RchiOBHm_Chr1g0340181

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003358
Physical Location & Seq
Forward (+)
31731351 .. 31732783
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56699

Sequence Viewer

Length: 888 bp
ATGTTAATCGACAGTGGGGTGAACCTAAGAATTGTTCAAACCAATCACATCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTGTGGTCAAAATTCCAAAATTGTGCTATTTTTTTTTTTTGTCGATCAGGATGAATTATTGTGGGCTGCAGCATGGCTTCATCGTGCTACTGATGATAAATCGTACCTAGATTACCTTGGTCAAGCAGGCAATACTGGTGGTGCAAGAACCGAGTTCTCTTGGGATGACAAGTTTGTTGGCGCCCAGGTCTTGGTTGCAAAGCTTGTCTTGGAGGGCAAGGTACCGGCTGATTCAGGACCGTGGTCACAATACAAAAACCAGGCAGAGCAGTTCATTTGCTCTTGCATTCAGAAGGGTAACAGCAACGTGAAGAAGACGCCCGGTGGGTTGTTATGGTTTTTGCCATTTAACAATCTTCAGTATACTACAACTGCTACACTCATTGCAACTGTTTACTCTGAATACCTATCCCCAAAACGTGCCTCCATTCAATGTAGTGGTGGCATTGTTCAGTCTTCTGCTCTACTTGACTTGGCCCGATCACAGGTGGACTATATCCTGGGTTCAAATCCTAATGGTATGAGCTACATGGTTGGATTTGGGTCAAAGTATCCAACTCAAGTTCATCATAGAGGAGCATCCATTGTTTCAATCAAGAAAGATCCATCTCCAGTTGCATGCCAAGCTGGCTTCGACGCTTGGTTTAACATGAACGCCCCTAATCCGAATGTATTGGATGGAGCAATAGTTGGAGGACCCAATGATAGTGATGGTTATACGGATTCAAGATCCAACTTCCAAATGGCTGAAGCAGCAACTGTTAATACTGCACCACTAGTTGGTGTCCTAGCCAAGCTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

295

Amino Acids

32.34

Weight (kDa)

6.07

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 43 - 291 3.4e-68 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 2 cut(s) 263, 304
AccB7I CCANNNNNTGG 2 cut(s) 274, 863
AccI GTMKAC 1 cut(s) 446
AclWI GGATC 2 cut(s) 680, 807
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 2 cut(s) 425, 852
AcyI GRCGYC 2 cut(s) 264, 401
AfaI GTAC 2 cut(s) 188, 306
AfiI CCNNNNNNNGG 3 cut(s) 274, 568, 863
AgsI TTSAA 5 cut(s) 38, 515, 591, 675, 810
AhlI ACTAGT 1 cut(s) 859
AjnI CCWGG 3 cut(s) 267, 342, 582
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 4 cut(s) 286, 609, 710, 880
AluI AGCT 4 cut(s) 286, 609, 710, 880
AlwI GGATC 2 cut(s) 680, 807
AlwNI CAGNNNCTG 1 cut(s) 842
AoxI GGCC 1 cut(s) 558
ApeKI GCWGC 3 cut(s) 149, 152, 836
ApoI RAATTY 1 cut(s) 94
Asp718I GGTACC 1 cut(s) 304
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 3 cut(s) 320, 559, 779
AsuC2I CCSGG 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 2 cut(s) 320, 779
BanI GGYRCC 2 cut(s) 263, 304
BbsI GAAGAC 2 cut(s) 404, 531
BbvI GCAGC 3 cut(s) 136, 164, 848
BccI CCATC 3 cut(s) 697, 755, 788
BciT130I CCWGG 3 cut(s) 269, 344, 584
BciVI GTATCC 1 cut(s) 645
BcnI CCSGG 1 cut(s) 405
BcuI ACTAGT 1 cut(s) 859
BfaI CTAG 3 cut(s) 191, 860, 872
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 267
BfuI GTATCC 1 cut(s) 645
BglI GCCNNNNNGGC 1 cut(s) 711
BisI GCNGC 3 cut(s) 150, 153, 837
BlsI GCNGC 3 cut(s) 151, 154, 838
Bme1390I CCNGG 4 cut(s) 269, 344, 405, 584
Bme18I GGWCC 2 cut(s) 320, 779
BmgT120I GGNCC 3 cut(s) 320, 559, 779
BmiI GGNNCC 3 cut(s) 265, 306, 781
BmrFI CCNGG 4 cut(s) 269, 344, 405, 584
BmsI GCATC 1 cut(s) 671
BoxI GACNNNNGTC 1 cut(s) 325
BpiI GAAGAC 2 cut(s) 404, 531
BpmI CTGGAG 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 627
BpuMI CCSGG 1 cut(s) 405
BsaHI GRCGYC 2 cut(s) 264, 401
BsaJI CCNNGG 4 cut(s) 199, 267, 323, 583
BsaXI ACNNNNNCTCC 2 cut(s) 756, 786
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 568, 863
Bse118I RCCGGY 1 cut(s) 307
Bse1I ACTGG 2 cut(s) 223, 695
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 3 cut(s) 269, 344, 584
BseDI CCNNGG 4 cut(s) 199, 267, 323, 583
BseGI GGATG 4 cut(s) 139, 253, 662, 766
BseLI CCNNNNNNNGG 3 cut(s) 274, 568, 863
BseMI GCAATG 1 cut(s) 465
BseNI ACTGG 2 cut(s) 223, 695
BseRI GAGGAG 1 cut(s) 672
BseXI GCAGC 3 cut(s) 136, 164, 848
BsgI GTGCAG 1 cut(s) 837
BshFI GGCC 1 cut(s) 560
BshNI GGYRCC 2 cut(s) 263, 304
BsiSI CCGG 2 cut(s) 308, 405
BslI CCNNNNNNNGG 3 cut(s) 274, 568, 863
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 1 cut(s) 560
Bsp143I GATC 4 cut(s) 127, 563, 685, 812
BspANI GGCC 1 cut(s) 560
BspLI GGNNCC 3 cut(s) 265, 306, 781
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 2 cut(s) 680, 807
BspT107I GGYRCC 2 cut(s) 263, 304
BsrDI GCAATG 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 307
BsrI ACTGG 2 cut(s) 223, 695
BssAI RCCGGY 1 cut(s) 307
BssECI CCNNGG 4 cut(s) 199, 267, 323, 583
BssMI GATC 4 cut(s) 127, 563, 685, 812
BssNAI GTATAC 1 cut(s) 447
BssNI GRCGYC 2 cut(s) 264, 401
BssT1I CCWWGG 1 cut(s) 199
Bst1107I GTATAC 1 cut(s) 447
Bst2UI CCWGG 3 cut(s) 269, 344, 584
Bst4CI ACNGT 4 cut(s) 14, 324, 475, 844
BstACI GRCGYC 2 cut(s) 264, 401
BstC8I GCNNGC 4 cut(s) 211, 703, 712, 882
BstDEI CTNAG 1 cut(s) 26
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 4 cut(s) 139, 253, 662, 766
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 4 cut(s) 130, 566, 688, 815
BstMBI GATC 4 cut(s) 127, 563, 685, 812
BstMWI GCNNNNNNNGC 4 cut(s) 707, 711, 836, 881
BstNI CCWGG 3 cut(s) 269, 344, 584
BstNSI RCATGY 1 cut(s) 705
BstPAI GACNNNNGTC 1 cut(s) 325
BstSCI CCNGG 4 cut(s) 267, 342, 403, 582
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 3 cut(s) 136, 164, 848
BstV2I GAAGAC 2 cut(s) 404, 531
BstX2I RGATCY 2 cut(s) 685, 812
BstYI RGATCY 2 cut(s) 685, 812
BstZ17I GTATAC 1 cut(s) 447
BsuI GTATCC 1 cut(s) 645
BsuRI GGCC 1 cut(s) 560
BtgI CCRYGG 1 cut(s) 323
BtsCI GGATG 4 cut(s) 139, 253, 662, 766
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 4 cut(s) 211, 703, 712, 882
CaiI CAGNNNCTG 1 cut(s) 842
CfoI GCGC 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 307
Cfr13I GGNCC 3 cut(s) 320, 559, 779
CseI GACGC 2 cut(s) 409, 728
Csp6I GTAC 2 cut(s) 187, 305
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 4 cut(s) 156, 613, 702, 733
CviQI GTAC 2 cut(s) 187, 305
DdeI CTNAG 1 cut(s) 26
DinI GGCGCC 1 cut(s) 265
DpnI GATC 4 cut(s) 129, 565, 687, 814
DpnII GATC 4 cut(s) 127, 563, 685, 812
Eco130I CCWWGG 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 320, 779
Eco57I CTGAAG 2 cut(s) 425, 852
EcoO109I RGGNCCY 1 cut(s) 779
EcoRII CCWGG 3 cut(s) 267, 342, 582
EcoT14I CCWWGG 1 cut(s) 199
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 4 cut(s) 159, 616, 705, 736
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 4 cut(s) 155, 612, 701, 732
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 3 cut(s) 150, 153, 837
FokI GGATG 4 cut(s) 146, 260, 649, 773
Fsp4HI GCNGC 3 cut(s) 150, 153, 837
FspBI CTAG 3 cut(s) 191, 860, 872
GlaI GCGC 1 cut(s) 265
GluI GCNGC 3 cut(s) 150, 153, 837
GsuI CTGGAG 1 cut(s) 678
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 1 cut(s) 560
HapII CCGG 2 cut(s) 308, 405
HgaI GACGC 2 cut(s) 409, 728
HhaI GCGC 1 cut(s) 266
Hin1I GRCGYC 2 cut(s) 264, 401
Hin1II CATG 4 cut(s) 159, 616, 705, 736
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HindIII AAGCTT 2 cut(s) 284, 878
HinfI GANTC 2 cut(s) 314, 806
HpaII CCGG 2 cut(s) 308, 405
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 4 cut(s) 22, 447, 478, 574
Hpy188I TCNGA 3 cut(s) 375, 484, 750
Hpy188III TCNNGA 4 cut(s) 131, 318, 679, 810
Hpy8I GTNNAC 4 cut(s) 22, 447, 478, 574
Hpy99I CGWCG 1 cut(s) 722
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 4 cut(s) 14, 324, 475, 844
HpyCH4IV ACGT 2 cut(s) 390, 502
HpyCH4V TGCA 7 cut(s) 152, 227, 281, 369, 470, 701, 854
HpyF10VI GCNNNNNNNGC 4 cut(s) 707, 711, 836, 881
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 2 cut(s) 390, 502
Hsp92I GRCGYC 2 cut(s) 264, 401
Hsp92II CATG 4 cut(s) 159, 616, 705, 736
HspAI GCGC 1 cut(s) 264
KasI GGCGCC 1 cut(s) 263
KpnI GGTACC 1 cut(s) 308
Kzo9I GATC 4 cut(s) 127, 563, 685, 812
LmnI GCTCC 2 cut(s) 659, 764
Lsp1109I GCAGC 3 cut(s) 136, 164, 848
LweI GCATC 1 cut(s) 671
MaeI CTAG 3 cut(s) 191, 860, 872
MaeII ACGT 2 cut(s) 390, 502
MaeIII GTNAC 2 cut(s) 327, 380
MalI GATC 4 cut(s) 129, 565, 687, 814
MboI GATC 4 cut(s) 127, 563, 685, 812
MboII GAAGA 8 cut(s) 43, 46, 49, 52, 406, 409, 431, 531
MflI RGATCY 2 cut(s) 685, 812
MluCI AATT 4 cut(s) 30, 94, 102, 137
Mly113I GGCGCC 1 cut(s) 264
MmeI TCCRAC 4 cut(s) 598, 662, 754, 840
MnlI CCTC 4 cut(s) 289, 517, 650, 770
MseI TTAA 4 cut(s) 5, 432, 729, 846
MspI CCGG 2 cut(s) 308, 405
MspR9I CCNGG 4 cut(s) 269, 344, 405, 584
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 3 cut(s) 269, 344, 584
MwoI GCNNNNNNNGC 4 cut(s) 707, 711, 836, 881
NarI GGCGCC 1 cut(s) 264
NciI CCSGG 1 cut(s) 405
NdeII GATC 4 cut(s) 127, 563, 685, 812
NlaIII CATG 4 cut(s) 159, 616, 705, 736
NlaIV GGNNCC 3 cut(s) 265, 306, 781
NmuCI GTSAC 1 cut(s) 327
NspI RCATGY 1 cut(s) 705
PaeI GCATGC 1 cut(s) 705
PctI GAATGC 1 cut(s) 369
PfeI GAWTC 2 cut(s) 314, 806
PflMI CCANNNNNTGG 2 cut(s) 274, 863
PkrI GCNGC 3 cut(s) 151, 154, 838
PluTI GGCGCC 1 cut(s) 267
PpuMI RGGWCCY 1 cut(s) 779
PshAI GACNNNNGTC 1 cut(s) 325
Psp5II RGGWCCY 1 cut(s) 779
Psp6I CCWGG 3 cut(s) 267, 342, 582
PspGI CCWGG 3 cut(s) 267, 342, 582
PspN4I GGNNCC 3 cut(s) 265, 306, 781
PspPI GGNCC 3 cut(s) 320, 559, 779
PspPPI RGGWCCY 1 cut(s) 779
PstI CTGCAG 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 842
PsuI RGATCY 2 cut(s) 685, 812
RsaI GTAC 2 cut(s) 188, 306
RsaNI GTAC 2 cut(s) 187, 305
SaqAI TTAA 4 cut(s) 5, 432, 729, 846
SatI GCNGC 3 cut(s) 150, 153, 837
Sau3AI GATC 4 cut(s) 127, 563, 685, 812
Sau96I GGNCC 3 cut(s) 320, 559, 779
ScrFI CCNGG 4 cut(s) 269, 344, 405, 584
SfaNI GCATC 1 cut(s) 671
SfcI CTRYAG 1 cut(s) 150
SfoI GGCGCC 1 cut(s) 265
SinI GGWCC 2 cut(s) 320, 779
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
SpeI ACTAGT 1 cut(s) 859
SphI GCATGC 1 cut(s) 705
Sse9I AATT 4 cut(s) 30, 94, 102, 137
SspDI GGCGCC 1 cut(s) 263
SspMI CTAG 3 cut(s) 191, 860, 872
StyD4I CCNGG 4 cut(s) 267, 342, 403, 582
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 4 cut(s) 14, 324, 475, 844
TaiI ACGT 2 cut(s) 393, 505
TaqI TCGA 3 cut(s) 9, 126, 717
TasI AATT 4 cut(s) 30, 94, 102, 137
TfiI GAWTC 2 cut(s) 314, 806
Tru1I TTAA 4 cut(s) 5, 432, 729, 846
Tru9I TTAA 4 cut(s) 5, 432, 729, 846
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 327
TseI GCWGC 3 cut(s) 149, 152, 836
Tsp45I GTSAC 1 cut(s) 327
TspDTI ATGAA 5 cut(s) 150, 152, 346, 638, 749
TspGWI ACGGA 1 cut(s) 818
TspRI CASTG 1 cut(s) 19
Van91I CCANNNNNTGG 2 cut(s) 274, 863
VpaK11BI GGWCC 2 cut(s) 320, 779
XapI RAATTY 1 cut(s) 94
XceI RCATGY 1 cut(s) 705
XcmI CCANNNNNNNNNTGG 1 cut(s) 823
XmiI GTMKAC 1 cut(s) 446
XspI CTAG 3 cut(s) 191, 860, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.