Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002691

Physical Location & Seq

Genomic Coordinates Reverse (-)

68343607 .. 68353615

Gene Structure 10009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG483200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGGAGCAGAATGTTGCGAATTCTTGTGTGGCAGCTGAATTTGGTCATTGCCCCCCTGAGGAGTTATTGGGAGGTATTGAATGTCTGATGACTGAAGTAGTTGTGAATGCTACAAATGTTGTGGAGCAAACTCTGGTCAAGAATATTGTCTTGTCACAAGAAAACAACATCAATTCAAGAAAGACGAGGTTGAAGTTGTCTGGTGGTGTAACAATATTCATCCAAACAGGAACAGAGATGGGTCACGAATTCAAAGCTTGTGTGGAATGCACTGAGAAGTGTTTGCTGGTTCATGGGAATAAGAGTGATGCTTCACCTGTCATAACTTCCTTTGTCACAGTCATGTCTGGAAACGAGTTTTCTAAATTTATGGAATTGCCTCCAAATGTTGCTCGTGCTGTGTCTTTGGCTGATCAATCGACTGTCATTGAAGATTCACAGGGGCTGCGATGGAACATTGCAATCTCAAGTATGGATGGCTCCTTTGCTTTTCATCATGGATGGAATGCTTTTTCATTAGATCATGACCTACAACTAGGAAATATTCTGGTCTTCACTTACATTAGGGGTTCACATTTTGCTGTTAAAATCTATGATAACTCTGGGTGTGAACCAAGTTCTTTTGAGACCGATCAGAAGAAAAGAAAAAGGGATGACAGAGATTCTATTTTCAAAGGTGGTTGGTGCTATGCAACTGATAAAAGTTCAATGAGCAAAGACGGTTCAGGCACCTGTGGTTGCTCAGATGCAGAGATAAGTAAACGGTTGGATGAAGTGAATGGCAAGGGGAAAGCTCCAATCACCACACAGTTTGCTTCAAATTGTGATGATAGAAAGGAAGCTGGCTCCGTTAACAGCCCAGTGGCTAAAGATGTAGGGAGTACAGTAATTCCTTCAGATGGATCTGAGTTGGAAAGGACTCTGAAAAATAGCGATCATGAAGTCAAGGTAAAAAAGGAAGAACCTTCTGAAATACATTCATGCACCGAGACCTCTGGAAAACTCTTATCAACACTTCCTGTAATTTCGGAAGAAAATGAAGAGACCATCTCTGCTGTGTCAACCAGAGCTACAAAAAAATGCCGCACTGGCGATGGATCAGGAGGTGAGGAAGCTATTTCAAGAGATCAGAGGCTCAAACCCCATCATCCCACTTTTGTTGTCATGATGCAAGAACCCTCCTACCTTACAACTGCTTTGAAAATTGATATAAACTTTGCCCAAAAATATAATTTATCGAGGCGCAATGTTAACCTACAGATTCCAAATGGAAGCACTTGGCCTGTTATTTGCTCTGTCACCAACATAGAAGAAGACGGAATCCGCTACACCAGAGAAGGAGTTGCAAGATACCGCTATCCCAGTTGGTGTATCAGAGAAGAAGTTGCAAGAATCCGCTATCGTGGTTGGATTAAATTTGCAACAGACAATGGGCTGCAAGTAGGGGATACTTGTGTGTTTGAGATGATAAAGCAGCAGCCTGAAATAACGTTCTTGGTTCACATAATCCAAGCTACTTACGCTACTAAGCTCCATTTCAACAATATTTCCCAGAACATGAAGTTACGAAGAATTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

526

Amino Acids

58.35

Weight (kDa)

6.06

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	111 - 200	7.1e-11	B3 DNA binding domain
B3	PF02362	387 - 504	2.3e-08	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07280 FvH4_5g07280 FvH4_5g07280
malus_domestica	MD06G1157600.v1.1
prunus_persica	Prupe.5G155300_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0149271 RchiOBHm_Chr2g0149281 RchiOBHm_Chr7g0191351
rosa_laevigata	RLG00000004463 RLG00000020389
rosa_multiflora	Rmu_sc0004860.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438290 Rroxscaffold_2G00098250 Rroxscaffold_3G00263910
rosa_rugosa	Rorug02G0410000 Rorug02G0410100 Rorug06G0510100
rosa_samantha	Rh2AG471000 Rh2BG483200 Rh2CG456900 Rh2DG492200 Rh7AG117500 Rh7BG119400 Rh7CG122500 Rh7DG120600
rosa_wichuraiana	Rw2G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	728
AciI	CCGC	4 cut(s)	1084, 1324, 1354, 1396
AclI	AACGTT	1 cut(s)	1490
AclWI	GGATC	2 cut(s)	910, 1105
AcsI	RAATTY	6 cut(s)	19, 38, 248, 365, 1415, 1572
AcuI	CTGAAG	2 cut(s)	114, 879
AfaI	GTAC	1 cut(s)	883
AfiI	CCNNNNNNNGG	2 cut(s)	58, 899
AluBI	AGCT	8 cut(s)	35, 257, 794, 842, 1070, 1115, 1514, 1531
AluI	AGCT	8 cut(s)	35, 257, 794, 842, 1070, 1115, 1514, 1531
Alw26I	GTCTC	3 cut(s)	620, 983, 1037
AlwI	GGATC	2 cut(s)	910, 1105
AlwNI	CAGNNNCTG	1 cut(s)	445
AoxI	GGCC	1 cut(s)	1280
ApeKI	GCWGC	5 cut(s)	32, 445, 1435, 1474, 1477
ApoI	RAATTY	6 cut(s)	19, 38, 248, 365, 1415, 1572
AspLEI	GCGC	1 cut(s)	1245
AsuHPI	GGTGA	4 cut(s)	306, 793, 1118, 1291
AxyI	CCTNAGG	1 cut(s)	57
BaeI	ACNNNNGTAYC	2 cut(s)	1440, 1473
BanI	GGYRCC	1 cut(s)	728
BauI	CACGAG	1 cut(s)	393
BbsI	GAAGAC	2 cut(s)	544, 1320
BbvI	GCAGC	5 cut(s)	44, 432, 1422, 1486, 1489
BccI	CCATC	8 cut(s)	232, 444, 470, 495, 893, 1055, 1088, 1152
BciVI	GTATCC	1 cut(s)	1441
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	3 cut(s)	620, 983, 1037
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	1256
BfuI	GTATCC	1 cut(s)	1441
BglI	GCCNNNNNGGC	1 cut(s)	1089
BisI	GCNGC	6 cut(s)	33, 446, 1084, 1436, 1475, 1478
BlsI	GCNGC	6 cut(s)	34, 447, 1085, 1437, 1476, 1479
BmiI	GGNNCC	3 cut(s)	481, 730, 847
BmrI	ACTGGG	2 cut(s)	854, 1356
BmsI	GCATC	3 cut(s)	298, 736, 1158
BmuI	ACTGGG	2 cut(s)	854, 1356
BpiI	GAAGAC	2 cut(s)	544, 1320
BplI	GAGNNNNNCTC	2 cut(s)	1034, 1066
BpuEI	CTTGAG	1 cut(s)	451
BsaI	GGTCTC	3 cut(s)	620, 983, 1037
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 899
Bse1I	ACTGG	3 cut(s)	860, 1093, 1362
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	3 cut(s)	46, 456, 1252
BseGI	GGATG	6 cut(s)	219, 481, 506, 658, 775, 1147
BseLI	CCNNNNNNNGG	2 cut(s)	58, 899
BseMI	GCAATG	3 cut(s)	46, 456, 1252
BseMII	CTCAG	4 cut(s)	48, 264, 756, 897
BseNI	ACTGG	3 cut(s)	860, 1093, 1362
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	5 cut(s)	44, 432, 1422, 1486, 1489
BshFI	GGCC	1 cut(s)	1282
BshNI	GGYRCC	1 cut(s)	728
BslI	CCNNNNNNNGG	2 cut(s)	58, 899
BsmAI	GTCTC	3 cut(s)	620, 983, 1037
BsmI	GAATGC	3 cut(s)	112, 272, 511
BsnI	GGCC	1 cut(s)	1282
Bso31I	GGTCTC	3 cut(s)	620, 983, 1037
Bsp143I	GATC	7 cut(s)	412, 520, 631, 902, 934, 1097, 1126
BspACI	CCGC	4 cut(s)	1084, 1324, 1354, 1396
BspANI	GGCC	1 cut(s)	1282
BspCNI	CTCAG	4 cut(s)	49, 265, 755, 898
BspHI	TCATGA	3 cut(s)	523, 937, 1164
BspLI	GGNNCC	3 cut(s)	481, 730, 847
BspPI	GGATC	2 cut(s)	910, 1105
BspT107I	GGYRCC	1 cut(s)	728
BspTNI	GGTCTC	3 cut(s)	620, 983, 1037
BsrDI	GCAATG	3 cut(s)	46, 456, 1252
BsrI	ACTGG	3 cut(s)	860, 1093, 1362
BssMI	GATC	7 cut(s)	412, 520, 631, 902, 934, 1097, 1126
BssSI	CACGAG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	393
Bst4CI	ACNGT	6 cut(s)	340, 424, 722, 765, 810, 886
Bst6I	CTCTTC	1 cut(s)	1035
BstC8I	GCNNGC	1 cut(s)	844
BstDEI	CTNAG	6 cut(s)	57, 273, 742, 906, 1527, 1578
BstF5I	GGATG	6 cut(s)	219, 481, 506, 658, 775, 1147
BstHHI	GCGC	1 cut(s)	1245
BstKTI	GATC	7 cut(s)	415, 523, 634, 905, 937, 1100, 1129
BstMAI	GTCTC	3 cut(s)	620, 983, 1037
BstMBI	GATC	7 cut(s)	412, 520, 631, 902, 934, 1097, 1126
BstMWI	GCNNNNNNNGC	2 cut(s)	1089, 1520
BstSFI	CTRYAG	1 cut(s)	1256
BstV1I	GCAGC	5 cut(s)	44, 432, 1422, 1486, 1489
BstV2I	GAAGAC	2 cut(s)	544, 1320
BstX2I	RGATCY	1 cut(s)	902
BstYI	RGATCY	1 cut(s)	902
Bsu36I	CCTNAGG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	1441
BsuRI	GGCC	1 cut(s)	1282
BtgZI	GCGATG	2 cut(s)	463, 1107
BtsCI	GGATG	6 cut(s)	219, 481, 506, 658, 775, 1147
BtsIMutI	CAGTG	3 cut(s)	270, 867, 1086
Cac8I	GCNNGC	1 cut(s)	844
CaiI	CAGNNNCTG	1 cut(s)	445
CciI	TCATGA	3 cut(s)	523, 937, 1164
CfoI	GCGC	1 cut(s)	1245
Csp6I	GTAC	1 cut(s)	882
CspCI	CAANNNNNGTGG	6 cut(s)	102, 137, 793, 828, 1141, 1176
CviAII	CATG	8 cut(s)	293, 343, 497, 524, 938, 981, 1165, 1558
CviQI	GTAC	1 cut(s)	882
DdeI	CTNAG	6 cut(s)	57, 273, 742, 906, 1527, 1578
DpnI	GATC	7 cut(s)	414, 522, 633, 904, 936, 1099, 1128
DpnII	GATC	7 cut(s)	412, 520, 631, 902, 934, 1097, 1126
Eam1104I	CTCTTC	1 cut(s)	1035
EarI	CTCTTC	1 cut(s)	1035
Eco31I	GGTCTC	3 cut(s)	620, 983, 1037
Eco57I	CTGAAG	2 cut(s)	114, 879
Eco81I	CCTNAGG	1 cut(s)	57
EcoRI	GAATTC	3 cut(s)	19, 248, 1572
FaeI	CATG	8 cut(s)	296, 346, 500, 527, 941, 984, 1168, 1561
FalI	AAGNNNNNCTT	1 cut(s)	1561
FatI	CATG	8 cut(s)	292, 342, 496, 523, 937, 980, 1164, 1557
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	6 cut(s)	33, 446, 1084, 1436, 1475, 1478
FokI	GGATG	6 cut(s)	206, 488, 513, 665, 782, 1134
Fsp4HI	GCNGC	6 cut(s)	33, 446, 1084, 1436, 1475, 1478
FspBI	CTAG	1 cut(s)	536
GlaI	GCGC	1 cut(s)	1244
GluI	GCNGC	6 cut(s)	33, 446, 1084, 1436, 1475, 1478
HaeIII	GGCC	1 cut(s)	1282
HhaI	GCGC	1 cut(s)	1245
Hin1II	CATG	8 cut(s)	296, 346, 500, 527, 941, 984, 1168, 1561
Hin6I	GCGC	1 cut(s)	1243
HinP1I	GCGC	1 cut(s)	1243
HincII	GTYRAC	3 cut(s)	853, 1062, 1252
HindII	GTYRAC	3 cut(s)	853, 1062, 1252
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	6 cut(s)	434, 662, 919, 1261, 1320, 1392
HpaI	GTTAAC	2 cut(s)	853, 1252
HphI	GGTGA	4 cut(s)	306, 793, 1118, 1291
Hpy166II	GTNNAC	7 cut(s)	572, 611, 761, 853, 1062, 1252, 1501
Hpy8I	GTNNAC	7 cut(s)	572, 611, 761, 853, 1062, 1252, 1501
HpyAV	CCTTC	3 cut(s)	903, 975, 1331
HpyCH4III	ACNGT	6 cut(s)	340, 424, 722, 765, 810, 886
HpyCH4IV	ACGT	1 cut(s)	1490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1089, 1520
HpyF3I	CTNAG	6 cut(s)	57, 273, 742, 906, 1527, 1578
HpySE526I	ACGT	1 cut(s)	1490
Hsp92II	CATG	8 cut(s)	296, 346, 500, 527, 941, 984, 1168, 1561
HspAI	GCGC	1 cut(s)	1243
Ksp22I	TGATCA	1 cut(s)	412
KspAI	GTTAAC	2 cut(s)	853, 1252
Kzo9I	GATC	7 cut(s)	412, 520, 631, 902, 934, 1097, 1126
LmnI	GCTCC	6 cut(s)	4, 124, 485, 799, 851, 1536
Lsp1109I	GCAGC	5 cut(s)	44, 432, 1422, 1486, 1489
LweI	GCATC	3 cut(s)	298, 736, 1158
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	1490
MaeIII	GTNAC	6 cut(s)	153, 208, 242, 334, 1297, 1563
MalI	GATC	7 cut(s)	414, 522, 633, 904, 936, 1099, 1128
MboI	GATC	7 cut(s)	412, 520, 631, 902, 934, 1097, 1126
MflI	RGATCY	1 cut(s)	902
MlyI	GAGTC	1 cut(s)	913
MmeI	TCCRAC	3 cut(s)	747, 891, 1388
MseI	TTAA	4 cut(s)	585, 852, 1251, 1413
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	35
Mva1269I	GAATGC	3 cut(s)	112, 272, 511
MwoI	GCNNNNNNNGC	2 cut(s)	1089, 1520
NdeII	GATC	7 cut(s)	412, 520, 631, 902, 934, 1097, 1126
NlaIII	CATG	8 cut(s)	296, 346, 500, 527, 941, 984, 1168, 1561
NlaIV	GGNNCC	3 cut(s)	481, 730, 847
NmuCI	GTSAC	4 cut(s)	153, 242, 334, 1297
PagI	TCATGA	3 cut(s)	523, 937, 1164
PctI	GAATGC	3 cut(s)	112, 272, 511
PfeI	GAWTC	5 cut(s)	434, 662, 1261, 1320, 1392
PkrI	GCNGC	6 cut(s)	34, 447, 1085, 1437, 1476, 1479
PleI	GAGTC	1 cut(s)	913
PpsI	GAGTC	1 cut(s)	913
Psp1406I	AACGTT	1 cut(s)	1490
PspN4I	GGNNCC	3 cut(s)	481, 730, 847
PstNI	CAGNNNCTG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	902
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	883
RsaNI	GTAC	1 cut(s)	882
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	4 cut(s)	585, 852, 1251, 1413
SatI	GCNGC	6 cut(s)	33, 446, 1084, 1436, 1475, 1478
Sau3AI	GATC	7 cut(s)	412, 520, 631, 902, 934, 1097, 1126
SchI	GAGTC	1 cut(s)	913
SfaNI	GCATC	3 cut(s)	298, 736, 1158
SfcI	CTRYAG	1 cut(s)	1256
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
SsiI	CCGC	4 cut(s)	1084, 1324, 1354, 1396
SspI	AATATT	4 cut(s)	145, 216, 544, 1546
SspMI	CTAG	1 cut(s)	536
TaaI	ACNGT	6 cut(s)	340, 424, 722, 765, 810, 886
TaiI	ACGT	1 cut(s)	1493
TaqI	TCGA	2 cut(s)	419, 1238
TaqII	GACCGA	1 cut(s)	644
TatI	WGTACW	1 cut(s)	881
TauI	GCSGC	1 cut(s)	1086
TfiI	GAWTC	5 cut(s)	434, 662, 1261, 1320, 1392
Tru1I	TTAA	4 cut(s)	585, 852, 1251, 1413
Tru9I	TTAA	4 cut(s)	585, 852, 1251, 1413
TscAI	CASTG	3 cut(s)	277, 867, 1093
TseFI	GTSAC	4 cut(s)	153, 242, 334, 1297
TseI	GCWGC	5 cut(s)	32, 445, 1435, 1474, 1477
Tsp45I	GTSAC	4 cut(s)	153, 242, 334, 1297
TspDTI	ATGAA	9 cut(s)	208, 281, 482, 504, 786, 954, 969, 1053, 1574
TspGWI	ACGGA	2 cut(s)	838, 1332
TspRI	CASTG	3 cut(s)	277, 867, 1093
XapI	RAATTY	6 cut(s)	19, 38, 248, 365, 1415, 1572
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.