Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002691

Physical Location & Seq

Genomic Coordinates Reverse (-)

63258433 .. 63263076

Gene Structure 4644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G038310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGTAACTAACAATCCAAGAAAGACGAGGTTGAAGGTGTCTGGTGGTGTAACAATATTCATCCAAACAGGAACAGAGATGGGTCACGAATTCAACGCTTGTGTGGAATGCACTGAGAAGTGTTTGCTGGTTCATGGGAACAAGAGTGATGCTTCACCTGTCATAACTTCCTTTGTCACAGTCATGTCTGGAAACGAGTTTTCTAAATTTATGGAATTGCCTCCAAATGTTGCTCGTGCTGTGTCTTTGGCTGATCAATCGACTGTCATTGAAGATTCACAGGGGCTGCGATGGAACATTGCAATCTCAAGTATGGATGGCTCCTTTGCTTTTCATCATGGATGGAATGCTTTTTCATTAGATCATGACCTACAACTAGGAAATATTCTGGTCTTCACTTACATTAGGGGTTCACATTTTGCTGTTAAAATCTATGATAACTCTGGGTGTGAGACCGATCAGAAGAAAAGAAAAAGGGATGACAGAGATTCTATTTTCAAAGGTGGTTGGTGCTATGCAACTGATAAAAGTTCAATGAGCAAAGACGGTTCAGGCACCTGTGGTTGCTCAGATGCAGAGATAAGTAAACGGTTGGATGAAGTGAATGGCAAGGGGAAAGCACCAATCACCACACAGTTTGCTTCAAATTGTGATGATAGAAAGGAAGCTGGCTCCGTTAACAGCCCAGTGGCTAAAGATGTAGGGAGTACAGTAAGTCCTTCAGATGGATCCGAGTTGGAAAGGACTCTGAAAAATAGCGATCATGAAGTCAAGACCATCTCTGCTGTGTCAACCAGAGCTACAAAAAAATGCCGCACTGGCGATGGATCAGGAGGTGAGGAAGCTATTTCAAGAGATCAGAGGCTCAAACCCCATCATCCCACTTTTGTTGTCATGATGCAAGAACCCTCCTACCTTACAACTGCTTTGAAAATTGATATAAACTTTGCCCAAAAATATAATTTATCGAGGCGCAATGTTAACCTACAGATTCCAAATGGAAGCACTTGGCCTGTTATTTGCTCTGTCACCAACATAGAAGAAGACGGAATCCGCTACACCAGAGAAGGAGTTGCAAGATACCGCTACCCCAGTTGGTGTATCAGAGAAGAAGTTGCAAGAATCCGCTATCGTGGTTGGATAAAATTTGCAACAGACAATGGGCTGCAAGTAGGGGATACTTGTGTGTTTGAGATGATAAAGCAGCAGCCTGAAATAACGTTCTTAGTTCACATAATCCAAGCTACTTACGCTACTAAGCTCCATTTCAACAATATTTCCCAGAACATGAAGTTACGAAGAATTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

436

Amino Acids

48.55

Weight (kDa)

8.5

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	58 - 147	5.3e-11	B3 DNA binding domain
B3	PF02362	297 - 414	1.6e-08	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07280 FvH4_5g07280 FvH4_5g07280
malus_domestica	MD06G1157600.v1.1
prunus_persica	Prupe.5G155300_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0149271 RchiOBHm_Chr2g0149281 RchiOBHm_Chr7g0191351
rosa_laevigata	RLG00000004463 RLG00000020389
rosa_multiflora	Rmu_sc0004860.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438290 Rroxscaffold_2G00098250 Rroxscaffold_3G00263910
rosa_rugosa	Rorug02G0410000 Rorug02G0410100 Rorug06G0510100
rosa_samantha	Rh2AG471000 Rh2BG483200 Rh2CG456900 Rh2DG492200 Rh7AG117500 Rh7BG119400 Rh7CG122500 Rh7DG120600
rosa_wichuraiana	Rw2G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	554
AciI	CCGC	4 cut(s)	814, 1054, 1084, 1126
AclI	AACGTT	1 cut(s)	1220
AclWI	GGATC	3 cut(s)	723, 736, 835
AcsI	RAATTY	4 cut(s)	89, 206, 1145, 1302
AcuI	CTGAAG	1 cut(s)	705
AfaI	GTAC	1 cut(s)	709
AfiI	CCNNNNNNNGG	1 cut(s)	725
AgsI	TTSAA	9 cut(s)	34, 94, 272, 499, 534, 645, 852, 931, 1270
AluBI	AGCT	5 cut(s)	668, 800, 845, 1244, 1261
AluI	AGCT	5 cut(s)	668, 800, 845, 1244, 1261
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	3 cut(s)	723, 736, 835
AlwNI	CAGNNNCTG	1 cut(s)	286
AoxI	GGCC	1 cut(s)	1010
ApeKI	GCWGC	4 cut(s)	286, 1165, 1204, 1207
ApoI	RAATTY	4 cut(s)	89, 206, 1145, 1302
AspLEI	GCGC	1 cut(s)	975
AsuHPI	GGTGA	4 cut(s)	147, 619, 848, 1021
BaeI	ACNNNNGTAYC	2 cut(s)	1170, 1203
BamHI	GGATCC	1 cut(s)	728
BanI	GGYRCC	1 cut(s)	554
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	2 cut(s)	385, 1050
BbvI	GCAGC	4 cut(s)	273, 1152, 1216, 1219
BccI	CCATC	8 cut(s)	73, 285, 311, 336, 719, 785, 818, 882
BciVI	GTATCC	1 cut(s)	1171
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	986
BfuI	GTATCC	1 cut(s)	1171
BglI	GCCNNNNNGGC	1 cut(s)	819
BisI	GCNGC	5 cut(s)	287, 814, 1166, 1205, 1208
BlsI	GCNGC	5 cut(s)	288, 815, 1167, 1206, 1209
BmiI	GGNNCC	4 cut(s)	322, 556, 673, 730
BmrI	ACTGGG	2 cut(s)	680, 1086
BmsI	GCATC	3 cut(s)	139, 562, 888
BmuI	ACTGGG	2 cut(s)	680, 1086
BpiI	GAAGAC	2 cut(s)	385, 1050
BpuEI	CTTGAG	1 cut(s)	292
BsaI	GGTCTC	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse1I	ACTGG	3 cut(s)	686, 823, 1092
Bse3DI	GCAATG	2 cut(s)	297, 982
BseGI	GGATG	6 cut(s)	60, 322, 347, 484, 601, 877
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMI	GCAATG	2 cut(s)	297, 982
BseMII	CTCAG	2 cut(s)	105, 582
BseNI	ACTGG	3 cut(s)	686, 823, 1092
BseXI	GCAGC	4 cut(s)	273, 1152, 1216, 1219
BshFI	GGCC	1 cut(s)	1012
BshNI	GGYRCC	1 cut(s)	554
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmAI	GTCTC	1 cut(s)	446
BsmI	GAATGC	2 cut(s)	113, 352
BsnI	GGCC	1 cut(s)	1012
Bso31I	GGTCTC	1 cut(s)	446
Bsp143I	GATC	7 cut(s)	253, 361, 457, 728, 760, 827, 856
BspACI	CCGC	4 cut(s)	814, 1054, 1084, 1126
BspANI	GGCC	1 cut(s)	1012
BspCNI	CTCAG	2 cut(s)	106, 581
BspHI	TCATGA	3 cut(s)	364, 763, 894
BspLI	GGNNCC	4 cut(s)	322, 556, 673, 730
BspPI	GGATC	3 cut(s)	723, 736, 835
BspT107I	GGYRCC	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	446
BsrDI	GCAATG	2 cut(s)	297, 982
BsrI	ACTGG	3 cut(s)	686, 823, 1092
BssMI	GATC	7 cut(s)	253, 361, 457, 728, 760, 827, 856
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	6 cut(s)	181, 265, 548, 591, 636, 712
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	5 cut(s)	114, 568, 1225, 1257, 1308
BstF5I	GGATG	6 cut(s)	60, 322, 347, 484, 601, 877
BstHHI	GCGC	1 cut(s)	975
BstKTI	GATC	7 cut(s)	256, 364, 460, 731, 763, 830, 859
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	7 cut(s)	253, 361, 457, 728, 760, 827, 856
BstMWI	GCNNNNNNNGC	2 cut(s)	819, 1250
BstSFI	CTRYAG	1 cut(s)	986
BstV1I	GCAGC	4 cut(s)	273, 1152, 1216, 1219
BstV2I	GAAGAC	2 cut(s)	385, 1050
BstX2I	RGATCY	1 cut(s)	728
BstYI	RGATCY	1 cut(s)	728
BsuI	GTATCC	1 cut(s)	1171
BsuRI	GGCC	1 cut(s)	1012
BtgZI	GCGATG	2 cut(s)	304, 837
BtsCI	GGATG	6 cut(s)	60, 322, 347, 484, 601, 877
BtsIMutI	CAGTG	3 cut(s)	111, 693, 816
Cac8I	GCNNGC	1 cut(s)	670
CaiI	CAGNNNCTG	1 cut(s)	286
CciI	TCATGA	3 cut(s)	364, 763, 894
CfoI	GCGC	1 cut(s)	975
Csp6I	GTAC	1 cut(s)	708
CspCI	CAANNNNNGTGG	4 cut(s)	619, 654, 871, 906
CviAII	CATG	7 cut(s)	134, 184, 338, 365, 764, 895, 1288
CviQI	GTAC	1 cut(s)	708
DdeI	CTNAG	5 cut(s)	114, 568, 1225, 1257, 1308
DpnI	GATC	7 cut(s)	255, 363, 459, 730, 762, 829, 858
DpnII	GATC	7 cut(s)	253, 361, 457, 728, 760, 827, 856
Eco31I	GGTCTC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	705
EcoRI	GAATTC	2 cut(s)	89, 1302
FaeI	CATG	7 cut(s)	137, 187, 341, 368, 767, 898, 1291
FalI	AAGNNNNNCTT	1 cut(s)	1291
FatI	CATG	7 cut(s)	133, 183, 337, 364, 763, 894, 1287
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	5 cut(s)	287, 814, 1166, 1205, 1208
FokI	GGATG	6 cut(s)	47, 329, 354, 491, 608, 864
Fsp4HI	GCNGC	5 cut(s)	287, 814, 1166, 1205, 1208
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	974
GluI	GCNGC	5 cut(s)	287, 814, 1166, 1205, 1208
HaeIII	GGCC	1 cut(s)	1012
HhaI	GCGC	1 cut(s)	975
Hin1II	CATG	7 cut(s)	137, 187, 341, 368, 767, 898, 1291
Hin6I	GCGC	1 cut(s)	973
HinP1I	GCGC	1 cut(s)	973
HincII	GTYRAC	3 cut(s)	679, 792, 982
HindII	GTYRAC	3 cut(s)	679, 792, 982
HinfI	GANTC	6 cut(s)	275, 488, 745, 991, 1050, 1122
HpaI	GTTAAC	2 cut(s)	679, 982
HphI	GGTGA	4 cut(s)	147, 619, 848, 1021
Hpy166II	GTNNAC	6 cut(s)	413, 587, 679, 792, 982, 1231
Hpy188I	TCNGA	7 cut(s)	462, 571, 724, 733, 750, 861, 1106
Hpy188III	TCNNGA	8 cut(s)	86, 189, 365, 764, 772, 831, 852, 895
Hpy8I	GTNNAC	6 cut(s)	413, 587, 679, 792, 982, 1231
HpyAV	CCTTC	3 cut(s)	28, 729, 1061
HpyCH4III	ACNGT	6 cut(s)	181, 265, 548, 591, 636, 712
HpyCH4IV	ACGT	1 cut(s)	1220
HpyCH4V	TGCA	9 cut(s)	111, 302, 518, 575, 901, 1076, 1118, 1151, 1168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	819, 1250
HpyF3I	CTNAG	5 cut(s)	114, 568, 1225, 1257, 1308
HpySE526I	ACGT	1 cut(s)	1220
Hsp92II	CATG	7 cut(s)	137, 187, 341, 368, 767, 898, 1291
HspAI	GCGC	1 cut(s)	973
Ksp22I	TGATCA	1 cut(s)	253
KspAI	GTTAAC	2 cut(s)	679, 982
Kzo9I	GATC	7 cut(s)	253, 361, 457, 728, 760, 827, 856
LmnI	GCTCC	3 cut(s)	326, 677, 1266
Lsp1109I	GCAGC	4 cut(s)	273, 1152, 1216, 1219
LweI	GCATC	3 cut(s)	139, 562, 888
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	1220
MaeIII	GTNAC	6 cut(s)	4, 49, 83, 175, 1027, 1293
MalI	GATC	7 cut(s)	255, 363, 459, 730, 762, 829, 858
MboI	GATC	7 cut(s)	253, 361, 457, 728, 760, 827, 856
MboII	GAAGA	7 cut(s)	284, 385, 475, 1052, 1055, 1121, 1311
MflI	RGATCY	1 cut(s)	728
MluCI	AATT	8 cut(s)	89, 206, 215, 646, 933, 961, 1145, 1302
MlyI	GAGTC	1 cut(s)	739
MmeI	TCCRAC	3 cut(s)	573, 717, 1118
MnlI	CCTC	7 cut(s)	21, 231, 827, 832, 855, 919, 963
MseI	TTAA	3 cut(s)	426, 678, 981
MslI	CAYNNNNRTG	1 cut(s)	182
Mva1269I	GAATGC	2 cut(s)	113, 352
MwoI	GCNNNNNNNGC	2 cut(s)	819, 1250
NdeII	GATC	7 cut(s)	253, 361, 457, 728, 760, 827, 856
NlaIII	CATG	7 cut(s)	137, 187, 341, 368, 767, 898, 1291
NlaIV	GGNNCC	4 cut(s)	322, 556, 673, 730
NmuCI	GTSAC	3 cut(s)	83, 175, 1027
PagI	TCATGA	3 cut(s)	364, 763, 894
PctI	GAATGC	2 cut(s)	113, 352
PfeI	GAWTC	5 cut(s)	275, 488, 991, 1050, 1122
PkrI	GCNGC	5 cut(s)	288, 815, 1167, 1206, 1209
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
Psp1406I	AACGTT	1 cut(s)	1220
PspN4I	GGNNCC	4 cut(s)	322, 556, 673, 730
PstNI	CAGNNNCTG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	728
RsaI	GTAC	1 cut(s)	709
RsaNI	GTAC	1 cut(s)	708
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	426, 678, 981
SatI	GCNGC	5 cut(s)	287, 814, 1166, 1205, 1208
Sau3AI	GATC	7 cut(s)	253, 361, 457, 728, 760, 827, 856
SchI	GAGTC	1 cut(s)	739
SfaNI	GCATC	3 cut(s)	139, 562, 888
SfcI	CTRYAG	1 cut(s)	986
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	8 cut(s)	89, 206, 215, 646, 933, 961, 1145, 1302
SsiI	CCGC	4 cut(s)	814, 1054, 1084, 1126
SspI	AATATT	3 cut(s)	57, 385, 1276
SspMI	CTAG	1 cut(s)	377
TaaI	ACNGT	6 cut(s)	181, 265, 548, 591, 636, 712
TaiI	ACGT	1 cut(s)	1223
TaqI	TCGA	2 cut(s)	260, 968
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	8 cut(s)	89, 206, 215, 646, 933, 961, 1145, 1302
TatI	WGTACW	1 cut(s)	707
TauI	GCSGC	1 cut(s)	816
TfiI	GAWTC	5 cut(s)	275, 488, 991, 1050, 1122
Tru1I	TTAA	3 cut(s)	426, 678, 981
Tru9I	TTAA	3 cut(s)	426, 678, 981
TscAI	CASTG	3 cut(s)	118, 693, 823
TseFI	GTSAC	3 cut(s)	83, 175, 1027
TseI	GCWGC	4 cut(s)	286, 1165, 1204, 1207
Tsp45I	GTSAC	3 cut(s)	83, 175, 1027
TspDTI	ATGAA	7 cut(s)	49, 122, 323, 345, 612, 780, 1304
TspGWI	ACGGA	2 cut(s)	664, 1062
TspRI	CASTG	3 cut(s)	118, 693, 823
XapI	RAATTY	4 cut(s)	89, 206, 1145, 1302
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.