Prupe.5G155300_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0002691
Physical Location & Seq
Forward (+)
13892017 .. 13893525
1509 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G155300.1

Sequence Viewer

Length: 402 bp
ATGGGATTCGTAAAGGTTGTCAACCCGGTGTGTAGTAAGATTTCTAATATGATTAGAACGGAAAATGACTGTGCTGTTCCTGTGGTAAAATCTGAACCTGTTGATCCAGTCATAACCTTGCCAATCTCATGCAGTTTCTCCTGTCAGGAGTTGCCAATGGGGTTGCCAATACGCATGACCTATAGAGGAAGGCCTAAAACAGATAGGAGAGTAGTTTACCTTCGAGACCCATTAATGAGATTGTGGCCAGTCCTCTACATTGAAAGAAATTACTTCAAAACATTGGCAAGCGGTTGGGAAGCTTTCAGCAAGGCAAACAACATTCAACCAGGAGATGGGTGTGTTATTGGGATTGAAAATGGAGTCGAACGCATATGTCCCATCCAGATAATTAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.06

Weight (kDa)

9.17

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 335
AciI CCGC 1 cut(s) 291
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 4 cut(s) 263, 277, 326, 356
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 98
AoxI GGCC 2 cut(s) 191, 245
AseI ATTAAT 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 26
BalI TGGCCA 1 cut(s) 247
BarI GAAGNNNNNNTAC 2 cut(s) 204, 236
BccI CCATC 2 cut(s) 329, 389
BciT130I CCWGG 1 cut(s) 330
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 26, 330
BmrFI CCNGG 2 cut(s) 26, 330
BpuMI CCSGG 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse1I ACTGG 2 cut(s) 107, 248
BseBI CCWGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 335
BseNI ACTGG 2 cut(s) 107, 248
BshFI GGCC 2 cut(s) 193, 247
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 363
BsnI GGCC 2 cut(s) 193, 247
Bso31I GGTCTC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 1 cut(s) 291
BspANI GGCC 2 cut(s) 193, 247
BspPI GGATC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 219
BsrI ACTGG 2 cut(s) 107, 248
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 289
BstF5I GGATG 1 cut(s) 381
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 24, 328
BstSFI CTRYAG 1 cut(s) 181
BsuRI GGCC 2 cut(s) 193, 247
BtsCI GGATG 1 cut(s) 381
Cac8I GCNNGC 1 cut(s) 289
CviAII CATG 2 cut(s) 129, 175
CviJI RGCY 3 cut(s) 193, 247, 302
CviKI_1 RGCY 3 cut(s) 193, 247, 302
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 245
Eco147I AGGCCT 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 328
FaeI CATG 2 cut(s) 132, 178
FaiI YATR 7 cut(s) 50, 113, 130, 176, 183, 374, 376
FaqI GGGAC 1 cut(s) 363
FatI CATG 2 cut(s) 128, 174
FauNDI CATATG 1 cut(s) 374
FokI GGATG 1 cut(s) 368
HaeIII GGCC 2 cut(s) 193, 247
HapII CCGG 1 cut(s) 26
Hin1II CATG 2 cut(s) 132, 178
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 2 cut(s) 6, 363
HpaII CCGG 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 22, 217
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 3 cut(s) 146, 224, 385
Hpy8I GTNNAC 2 cut(s) 22, 217
HpyAV CCTTC 2 cut(s) 183, 230
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 132
Hsp92II CATG 2 cut(s) 132, 178
Kzo9I GATC 1 cut(s) 103
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MlsI TGGCCA 1 cut(s) 247
MluCI AATT 2 cut(s) 268, 390
MluNI TGGCCA 1 cut(s) 247
MlyI GAGTC 1 cut(s) 372
MnlI CCTC 2 cut(s) 179, 263
Mox20I TGGCCA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 247
MseI TTAA 1 cut(s) 233
Msp20I TGGCCA 1 cut(s) 247
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 26, 330
MvaI CCWGG 1 cut(s) 330
NciI CCSGG 1 cut(s) 26
NdeI CATATG 1 cut(s) 374
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 132, 178
PceI AGGCCT 1 cut(s) 193
PfeI GAWTC 1 cut(s) 6
PflMI CCANNNNNTGG 1 cut(s) 335
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PshBI ATTAAT 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
SaqAI TTAA 1 cut(s) 233
Sau3AI GATC 1 cut(s) 103
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 2 cut(s) 26, 330
SetI ASST 6 cut(s) 18, 100, 119, 182, 222, 304
SfcI CTRYAG 1 cut(s) 181
Sse9I AATT 2 cut(s) 268, 390
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 1 cut(s) 291
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 2 cut(s) 24, 328
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 223, 366
TasI AATT 2 cut(s) 268, 390
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 74
Van91I CCANNNNNTGG 1 cut(s) 335
VspI ATTAAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.