Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002691

Physical Location & Seq

Genomic Coordinates Reverse (-)

10129677 .. 10136722

Gene Structure 7046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17098

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2994 bp

ATGGTTCATGATTTCGAAGCTTGTGCAGATTGCACTCAGAAGTGTTTGCTGATTCATGGGAATAAGAAAAGTGGTTCCCATATTGAAACCTCTTTTTTCAAAATCATGTTTGGAAAACAGTTTTCTAAATTTATGGAATTGCCTCCAAAAGTTGCTCGTATTTTGTTATTGTCTGATCGGAGAACTTTTCTTGAAGATTCACGAGGACTGCGGTGGAAAGTTGCAATATCTAGTGTTAATGGTTCCTGGGCCTTTCAACAAGGATGGAATGCTTTTGCACTAGACCATGACCTACAAGTAGGAGATTTTCTGGTCTTCAATTACGTTGTGGGTTCACATTTTACTGTTAAGATATATGACAACTCTGGGTGTGAAGTGAATCTTTTTGAGACCATACATCAGAACAACAGAAATAGGGTTCACACAGATGGTCAGTGCCACACCATTGGTAAAAGTACAGTGAGCAAATCCGTTTCAGATACCTTTGCTGGTCCAGATGCAGAAATAAGTAAATGCTTGAATGAAGTGCATGGTATGAAGAAACCTCTAATTATCACAGAAAATGCTTCAGATCACGATGATGATGAAAGGTCAAAGTGCAAGCGCAAAGCAGAATTTGCTGACGACATGTCATGTATGATGGAAAGAGAATATGGACACCAACAAGGAGACAACAGAGTCCGTATTCTTGATTTGTCTAGTTTTGAATCATTCAAAAAGATAAAAACCTGTGGCAGTGATGGAAGCAATAAAGTTGCTGCAGTGAATGAAACACATTCTCATCATGCTGATTCATCACTGAAATTGAGAAATGAAGTTAGCTCAGTTAAAATTCCAGTGGCCAAAGAGTTGGTGGATAGAGTAATTCCTTCAGATGCATCTGAGATTGAAAGGACTCAGAAAAATAACTATTCTGAATACAAGGTAAAGGGGGCACCCCTGTCTGATAAAGATTCATCCACCAATGTGACCTCTGGACATCTCTTTCCAACACTTCCTGAAAATCCTGAACAAAAGGAAGAGATCTTCTCTGATATTTCAAACAGAGCAGCCAAAAAATGCCAGTCTGCTAATGTATCAGGCAATGATCATCAGGTAGCAGTATCAGGAAATGAACATGATTTGATTGATGACACTTGTCAAAGTGCCAACAAAAAAATTACTGAAATTTCAAAGTCCTGCGATAAAGTGATGAAGGTCATTGAAAACAAGCCGGTGGAGTTGACTTCACATCCATGCGGTCAGGAGGTCATTCCAGAAAGTAATGATATTGTGATGATGAACATTGGAAAAGAGTCTGTGGATTTGACTTCAGATCCATGCAGTCGGGAGGTCATTCCAGAAAGAAAGGATAAAGCTGGGACCATCTTTGAAAATGTTATTGTGGACTTGACTTCAGATCAATGCAGTCAGGAGTTCATTGAAAAAGAGGAATCATTAGATCTTTCCACCAAGGTTGGAATACAAATTCCTTCAGGTCCAGCTGAGTTTGAAAGGACTGAGGAATGTAACAAATCTGAAGCCAAGGTCAATAGGGTACCGTCTGATAAAGATTCATGCACTGAGACCTCTGGGCATCCCTTCCCAACACATTCTGAAAATCCTGAAGAAAATGGAGAGACCACCTCAAAGAAAGCAACAAAAGAATGCCGGAATGCTGATGGATCAGAATTATTATCAGGCAAGGATCAGGTGGTACCATCACAAAAGGAACCTGATTTAATGTATGCTAGTTCCCCAAGAGACAACAAGAAATTGACTGGGATTTCAGAGTCTATTCATAATCCCCTTACTTTTGAATGCCAAAATTATGATGTGATCATCAACGAGAAGGAGTCTGTTGAGGTGACTTGTCAGGACGTCATTCCACAGAGAAAGGATACCATCATTGAAAACAAGTCTGTTGAGGTGACTTTAGAACTATGCAGGCAGGAAGTTATTCCAGAAAGAAAGGATACAAACGTCATTGGAGAAGAGTCTGTTGATTTGACTTTAGATCCAAGCTGTCAAGAGTTCACTCCAGAAACAAAGGGGGAATCATTAAAGGTTTTCAACAGGGTACACAGACAGCTTGCTAATACAAATATAAGAGTAGTTCCTTCAGATGCATCTGACCTTGAAAGGACTGAGAAAAGAAATTATTCTGCAGTTAAGGTCAGAAAGGTATCAACTTCTGATAAAGTTCCACACACCAAGCAGACCTCTTGTCATCTCAACCCAATACGTCATGTACATGTTGAAGAAGATAAAACAAACATCCCTAAGATTTCAAACAGAGGAATAAACAAACTTAAGACTACTGATGGATCAGTGGCTGCATCCCAAAAGGAACAAGTTTCTATCGGTGACAGCTGCCAACAAGCCAAAAAGAAATTTACTGGAATTTCAAATTCTTTTGAAGCTCCGGTTACTTCTGGATCCCAATATTATTCAGCTAAAATGTCAAAGATCATGGAAAAGGAGTTTGTAAACTCCAGTTCAGATCCATGCAGTCAGGAGATTATTCCAGAAGTTGATGCCACATCAAAGCTCTCTAACAAGTTGCAGAGTCAGAGTAATTTTGCAAGAAAAAATGACAGCGCTCTTTCAGTGGTAAAACCTGAACCCATTGAAGATGCAGGTGCAACCTTTCCAAGTTTCACAATCTCCTGTTTGGCAACTGACCGTCAATCTTTTCTGGAGTTGCCAAAGAGTTTGCCATTACCCTTGAACACCATGAAGGGAAGGTCTAAACTGGATAGGAGGATAGTTTATCTTCAAGGTCCTGATAAGAGATTGTGGCCAGTCCTCTACATTCAGAAATTTTTCTTCAGAACTTTGGCAAATGGTTGGGAGGCTTTCAGCATGGCAAATAATATTGAACAAGGAGATCGATGTACTATTGAGGTCACAAATCAAACTGAAGGCATATGTACTGTGCACATAGTTAAGATGAGAGATGATATGGAATTCTATGAAGAGTATGAGCACAGTCCTCTCATTGACCTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

997

Amino Acids

111.49

Weight (kDa)

5.58

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	32 - 121	7.7e-11	B3 DNA binding domain
B3	PF02362	899 - 976	6.9e-06	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07280 FvH4_5g07280 FvH4_5g07280
malus_domestica	MD06G1157600.v1.1
prunus_persica	Prupe.5G155300_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0149271 RchiOBHm_Chr2g0149281 RchiOBHm_Chr7g0191351
rosa_laevigata	RLG00000004463 RLG00000020389
rosa_multiflora	Rmu_sc0004860.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438290 Rroxscaffold_2G00098250 Rroxscaffold_3G00263910
rosa_rugosa	Rorug02G0410000 Rorug02G0410100 Rorug06G0510100
rosa_samantha	Rh2AG471000 Rh2BG483200 Rh2CG456900 Rh2DG492200 Rh7AG117500 Rh7BG119400 Rh7CG122500 Rh7DG120600
rosa_wichuraiana	Rw2G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2609
AasI	GACNNNNNNGTC	1 cut(s)	677
AatII	GACGTC	1 cut(s)	1863
Acc36I	ACCTGC	1 cut(s)	2609
Acc65I	GGTACC	2 cut(s)	1537, 1696
AccB1I	GGYRCC	3 cut(s)	934, 1537, 1696
AciI	CCGC	2 cut(s)	211, 1239
AclWI	GGATC	8 cut(s)	1310, 1672, 1695, 1991, 2314, 2412, 2425, 2477
AcoI	YGGCCR	2 cut(s)	840, 2780
AcyI	GRCGYC	1 cut(s)	1860
AfaI	GTAC	7 cut(s)	457, 1539, 1698, 2061, 2232, 2878, 2914
AfeI	AGCGCT	1 cut(s)	2581
AflII	CTTAAG	1 cut(s)	2291
AflIII	ACRYGT	2 cut(s)	627, 2233
AhdI	GACNNNNNGTC	2 cut(s)	628, 2205
AjnI	CCWGG	1 cut(s)	245
AleI	CACNNNNGTG	1 cut(s)	965
Alw21I	GWGCWC	2 cut(s)	2922, 2970
Alw26I	GTCTC	5 cut(s)	383, 663, 1559, 1613, 1737
Alw44I	GTGCAC	1 cut(s)	2918
AlwI	GGATC	8 cut(s)	1310, 1672, 1695, 1991, 2314, 2412, 2425, 2477
AlwNI	CAGNNNCTG	1 cut(s)	2315
Aor51HI	AGCGCT	1 cut(s)	2581
AoxI	GGCC	3 cut(s)	249, 840, 2780
ApaLI	GTGCAC	1 cut(s)	2918
ApeKI	GCWGC	4 cut(s)	758, 1049, 2315, 2352
Asp700I	GAANNNNTTC	3 cut(s)	1938, 2140, 2804
Asp718I	GGTACC	2 cut(s)	1537, 1696
AspLEI	GCGC	2 cut(s)	606, 2582
AspS9I	GGNCC	5 cut(s)	249, 491, 1362, 1478, 2762
AsuHPI	GGTGA	3 cut(s)	1858, 1921, 2357
AsuII	TTCGAA	1 cut(s)	15
AvaII	GGWCC	4 cut(s)	491, 1362, 1478, 2762
BaeGI	GKGCMC	2 cut(s)	937, 2922
BaeI	ACNNNNGTAYC	2 cut(s)	1947, 1980
BalI	TGGCCA	2 cut(s)	842, 2782
BamHI	GGATCC	1 cut(s)	2417
BanI	GGYRCC	3 cut(s)	934, 1537, 1696
BauI	CACGAG	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	2 cut(s)	2922, 2970
BbvI	GCAGC	4 cut(s)	745, 1061, 2302, 2339
BccI	CCATC	9 cut(s)	258, 422, 634, 734, 1373, 1655, 1708, 1892, 2297
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	247
BciVI	GTATCC	2 cut(s)	1873, 1948
BclI	TGATCA	2 cut(s)	1087, 1818
BcoDI	GTCTC	5 cut(s)	383, 663, 1559, 1613, 1737
BfaI	CTAG	4 cut(s)	231, 281, 699, 1731
BfmI	CTRYAG	2 cut(s)	759, 2145
BfoI	RGCGCY	1 cut(s)	2583
BfrI	CTTAAG	1 cut(s)	2291
BfuAI	ACCTGC	1 cut(s)	2609
BfuI	GTATCC	2 cut(s)	1873, 1948
BglII	AGATCT	2 cut(s)	1023, 1441
BisI	GCNGC	4 cut(s)	759, 1050, 2316, 2353
BlsI	GCNGC	4 cut(s)	760, 1051, 2317, 2354
Bme1390I	CCNGG	1 cut(s)	247
Bme18I	GGWCC	4 cut(s)	491, 1362, 1478, 2762
BmeRI	GACNNNNNGTC	2 cut(s)	628, 2205
BmgT120I	GGNCC	5 cut(s)	249, 491, 1362, 1478, 2762
BmiI	GGNNCC	8 cut(s)	76, 244, 936, 1363, 1539, 1698, 1713, 2419
BmrFI	CCNGG	1 cut(s)	247
BmrI	ACTGGG	1 cut(s)	1770
BmsI	GCATC	9 cut(s)	487, 865, 887, 1585, 2095, 2117, 2327, 2506, 2605
BmuI	ACTGGG	1 cut(s)	1770
BoxI	GACNNNNGTC	1 cut(s)	1137
BpiI	GAAGAC	1 cut(s)	307
BplI	GAGNNNNNCTC	4 cut(s)	1013, 1045, 1610, 1642
BpmI	CTGGAG	3 cut(s)	2004, 2458, 2699
Bpu14I	TTCGAA	1 cut(s)	15
Bsa29I	ATCGAT	1 cut(s)	2872
BsaHI	GRCGYC	1 cut(s)	1860
BsaI	GGTCTC	3 cut(s)	383, 1559, 1613
BsaJI	CCNNGG	3 cut(s)	246, 1452, 1524
BsaWI	WCCGGW	1 cut(s)	2404
Bse118I	RCCGGY	1 cut(s)	1213
Bse1I	ACTGG	7 cut(s)	836, 1063, 1765, 2383, 2475, 2739, 2783
Bse3DI	GCAATG	1 cut(s)	1090
BseBI	CCWGG	1 cut(s)	247
BseCI	ATCGAT	1 cut(s)	2872
BseDI	CCNNGG	3 cut(s)	246, 1452, 1524
BseGI	GGATG	6 cut(s)	269, 956, 1231, 1576, 2256, 2318
BseMI	GCAATG	1 cut(s)	1090
BseMII	CTCAG	8 cut(s)	50, 837, 873, 911, 1476, 1491, 1554, 2118
BseNI	ACTGG	7 cut(s)	836, 1063, 1765, 2383, 2475, 2739, 2783
BseSI	GKGCMC	2 cut(s)	937, 2922
BseXI	GCAGC	4 cut(s)	745, 1061, 2302, 2339
BseYI	CCCAGC	1 cut(s)	1358
BsgI	GTGCAG	1 cut(s)	45
BshFI	GGCC	3 cut(s)	251, 842, 2782
BshNI	GGYRCC	3 cut(s)	934, 1537, 1696
BshVI	ATCGAT	1 cut(s)	2872
BsiHKAI	GWGCWC	2 cut(s)	2922, 2970
BsiSI	CCGG	3 cut(s)	1214, 1651, 2405
BslFI	GGGAC	1 cut(s)	1375
BsmAI	GTCTC	5 cut(s)	383, 663, 1559, 1613, 1737
BsmFI	GGGAC	1 cut(s)	1375
BsmI	GAATGC	4 cut(s)	274, 1652, 1660, 1805
BsnI	GGCC	3 cut(s)	251, 842, 2782
Bso31I	GGTCTC	3 cut(s)	383, 1559, 1613
Bsp119I	TTCGAA	1 cut(s)	15
Bsp1286I	GDGCHC	3 cut(s)	937, 2922, 2970
Bsp1407I	TGTACA	1 cut(s)	2230
BspACI	CCGC	2 cut(s)	211, 1239
BspANI	GGCC	3 cut(s)	251, 842, 2782
BspCNI	CTCAG	8 cut(s)	49, 836, 874, 910, 1477, 1492, 1555, 2119
BspDI	ATCGAT	1 cut(s)	2872
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	8 cut(s)	76, 244, 936, 1363, 1539, 1698, 1713, 2419
BspMAI	CTGCAG	2 cut(s)	763, 2149
BspMI	ACCTGC	1 cut(s)	2609
BspPI	GGATC	8 cut(s)	1310, 1672, 1695, 1991, 2314, 2412, 2425, 2477
BspT104I	TTCGAA	1 cut(s)	15
BspT107I	GGYRCC	3 cut(s)	934, 1537, 1696
BspTI	CTTAAG	1 cut(s)	2291
BspTNI	GGTCTC	3 cut(s)	383, 1559, 1613
BsrDI	GCAATG	1 cut(s)	1090
BsrFI	RCCGGY	1 cut(s)	1213
BsrGI	TGTACA	1 cut(s)	2230
BsrI	ACTGG	7 cut(s)	836, 1063, 1765, 2383, 2475, 2739, 2783
BssAI	RCCGGY	1 cut(s)	1213
BssECI	CCNNGG	3 cut(s)	246, 1452, 1524
BssNI	GRCGYC	1 cut(s)	1860
BssSI	CACGAG	1 cut(s)	201
BssT1I	CCWWGG	2 cut(s)	1452, 1524
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	7 cut(s)	120, 346, 460, 1542, 2666, 2917, 2972
Bst6I	CTCTTC	3 cut(s)	1014, 1968, 2952
BstACI	GRCGYC	1 cut(s)	1860
BstAFI	CTTAAG	1 cut(s)	2291
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstAUI	TGTACA	1 cut(s)	2230
BstBI	TTCGAA	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	602, 1928, 2073
BstDEI	CTNAG	9 cut(s)	36, 823, 882, 897, 1485, 1500, 1563, 2127, 2262
BstF5I	GGATG	6 cut(s)	269, 956, 1231, 1576, 2256, 2318
BstH2I	RGCGCY	1 cut(s)	2583
BstHHI	GCGC	2 cut(s)	606, 2582
BstMAI	GTCTC	5 cut(s)	383, 663, 1559, 1613, 1737
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNI	CCWGG	1 cut(s)	247
BstNSI	RCATGY	2 cut(s)	631, 2237
BstPAI	GACNNNNGTC	1 cut(s)	1137
BstSCI	CCNGG	1 cut(s)	245
BstSFI	CTRYAG	2 cut(s)	759, 2145
BstSLI	GKGCMC	2 cut(s)	937, 2922
BstV1I	GCAGC	4 cut(s)	745, 1061, 2302, 2339
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	6 cut(s)	1023, 1315, 1441, 1996, 2417, 2482
BstXI	CCANNNNNNTGG	2 cut(s)	446, 850
BstYI	RGATCY	6 cut(s)	1023, 1315, 1441, 1996, 2417, 2482
Bsu15I	ATCGAT	1 cut(s)	2872
BsuI	GTATCC	2 cut(s)	1873, 1948
BsuRI	GGCC	3 cut(s)	251, 842, 2782
BsuTUI	ATCGAT	1 cut(s)	2872
BtsCI	GGATG	6 cut(s)	269, 956, 1231, 1576, 2256, 2318
BtsI	GCAGTG	2 cut(s)	742, 768
BtsIMutI	CAGTG	9 cut(s)	440, 465, 742, 768, 797, 843, 1560, 2316, 2595
BveI	ACCTGC	1 cut(s)	2609
Cac8I	GCNNGC	3 cut(s)	602, 1928, 2073
CaiI	CAGNNNCTG	1 cut(s)	2315
CciI	TCATGA	1 cut(s)	7
CfoI	GCGC	2 cut(s)	606, 2582
Cfr10I	RCCGGY	1 cut(s)	1213
Cfr13I	GGNCC	5 cut(s)	249, 491, 1362, 1478, 2762
ClaI	ATCGAT	1 cut(s)	2872
Csp6I	GTAC	7 cut(s)	456, 1538, 1697, 2060, 2231, 2877, 2913
CspCI	CAANNNNNGTGG	2 cut(s)	1438, 1473
CviQI	GTAC	7 cut(s)	456, 1538, 1697, 2060, 2231, 2877, 2913
DdeI	CTNAG	9 cut(s)	36, 823, 882, 897, 1485, 1500, 1563, 2127, 2262
DrdI	GACNNNNNNGTC	1 cut(s)	677
DriI	GACNNNNNGTC	2 cut(s)	628, 2205
DseDI	GACNNNNNNGTC	1 cut(s)	677
EaeI	YGGCCR	2 cut(s)	840, 2780
Eam1104I	CTCTTC	3 cut(s)	1014, 1968, 2952
Eam1105I	GACNNNNNGTC	2 cut(s)	628, 2205
EarI	CTCTTC	3 cut(s)	1014, 1968, 2952
Eco130I	CCWWGG	2 cut(s)	1452, 1524
Eco31I	GGTCTC	3 cut(s)	383, 1559, 1613
Eco47I	GGWCC	4 cut(s)	491, 1362, 1478, 2762
Eco47III	AGCGCT	1 cut(s)	2581
EcoO109I	RGGNCCY	1 cut(s)	2762
EcoRI	GAATTC	1 cut(s)	2948
EcoRII	CCWGG	1 cut(s)	245
EcoT14I	CCWWGG	2 cut(s)	1452, 1524
EcoT22I	ATGCAT	2 cut(s)	880, 2110
ErhI	CCWWGG	2 cut(s)	1452, 1524
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	1 cut(s)	1375
FauNDI	CATATG	1 cut(s)	2909
FbaI	TGATCA	2 cut(s)	1087, 1818
Fnu4HI	GCNGC	4 cut(s)	759, 1050, 2316, 2353
FokI	GGATG	6 cut(s)	276, 943, 1218, 1563, 2243, 2305
Fsp4HI	GCNGC	4 cut(s)	759, 1050, 2316, 2353
FspBI	CTAG	4 cut(s)	231, 281, 699, 1731
GlaI	GCGC	2 cut(s)	605, 2581
GluI	GCNGC	4 cut(s)	759, 1050, 2316, 2353
GsaI	CCCAGC	1 cut(s)	1362
GsuI	CTGGAG	3 cut(s)	2004, 2458, 2699
HaeII	RGCGCY	1 cut(s)	2583
HaeIII	GGCC	3 cut(s)	251, 842, 2782
HapII	CCGG	3 cut(s)	1214, 1651, 2405
HhaI	GCGC	2 cut(s)	606, 2582
Hin1I	GRCGYC	1 cut(s)	1860
Hin6I	GCGC	2 cut(s)	604, 2580
HinP1I	GCGC	2 cut(s)	604, 2580
HincII	GTYRAC	1 cut(s)	1224
HindII	GTYRAC	1 cut(s)	1224
HindIII	AAGCTT	1 cut(s)	18
HpaII	CCGG	3 cut(s)	1214, 1651, 2405
HphI	GGTGA	3 cut(s)	1858, 1921, 2357
Hpy166II	GTNNAC	8 cut(s)	335, 421, 1224, 1387, 2016, 2062, 2470, 2920
Hpy8I	GTNNAC	8 cut(s)	335, 421, 1224, 1387, 2016, 2062, 2470, 2920
HpyAV	CCTTC	9 cut(s)	879, 1189, 1482, 1591, 1825, 2109, 2713, 2718, 2897
HpyCH4III	ACNGT	7 cut(s)	120, 346, 460, 1542, 2666, 2917, 2972
HpyCH4IV	ACGT	4 cut(s)	324, 1860, 1962, 2224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	9 cut(s)	36, 823, 882, 897, 1485, 1500, 1563, 2127, 2262
HpySE526I	ACGT	4 cut(s)	324, 1860, 1962, 2224
Hsp92I	GRCGYC	1 cut(s)	1860
HspAI	GCGC	2 cut(s)	604, 2580
KpnI	GGTACC	2 cut(s)	1541, 1700
Ksp22I	TGATCA	2 cut(s)	1087, 1818
LmnI	GCTCC	1 cut(s)	2407
Lsp1109I	GCAGC	4 cut(s)	745, 1061, 2302, 2339
LweI	GCATC	9 cut(s)	487, 865, 887, 1585, 2095, 2117, 2327, 2506, 2605
MaeI	CTAG	4 cut(s)	231, 281, 699, 1731
MaeII	ACGT	4 cut(s)	324, 1860, 1962, 2224
MaeIII	GTNAC	7 cut(s)	967, 1508, 1846, 1909, 2345, 2407, 2887
MflI	RGATCY	6 cut(s)	1023, 1315, 1441, 1996, 2417, 2482
MhlI	GDGCHC	3 cut(s)	937, 2922, 2970
MlsI	TGGCCA	2 cut(s)	842, 2782
MluNI	TGGCCA	2 cut(s)	842, 2782
MlyI	GAGTC	7 cut(s)	687, 889, 1304, 1781, 1844, 1985, 2557
MmeI	TCCRAC	2 cut(s)	1013, 1438
Mox20I	TGGCCA	2 cut(s)	842, 2782
Mph1103I	ATGCAT	2 cut(s)	880, 2110
MroXI	GAANNNNTTC	3 cut(s)	1938, 2140, 2804
MscI	TGGCCA	2 cut(s)	842, 2782
MseI	TTAA	8 cut(s)	237, 348, 828, 1721, 2042, 2151, 2292, 2928
MslI	CAYNNNNRTG	5 cut(s)	426, 579, 965, 1234, 2232
Msp20I	TGGCCA	2 cut(s)	842, 2782
MspA1I	CMGCKG	2 cut(s)	1484, 2352
MspCI	CTTAAG	1 cut(s)	2291
MspI	CCGG	3 cut(s)	1214, 1651, 2405
MspR9I	CCNGG	1 cut(s)	247
Mva1269I	GAATGC	4 cut(s)	274, 1652, 1660, 1805
MvaI	CCWGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	617
NdeI	CATATG	1 cut(s)	2909
NlaIV	GGNNCC	8 cut(s)	76, 244, 936, 1363, 1539, 1698, 1713, 2419
NmuCI	GTSAC	5 cut(s)	967, 1846, 1909, 2345, 2887
NsiI	ATGCAT	2 cut(s)	880, 2110
NspI	RCATGY	2 cut(s)	631, 2237
NspV	TTCGAA	1 cut(s)	15
OliI	CACNNNNGTG	1 cut(s)	965
PagI	TCATGA	1 cut(s)	7
PaqCI	CACCTGC	1 cut(s)	2609
PciI	ACATGT	2 cut(s)	627, 2233
PctI	GAATGC	4 cut(s)	274, 1652, 1660, 1805
PdmI	GAANNNNTTC	3 cut(s)	1938, 2140, 2804
PfeI	GAWTC	9 cut(s)	52, 197, 379, 707, 791, 953, 1433, 1553, 2036
PkrI	GCNGC	4 cut(s)	760, 1051, 2317, 2354
PleI	GAGTC	7 cut(s)	686, 889, 1303, 1780, 1843, 1984, 2556
PpsI	GAGTC	7 cut(s)	686, 889, 1303, 1780, 1843, 1984, 2556
PpuMI	RGGWCCY	1 cut(s)	2762
PscI	ACATGT	2 cut(s)	627, 2233
PshAI	GACNNNNGTC	1 cut(s)	1137
Psp5II	RGGWCCY	1 cut(s)	2762
Psp6I	CCWGG	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	1358
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	8 cut(s)	76, 244, 936, 1363, 1539, 1698, 1713, 2419
PspPI	GGNCC	5 cut(s)	249, 491, 1362, 1478, 2762
PspPPI	RGGWCCY	1 cut(s)	2762
PstI	CTGCAG	2 cut(s)	763, 2149
PstNI	CAGNNNCTG	1 cut(s)	2315
PsuI	RGATCY	6 cut(s)	1023, 1315, 1441, 1996, 2417, 2482
PvuII	CAGCTG	2 cut(s)	1484, 2352
RsaI	GTAC	7 cut(s)	457, 1539, 1698, 2061, 2232, 2878, 2914
RsaNI	GTAC	7 cut(s)	456, 1538, 1697, 2060, 2231, 2877, 2913
RseI	CAYNNNNRTG	5 cut(s)	426, 579, 965, 1234, 2232
SaqAI	TTAA	8 cut(s)	237, 348, 828, 1721, 2042, 2151, 2292, 2928
SatI	GCNGC	4 cut(s)	759, 1050, 2316, 2353
Sau96I	GGNCC	5 cut(s)	249, 491, 1362, 1478, 2762
SchI	GAGTC	7 cut(s)	687, 889, 1304, 1781, 1844, 1985, 2557
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	3 cut(s)	937, 2922, 2970
SfaNI	GCATC	9 cut(s)	487, 865, 887, 1585, 2095, 2117, 2327, 2506, 2605
SfcI	CTRYAG	2 cut(s)	759, 2145
SfuI	TTCGAA	1 cut(s)	15
SinI	GGWCC	4 cut(s)	491, 1362, 1478, 2762
SmiMI	CAYNNNNRTG	5 cut(s)	426, 579, 965, 1234, 2232
SmlI	CTYRAG	1 cut(s)	2291
SmoI	CTYRAG	1 cut(s)	2291
SsiI	CCGC	2 cut(s)	211, 1239
SspI	AATATT	2 cut(s)	2426, 2857
SspMI	CTAG	4 cut(s)	231, 281, 699, 1731
StyD4I	CCNGG	1 cut(s)	245
StyI	CCWWGG	2 cut(s)	1452, 1524
TaaI	ACNGT	7 cut(s)	120, 346, 460, 1542, 2666, 2917, 2972
TaiI	ACGT	4 cut(s)	327, 1863, 1965, 2227
TaqI	TCGA	2 cut(s)	15, 2872
TatI	WGTACW	4 cut(s)	455, 2230, 2876, 2912
TfiI	GAWTC	9 cut(s)	52, 197, 379, 707, 791, 953, 1433, 1553, 2036
Tru1I	TTAA	8 cut(s)	237, 348, 828, 1721, 2042, 2151, 2292, 2928
Tru9I	TTAA	8 cut(s)	237, 348, 828, 1721, 2042, 2151, 2292, 2928
TscAI	CASTG	9 cut(s)	440, 465, 742, 768, 804, 843, 1567, 2316, 2595
TseFI	GTSAC	5 cut(s)	967, 1846, 1909, 2345, 2887
TseI	GCWGC	4 cut(s)	758, 1049, 2315, 2352
Tsp45I	GTSAC	5 cut(s)	967, 1846, 1909, 2345, 2887
TspGWI	ACGGA	2 cut(s)	460, 671
TspRI	CASTG	9 cut(s)	440, 465, 742, 768, 804, 843, 1567, 2316, 2595
Vha464I	CTTAAG	1 cut(s)	2291
VneI	GTGCAC	1 cut(s)	2918
VpaK11BI	GGWCC	4 cut(s)	491, 1362, 1478, 2762
XceI	RCATGY	2 cut(s)	631, 2237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	850
XmnI	GAANNNNTTC	3 cut(s)	1938, 2140, 2804
XspI	CTAG	4 cut(s)	231, 281, 699, 1731
ZraI	GACGTC	1 cut(s)	1861
Zsp2I	ATGCAT	2 cut(s)	880, 2110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.