
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	3 cut(s)	517, 771, 1007
PspGI	CCWGG	3 cut(s)	517, 771, 1007
PspN4I	GGNNCC	3 cut(s)	302, 523, 770
PspPI	GGNCC	2 cut(s)	906, 1430
PstI	CTGCAG	1 cut(s)	162
PsuI	RGATCY	2 cut(s)	812, 852
RsaI	GTAC	3 cut(s)	10, 770, 1295
RsaNI	GTAC	3 cut(s)	9, 769, 1294
RseI	CAYNNNNRTG	2 cut(s)	350, 968
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	1462
Sau96I	GGNCC	2 cut(s)	906, 1430
SchI	GAGTC	2 cut(s)	1259, 1363
ScrFI	CCNGG	5 cut(s)	519, 654, 773, 984, 1009
SduI	GDGCHC	2 cut(s)	345, 417
SfaNI	GCATC	5 cut(s)	196, 229, 406, 681, 1250
SfcI	CTRYAG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	1430
SmiMI	CAYNNNNRTG	2 cut(s)	350, 968
SmlI	CTYRAG	2 cut(s)	254, 326
SmoI	CTYRAG	2 cut(s)	254, 326
SnaBI	TACGTA	1 cut(s)	1027
SpeI	ACTAGT	1 cut(s)	1435
SphI	GCATGC	3 cut(s)	362, 645, 915
Sse9I	AATT	6 cut(s)	63, 213, 580, 818, 1063, 1393
SsiI	CCGC	6 cut(s)	492, 558, 909, 974, 1035, 1222
SspMI	CTAG	2 cut(s)	260, 1436
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	5 cut(s)	517, 652, 771, 982, 1007
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	2 cut(s)	723, 1097
TaiI	ACGT	4 cut(s)	783, 801, 843, 1029
TaqI	TCGA	2 cut(s)	1253, 1268
TasI	AATT	6 cut(s)	63, 213, 580, 818, 1063, 1393
TauI	GCSGC	3 cut(s)	560, 911, 976
TfiI	GAWTC	4 cut(s)	182, 440, 1225, 1324
Tru1I	TTAA	1 cut(s)	1462
Tru9I	TTAA	1 cut(s)	1462
TscAI	CASTG	1 cut(s)	1281
TseFI	GTSAC	1 cut(s)	1276
Tsp45I	GTSAC	1 cut(s)	1276
TspDTI	ATGAA	7 cut(s)	47, 732, 774, 925, 1217, 1377, 1398
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	1281
Van91I	CCANNNNNTGG	2 cut(s)	369, 1439
VpaK11BI	GGWCC	1 cut(s)	1430
XapI	RAATTY	2 cut(s)	580, 818
XceI	RCATGY	4 cut(s)	362, 645, 915, 1284
XmiI	GTMKAC	1 cut(s)	693
XspI	CTAG	2 cut(s)	260, 1436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.