Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002691

Physical Location & Seq

Genomic Coordinates Reverse (-)

64510485 .. 64512468

Gene Structure 1984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020389

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGTCACGAGTTCAAAGCTTGTGTGCCATGCACTGAGAAGTGTTTGCTGGTTCATGGGAACAAGAGTGATGCTTCACCCGTCATAACTTCTTTTGTCACAGTCATGTCTGGAAAGGAGTTTTCTAAATTTATGGAATTGCCTCCAAATGTTGCTCGTGCTGTGTCTTTGGCTGATCAATTGACTGTCATTGAAGATTCACAGGGGCTGCGATGGAATGTTGCAATCTCGAGTATGGATGGCTCCTTTGCTTTTCATCATGGATGGAATGCTTTTTCATTAGATCATGACCTACAACTAGGAAATATTCTTGTCTTCACTTACATTAGGGGTTCACATTTTGCTGTTAAAATCTATGATAACTCTGGGTGTGAACTAAATTCTTTTGAGACCGATCAGAAGAAAAGAAAAAGGGATGACAGAGATTCTATTTTCAAAGGTGGTTGGTGCTACGCAACTGATAAAAGTTCAATGAGCAAAGACGGTTCAGGCACCTGTGGTTGCTCAGATGCAGAGATAAGTAAACGGTTGGATGAAGTGAATGGCAAGGGGAAAGCTCCAATTACCACACAGTTTGCTTCAAGTTGTGGTGATAGAAAGGAAGCTGGCTCCGTTAACAGCCCAGTGGCTAAAGATGTAGGGAGCACAGTAATTCCTTCAGATGGATCTGAGTTGGAAAGGACTCTGAAAATTAGCGATCATGAAGTCAAGGTAAAAAAGGAAGAACCTTCTGAAATACATTCATGCACCGAGACCTCTGGACAACACTTTTCAACACTTCTTGTAATTCCGGAAGAAAATGAAGAGACCATCTCTGCTGTTTCAACCAGAGCTACAAAAAAATGCCGCACTGCCGATGGATCAGGCAAGTCGTATGCAACTATGTGTGAGGAAGCGATTTCAAGAGATCAGAGGCTCAAACCCGATCATCCCACTTTTGTTAAACTTGATATAAACTTTGCCCAAAAATATAATTTATCGAGCCGCAATGTTAACCTACAGATTCCAAATGGGAGCACTTGGCCTGTTATTTGCTCTGTCACCAACAAAGAAGAAGATGGAATCCGCTACACCAGAGAAGGTGTTGCAAGATACCGCTATCCCAGTTGGTGTATCAGAGAAGAAGTTGCAAGAATCCGTTATCGTGGTTGGATAAAATTTGCAACAGACAATGGGCTGCAAGTAGGGGATACTTGTGTGTTTGAGATGATAAAGCAGCAGCCTGAAATAACGTTCTTAGTTCACATAATCCGAGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

421

Amino Acids

46.67

Weight (kDa)

6.44

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	32 - 121	6.9e-11	B3 DNA binding domain
B3	PF02362	319 - 419	2.2e-08	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07280 FvH4_5g07280 FvH4_5g07280
malus_domestica	MD06G1157600.v1.1
prunus_persica	Prupe.5G155300_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0149271 RchiOBHm_Chr2g0149281 RchiOBHm_Chr7g0191351
rosa_laevigata	RLG00000004463 RLG00000020389
rosa_multiflora	Rmu_sc0004860.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438290 Rroxscaffold_2G00098250 Rroxscaffold_3G00263910
rosa_rugosa	Rorug02G0410000 Rorug02G0410100 Rorug06G0510100
rosa_samantha	Rh2AG471000 Rh2BG483200 Rh2CG456900 Rh2DG492200 Rh7AG117500 Rh7BG119400 Rh7CG122500 Rh7DG120600
rosa_wichuraiana	Rw2G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	491
AccIII	TCCGGA	1 cut(s)	790
AciI	CCGC	4 cut(s)	847, 985, 1066, 1096
AclI	AACGTT	1 cut(s)	1232
AclWI	GGATC	2 cut(s)	673, 868
AcsI	RAATTY	3 cut(s)	128, 379, 1157
AcuI	CTGAAG	1 cut(s)	642
AfiI	CCNNNNNNNGG	1 cut(s)	662
AgsI	TTSAA	8 cut(s)	16, 194, 436, 471, 582, 774, 825, 903
AluBI	AGCT	5 cut(s)	20, 557, 605, 833, 1256
AluI	AGCT	5 cut(s)	20, 557, 605, 833, 1256
Alw21I	GWGCWC	2 cut(s)	647, 1019
Alw26I	GTCTC	3 cut(s)	383, 746, 800
AlwI	GGATC	2 cut(s)	673, 868
AlwNI	CAGNNNCTG	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	229
Aor13HI	TCCGGA	1 cut(s)	790
AoxI	GGCC	1 cut(s)	1022
ApeKI	GCWGC	4 cut(s)	208, 1177, 1216, 1219
ApoI	RAATTY	3 cut(s)	128, 379, 1157
AsuHPI	GGTGA	3 cut(s)	69, 602, 1033
AvaI	CYCGRG	1 cut(s)	229
BaeI	ACNNNNGTAYC	2 cut(s)	1182, 1215
BanI	GGYRCC	1 cut(s)	491
BauI	CACGAG	2 cut(s)	8, 156
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	2 cut(s)	647, 1019
BbvI	GCAGC	4 cut(s)	195, 1164, 1228, 1231
BccI	CCATC	7 cut(s)	207, 233, 258, 656, 818, 851, 1052
BciVI	GTATCC	1 cut(s)	1183
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	3 cut(s)	383, 746, 800
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	998
BfuI	GTATCC	1 cut(s)	1183
BisI	GCNGC	6 cut(s)	209, 847, 985, 1178, 1217, 1220
BlsI	GCNGC	6 cut(s)	210, 848, 986, 1179, 1218, 1221
BmeT110I	CYCGRG	1 cut(s)	229
BmiI	GGNNCC	3 cut(s)	244, 493, 610
BmrI	ACTGGG	2 cut(s)	617, 1098
BmsI	GCATC	2 cut(s)	61, 499
BmuI	ACTGGG	2 cut(s)	617, 1098
BpiI	GAAGAC	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	797, 829
BsaI	GGTCTC	3 cut(s)	383, 746, 800
BsaWI	WCCGGW	1 cut(s)	790
Bsc4I	CCNNNNNNNGG	1 cut(s)	662
Bse1I	ACTGG	2 cut(s)	623, 1104
Bse3DI	GCAATG	1 cut(s)	994
BseAI	TCCGGA	1 cut(s)	790
BseGI	GGATG	5 cut(s)	244, 269, 421, 538, 928
BseLI	CCNNNNNNNGG	1 cut(s)	662
BseMI	GCAATG	1 cut(s)	994
BseMII	CTCAG	3 cut(s)	27, 519, 660
BseNI	ACTGG	2 cut(s)	623, 1104
BseXI	GCAGC	4 cut(s)	195, 1164, 1228, 1231
BshFI	GGCC	1 cut(s)	1024
BshNI	GGYRCC	1 cut(s)	491
BsiHKAI	GWGCWC	2 cut(s)	647, 1019
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	791
BslI	CCNNNNNNNGG	1 cut(s)	662
BsmAI	GTCTC	3 cut(s)	383, 746, 800
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	1024
Bso31I	GGTCTC	3 cut(s)	383, 746, 800
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	647, 1019
Bsp13I	TCCGGA	1 cut(s)	790
Bsp143I	GATC	8 cut(s)	175, 283, 394, 665, 697, 860, 907, 925
BspACI	CCGC	4 cut(s)	847, 985, 1066, 1096
BspANI	GGCC	1 cut(s)	1024
BspCNI	CTCAG	3 cut(s)	28, 518, 661
BspEI	TCCGGA	1 cut(s)	790
BspHI	TCATGA	2 cut(s)	286, 700
BspLI	GGNNCC	3 cut(s)	244, 493, 610
BspPI	GGATC	2 cut(s)	673, 868
BspT107I	GGYRCC	1 cut(s)	491
BspTNI	GGTCTC	3 cut(s)	383, 746, 800
BsrDI	GCAATG	1 cut(s)	994
BsrI	ACTGG	2 cut(s)	623, 1104
BssMI	GATC	8 cut(s)	175, 283, 394, 665, 697, 860, 907, 925
BssSI	CACGAG	2 cut(s)	8, 156
Bst2BI	CACGAG	2 cut(s)	8, 156
Bst4CI	ACNGT	6 cut(s)	103, 187, 485, 528, 573, 649
Bst6I	CTCTTC	1 cut(s)	798
BstC8I	GCNNGC	1 cut(s)	607
BstDEI	CTNAG	4 cut(s)	36, 505, 669, 1237
BstF5I	GGATG	5 cut(s)	244, 269, 421, 538, 928
BstKTI	GATC	8 cut(s)	178, 286, 397, 668, 700, 863, 910, 928
BstMAI	GTCTC	3 cut(s)	383, 746, 800
BstMBI	GATC	8 cut(s)	175, 283, 394, 665, 697, 860, 907, 925
BstSFI	CTRYAG	1 cut(s)	998
BstV1I	GCAGC	4 cut(s)	195, 1164, 1228, 1231
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	665
BsuI	GTATCC	1 cut(s)	1183
BsuRI	GGCC	1 cut(s)	1024
BtgZI	GCGATG	1 cut(s)	226
BtsCI	GGATG	5 cut(s)	244, 269, 421, 538, 928
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	3 cut(s)	33, 630, 849
Cac8I	GCNNGC	1 cut(s)	607
CaiI	CAGNNNCTG	1 cut(s)	208
CciI	TCATGA	2 cut(s)	286, 700
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviAII	CATG	7 cut(s)	30, 56, 106, 260, 287, 701, 744
DdeI	CTNAG	4 cut(s)	36, 505, 669, 1237
DpnI	GATC	8 cut(s)	177, 285, 396, 667, 699, 862, 909, 927
DpnII	GATC	8 cut(s)	175, 283, 394, 665, 697, 860, 907, 925
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Eco31I	GGTCTC	3 cut(s)	383, 746, 800
Eco57I	CTGAAG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	229
FaeI	CATG	7 cut(s)	33, 59, 109, 263, 290, 704, 747
FatI	CATG	7 cut(s)	29, 55, 105, 259, 286, 700, 743
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	6 cut(s)	209, 847, 985, 1178, 1217, 1220
FokI	GGATG	5 cut(s)	251, 276, 428, 545, 915
Fsp4HI	GCNGC	6 cut(s)	209, 847, 985, 1178, 1217, 1220
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	6 cut(s)	209, 847, 985, 1178, 1217, 1220
HaeIII	GGCC	1 cut(s)	1024
HapII	CCGG	1 cut(s)	791
Hin1II	CATG	7 cut(s)	33, 59, 109, 263, 290, 704, 747
HincII	GTYRAC	2 cut(s)	616, 994
HindII	GTYRAC	2 cut(s)	616, 994
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	6 cut(s)	197, 425, 682, 1003, 1062, 1134
HpaI	GTTAAC	2 cut(s)	616, 994
HpaII	CCGG	1 cut(s)	791
HphI	GGTGA	3 cut(s)	69, 602, 1033
Hpy166II	GTNNAC	6 cut(s)	335, 374, 524, 616, 994, 1243
Hpy188I	TCNGA	9 cut(s)	399, 508, 661, 670, 687, 733, 912, 1118, 1253
Hpy188III	TCNNGA	8 cut(s)	8, 111, 229, 287, 701, 759, 791, 903
Hpy8I	GTNNAC	6 cut(s)	335, 374, 524, 616, 994, 1243
HpyAV	CCTTC	3 cut(s)	666, 738, 1073
HpyCH4III	ACNGT	6 cut(s)	103, 187, 485, 528, 573, 649
HpyCH4IV	ACGT	1 cut(s)	1232
HpyCH4V	TGCA	9 cut(s)	33, 224, 512, 747, 878, 1088, 1130, 1163, 1180
HpyF3I	CTNAG	4 cut(s)	36, 505, 669, 1237
HpySE526I	ACGT	1 cut(s)	1232
Hsp92II	CATG	7 cut(s)	33, 59, 109, 263, 290, 704, 747
Kpn2I	TCCGGA	1 cut(s)	790
Ksp22I	TGATCA	1 cut(s)	175
KspAI	GTTAAC	2 cut(s)	616, 994
Kzo9I	GATC	8 cut(s)	175, 283, 394, 665, 697, 860, 907, 925
LmnI	GCTCC	5 cut(s)	248, 562, 614, 642, 1014
Lsp1109I	GCAGC	4 cut(s)	195, 1164, 1228, 1231
LweI	GCATC	2 cut(s)	61, 499
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	1232
MaeIII	GTNAC	3 cut(s)	5, 97, 1039
MalI	GATC	8 cut(s)	177, 285, 396, 667, 699, 862, 909, 927
MboI	GATC	8 cut(s)	175, 283, 394, 665, 697, 860, 907, 925
MboII	GAAGA	9 cut(s)	206, 307, 412, 734, 806, 815, 1064, 1067, 1133
MfeI	CAATTG	1 cut(s)	179
MflI	RGATCY	1 cut(s)	665
MhlI	GDGCHC	2 cut(s)	647, 1019
MlyI	GAGTC	1 cut(s)	676
MmeI	TCCRAC	3 cut(s)	510, 654, 1130
MnlI	CCTC	4 cut(s)	153, 766, 883, 906
MroI	TCCGGA	1 cut(s)	790
MseI	TTAA	5 cut(s)	348, 615, 942, 993, 1261
MslI	CAYNNNNRTG	1 cut(s)	104
MspI	CCGG	1 cut(s)	791
MunI	CAATTG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	274
NdeII	GATC	8 cut(s)	175, 283, 394, 665, 697, 860, 907, 925
NlaIII	CATG	7 cut(s)	33, 59, 109, 263, 290, 704, 747
NlaIV	GGNNCC	3 cut(s)	244, 493, 610
NmuCI	GTSAC	3 cut(s)	5, 97, 1039
PaeR7I	CTCGAG	1 cut(s)	229
PagI	TCATGA	2 cut(s)	286, 700
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	5 cut(s)	197, 425, 1003, 1062, 1134
PkrI	GCNGC	6 cut(s)	210, 848, 986, 1179, 1218, 1221
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
Psp1406I	AACGTT	1 cut(s)	1232
PspN4I	GGNNCC	3 cut(s)	244, 493, 610
PstNI	CAGNNNCTG	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	665
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	5 cut(s)	348, 615, 942, 993, 1261
SatI	GCNGC	6 cut(s)	209, 847, 985, 1178, 1217, 1220
Sau3AI	GATC	8 cut(s)	175, 283, 394, 665, 697, 860, 907, 925
SchI	GAGTC	1 cut(s)	676
SduI	GDGCHC	2 cut(s)	647, 1019
SfaNI	GCATC	2 cut(s)	61, 499
SfcI	CTRYAG	1 cut(s)	998
Sfr274I	CTCGAG	1 cut(s)	229
SlaI	CTCGAG	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
SsiI	CCGC	4 cut(s)	847, 985, 1066, 1096
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	1 cut(s)	299
TaaI	ACNGT	6 cut(s)	103, 187, 485, 528, 573, 649
TaiI	ACGT	1 cut(s)	1235
TaqI	TCGA	2 cut(s)	230, 980
TaqII	GACCGA	1 cut(s)	407
TauI	GCSGC	2 cut(s)	849, 987
TfiI	GAWTC	5 cut(s)	197, 425, 1003, 1062, 1134
Tru1I	TTAA	5 cut(s)	348, 615, 942, 993, 1261
Tru9I	TTAA	5 cut(s)	348, 615, 942, 993, 1261
TscAI	CASTG	3 cut(s)	40, 630, 856
TseFI	GTSAC	3 cut(s)	5, 97, 1039
TseI	GCWGC	4 cut(s)	208, 1177, 1216, 1219
Tsp45I	GTSAC	3 cut(s)	5, 97, 1039
TspDTI	ATGAA	7 cut(s)	44, 245, 267, 549, 717, 732, 816
TspGWI	ACGGA	2 cut(s)	601, 1127
TspRI	CASTG	3 cut(s)	40, 630, 856
XapI	RAATTY	3 cut(s)	128, 379, 1157
XhoI	CTCGAG	1 cut(s)	229
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.