Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002691

Physical Location & Seq

Genomic Coordinates Forward (+)

19446407 .. 19450095

Gene Structure 3689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00098250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGTCACGAGTTCAAAGCTTGTGTGGAATGCACTGAGAAGTGTTTGCTGGTTCATGGGAACAAGAGTGATGCTTCACCTGTCATAACTTCTTTTGTCACAGTCATGTCTAGAAACGAGTTTTCTAAATTTATGGAATTGCCTCCAAATGTTGCTCGTGCTGTATCTTTGGCTGATCAATCGACTGTCATTGAAGATTCACAGGGGCTGCGATGGAATGTTGCAATCTCGAACGGTTCAGGCACCTGTGGTTGCTCAGATGCAGAGATAAGTAAACGGTTGGATGAAGTGAATGGCAAGGGGAAAGCTCCAATTACCACACAGTTTGCTTCAAATTGTGATGATAGAAAGGAAGCTGGCTCCGTTAACAGCCCGGTGGCTAAAGATGTAGGGAGTACAGTAATTCCTTCAGATGGATCCGAGTTGGAAAGGACTCTGAAAATTAGCGATCATGAAGTCAAGAAAATGAAGAGACCATCTCTGCTGCGTCAACCTGAGCTACAAAAAAATGCCGCACTGGCGATGGATCAGGCAAGTCGAGGTGAGGAAGCGATTTCAAGAGATCAGAGGCTCAAACCCGATCATCCCACTTTTGTTGTCATGATGCAAGAACCCTCCTACCTTACAACTGCTTTGAAAATTGATATAAACTTTGCCCAAAAATATAATTTATCGAGCCGCAATGTTAACCTACAGATTCCAAATGGGAGCACTTGGCCTGTTATTTGCTCTGTCACCAACATAGAAGAAGACGGAATCCGCTACACCAGAGAAGGAGTTGCAAGATACCGCTATCCCAGTTGGTGTATCAGAGAAGAAGTTGCAAGAATCCGCTATCGTGGTTGGATAAAATTTGCAACAGACAATGAGCTGCAAGTAGGGGGATACTTGTGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

299

Amino Acids

33.21

Weight (kDa)

6.9

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07280 FvH4_5g07280 FvH4_5g07280
malus_domestica	MD06G1157600.v1.1
prunus_persica	Prupe.5G155300_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0149271 RchiOBHm_Chr2g0149281 RchiOBHm_Chr7g0191351
rosa_laevigata	RLG00000004463 RLG00000020389
rosa_multiflora	Rmu_sc0004860.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438290 Rroxscaffold_2G00098250 Rroxscaffold_3G00263910
rosa_rugosa	Rorug02G0410000 Rorug02G0410100 Rorug06G0510100
rosa_samantha	Rh2AG471000 Rh2BG483200 Rh2CG456900 Rh2DG492200 Rh7AG117500 Rh7BG119400 Rh7CG122500 Rh7DG120600
rosa_wichuraiana	Rw2G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AciI	CCGC	5 cut(s)	513, 679, 760, 790, 832
AclWI	GGATC	3 cut(s)	411, 424, 534
AcsI	RAATTY	2 cut(s)	128, 851
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	5 cut(s)	16, 194, 333, 558, 637
AluBI	AGCT	5 cut(s)	20, 308, 356, 499, 871
AluI	AGCT	5 cut(s)	20, 308, 356, 499, 871
Alw21I	GWGCWC	1 cut(s)	713
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	3 cut(s)	411, 424, 534
AlwNI	CAGNNNCTG	1 cut(s)	208
AoxI	GGCC	1 cut(s)	716
ApeKI	GCWGC	3 cut(s)	208, 484, 871
ApoI	RAATTY	2 cut(s)	128, 851
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	3 cut(s)	69, 554, 727
BaeI	ACNNNNGTAYC	1 cut(s)	877
BamHI	GGATCC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	242
BauI	CACGAG	2 cut(s)	8, 156
BbsI	GAAGAC	1 cut(s)	756
Bbv12I	GWGCWC	1 cut(s)	713
BbvI	GCAGC	3 cut(s)	195, 471, 858
BccI	CCATC	4 cut(s)	207, 407, 484, 517
BciVI	GTATCC	1 cut(s)	878
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	692
BfuI	GTATCC	1 cut(s)	878
BglI	GCCNNNNNGGC	1 cut(s)	518
BisI	GCNGC	5 cut(s)	209, 485, 513, 679, 872
BlsI	GCNGC	5 cut(s)	210, 486, 514, 680, 873
Bme1390I	CCNGG	1 cut(s)	374
BmiI	GGNNCC	3 cut(s)	244, 361, 418
BmrFI	CCNGG	1 cut(s)	374
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	3 cut(s)	61, 250, 594
BmuI	ACTGGG	1 cut(s)	792
BpiI	GAAGAC	1 cut(s)	756
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
Bpu10I	CCTNAGC	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	2 cut(s)	522, 798
Bse3DI	GCAATG	1 cut(s)	688
BseGI	GGATG	2 cut(s)	289, 583
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	3 cut(s)	27, 270, 486
BseNI	ACTGG	2 cut(s)	522, 798
BseXI	GCAGC	3 cut(s)	195, 471, 858
BshFI	GGCC	1 cut(s)	718
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	713
BsiSI	CCGG	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	718
Bso31I	GGTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp143I	GATC	6 cut(s)	175, 416, 448, 526, 562, 580
BspACI	CCGC	5 cut(s)	513, 679, 760, 790, 832
BspANI	GGCC	1 cut(s)	718
BspCNI	CTCAG	3 cut(s)	28, 269, 487
BspHI	TCATGA	2 cut(s)	451, 600
BspLI	GGNNCC	3 cut(s)	244, 361, 418
BspPI	GGATC	3 cut(s)	411, 424, 534
BspT107I	GGYRCC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	466
BsrDI	GCAATG	1 cut(s)	688
BsrI	ACTGG	2 cut(s)	522, 798
BssMI	GATC	6 cut(s)	175, 416, 448, 526, 562, 580
BssSI	CACGAG	2 cut(s)	8, 156
Bst2BI	CACGAG	2 cut(s)	8, 156
Bst4CI	ACNGT	6 cut(s)	103, 187, 236, 279, 324, 400
Bst6I	CTCTTC	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	3 cut(s)	36, 256, 495
BstF5I	GGATG	2 cut(s)	289, 583
BstKTI	GATC	6 cut(s)	178, 419, 451, 529, 565, 583
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	6 cut(s)	175, 416, 448, 526, 562, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	1 cut(s)	692
BstV1I	GCAGC	3 cut(s)	195, 471, 858
BstV2I	GAAGAC	1 cut(s)	756
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	1 cut(s)	718
BtgZI	GCGATG	2 cut(s)	226, 536
BtsCI	GGATG	2 cut(s)	289, 583
BtsIMutI	CAGTG	2 cut(s)	33, 515
Cac8I	GCNNGC	1 cut(s)	358
CaiI	CAGNNNCTG	1 cut(s)	208
CciI	TCATGA	2 cut(s)	451, 600
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	396
CspCI	CAANNNNNGTGG	4 cut(s)	307, 342, 577, 612
CviAII	CATG	4 cut(s)	56, 106, 452, 601
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	3 cut(s)	36, 256, 495
DpnI	GATC	6 cut(s)	177, 418, 450, 528, 564, 582
DpnII	GATC	6 cut(s)	175, 416, 448, 526, 562, 580
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco31I	GGTCTC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	393
FaeI	CATG	4 cut(s)	59, 109, 455, 604
FaiI	YATR	9 cut(s)	57, 86, 107, 134, 453, 602, 647, 666, 743
FatI	CATG	4 cut(s)	55, 105, 451, 600
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	5 cut(s)	209, 485, 513, 679, 872
FokI	GGATG	2 cut(s)	296, 570
Fsp4HI	GCNGC	5 cut(s)	209, 485, 513, 679, 872
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	5 cut(s)	209, 485, 513, 679, 872
HaeIII	GGCC	1 cut(s)	718
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	1 cut(s)	476
Hin1II	CATG	4 cut(s)	59, 109, 455, 604
HincII	GTYRAC	3 cut(s)	367, 491, 688
HindII	GTYRAC	3 cut(s)	367, 491, 688
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	5 cut(s)	197, 433, 697, 756, 828
HpaI	GTTAAC	2 cut(s)	367, 688
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	3 cut(s)	69, 554, 727
Hpy166II	GTNNAC	4 cut(s)	275, 367, 491, 688
Hpy188I	TCNGA	6 cut(s)	259, 412, 421, 438, 567, 812
Hpy188III	TCNNGA	7 cut(s)	8, 111, 229, 452, 460, 558, 601
Hpy8I	GTNNAC	4 cut(s)	275, 367, 491, 688
HpyAV	CCTTC	2 cut(s)	417, 767
HpyCH4III	ACNGT	6 cut(s)	103, 187, 236, 279, 324, 400
HpyCH4V	TGCA	8 cut(s)	33, 224, 263, 607, 782, 824, 857, 874
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	3 cut(s)	36, 256, 495
Hsp92II	CATG	4 cut(s)	59, 109, 455, 604
Ksp22I	TGATCA	1 cut(s)	175
KspAI	GTTAAC	2 cut(s)	367, 688
Kzo9I	GATC	6 cut(s)	175, 416, 448, 526, 562, 580
LmnI	GCTCC	3 cut(s)	313, 365, 708
Lsp1109I	GCAGC	3 cut(s)	195, 471, 858
LweI	GCATC	3 cut(s)	61, 250, 594
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	5, 97, 733
MalI	GATC	6 cut(s)	177, 418, 450, 528, 564, 582
MboI	GATC	6 cut(s)	175, 416, 448, 526, 562, 580
MboII	GAAGA	5 cut(s)	206, 481, 758, 761, 827
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	713
MluCI	AATT	9 cut(s)	128, 137, 312, 334, 402, 441, 639, 667, 851
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	3 cut(s)	261, 405, 824
MnlI	CCTC	5 cut(s)	153, 533, 538, 561, 625
MseI	TTAA	2 cut(s)	366, 687
MslI	CAYNNNNRTG	1 cut(s)	104
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	518
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	6 cut(s)	175, 416, 448, 526, 562, 580
NlaIII	CATG	4 cut(s)	59, 109, 455, 604
NlaIV	GGNNCC	3 cut(s)	244, 361, 418
NmuCI	GTSAC	3 cut(s)	5, 97, 733
PagI	TCATGA	2 cut(s)	451, 600
PctI	GAATGC	1 cut(s)	35
PfeI	GAWTC	4 cut(s)	197, 697, 756, 828
PkrI	GCNGC	5 cut(s)	210, 486, 514, 680, 873
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PspN4I	GGNNCC	3 cut(s)	244, 361, 418
PstNI	CAGNNNCTG	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	366, 687
SatI	GCNGC	5 cut(s)	209, 485, 513, 679, 872
Sau3AI	GATC	6 cut(s)	175, 416, 448, 526, 562, 580
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	713
SfaNI	GCATC	3 cut(s)	61, 250, 594
SfcI	CTRYAG	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	104
Sse9I	AATT	9 cut(s)	128, 137, 312, 334, 402, 441, 639, 667, 851
SsiI	CCGC	5 cut(s)	513, 679, 760, 790, 832
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	6 cut(s)	103, 187, 236, 279, 324, 400
TaqI	TCGA	4 cut(s)	182, 230, 538, 674
TasI	AATT	9 cut(s)	128, 137, 312, 334, 402, 441, 639, 667, 851
TatI	WGTACW	1 cut(s)	395
TauI	GCSGC	2 cut(s)	515, 681
TfiI	GAWTC	4 cut(s)	197, 697, 756, 828
Tru1I	TTAA	2 cut(s)	366, 687
Tru9I	TTAA	2 cut(s)	366, 687
TscAI	CASTG	2 cut(s)	40, 522
TseFI	GTSAC	3 cut(s)	5, 97, 733
TseI	GCWGC	3 cut(s)	208, 484, 871
Tsp45I	GTSAC	3 cut(s)	5, 97, 733
TspDTI	ATGAA	4 cut(s)	44, 300, 468, 482
TspGWI	ACGGA	2 cut(s)	352, 768
TspRI	CASTG	2 cut(s)	40, 522
XapI	RAATTY	2 cut(s)	128, 851
XbaI	TCTAGA	1 cut(s)	110
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.