Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002691

Physical Location & Seq

Genomic Coordinates Reverse (-)

62039901 .. 62044023

Gene Structure 4123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG456900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGTATCTTGCAGGTGTAACAATATTCATCCAAACAGGAACAGAGATGGGTCACGAATTCAAAGCTTGTGTGGAATGCACTGAGAAGTGTTTGCTGGTTCACGGGAACAAGAGTGATGCTTCACCTGTCATAACTTCCTTTGTCACAGTCATGTCTGGAAACGAGTTTTCTAAATTTATGGAATTGCCTCCAAATGTTGCTCGTGCTGTGTCTTTGGCTGATCAATCGACTGTCATTGAAGATTCACAGGGGCTGCGATGGAACGTTGCAATCTCAAGTATGGATGGCTCCTTTGCTTTTCATCATGGATGGAATGCTTTTTCATTAGATCATGACCTACAACTAGGAAATATTCTGGTCTTCACTTACATTAGGGGTTCACATTTTGCTGTTAAAATCTATGATAACTCTGGGTGTGAACTAAGTTCTTTTGAGACCGATCAGAAGAAAAGAAAAAGGGATGACAGAGATTCTATTTTCAAAGGTGGTTGGTGCTATGCAACTGATAAAAGTTCAATGAGCAAAGACGGTTCAGGCACCTGTGGTTGCTCAGATGCAGAGATAAGTAAACGGTTGGATGAAGTGAATGGCAAGGGGAAAGCTCCAATCACCACACAGTTTGCTTCAAATTGTGATGATAGAAAGGAAGCTGGCTCCGTTAACAGCCCAGTGGCTAAAGATGTAGGGAGTACAGTAATTCCTTCAGATGGATCTGAGTTGGAAAGGACACTGAAAAATAGCGATCATGAAGTCAAGGTAAAAAAGGAAGAACCTTCTGAAATACATTCATGCACCGAGACCTCTGGAAAACTCTTATCAACACTTACTGTAATTCCGGAAGAAAATGAAGAGATCATCTCTGCTGTGTCAACCAGAGCTACAAAAAAATGCCGCACTGGCGATGGATCAGGAGGTGAGGAAGCGATTTCAAGAGATCAGAGGCTCAAACCCGATCATCCCACTTTTGTTGTCATGATGCAAGAACCCTCCTACCTTACAACTGCCTTGAAAATTGATATAAACTTTGCCCTAAAATATAATTTATCGAGCCGCAATGTTAACCTACAGATTCCAAATGGGAGCACTTGGCCTGTTATTTGCTCTGTCACCAACAAAGAAGAAGACGGAATCCGCTACACCAGAGAAGGAGTTGCAAGAAACCGCTATCCCAGTTGGTGTATCAGAGAAGAAGTTGCAAGAATCCGCTATCGTGGTTGGATAAAATTTGCAACAGACAATGGGCTGCAAGTAGGGGATACTTGTGTGTTTGAGATGATAAAGCAGCAGCCTGAAATAACGTTCTTAGTTCACATAATCCGAGCTACTTACGCTACTAAGCTCCATTTCAACAATATTTCCCAGAACATGAAGTTACGAAGAATTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

462

Amino Acids

51.38

Weight (kDa)

6.3

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	47 - 136	1.7e-11	B3 DNA binding domain
B3	PF02362	323 - 441	4.4e-09	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07280 FvH4_5g07280 FvH4_5g07280
malus_domestica	MD06G1157600.v1.1
prunus_persica	Prupe.5G155300_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0149271 RchiOBHm_Chr2g0149281 RchiOBHm_Chr7g0191351
rosa_laevigata	RLG00000004463 RLG00000020389
rosa_multiflora	Rmu_sc0004860.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438290 Rroxscaffold_2G00098250 Rroxscaffold_3G00263910
rosa_rugosa	Rorug02G0410000 Rorug02G0410100 Rorug06G0510100
rosa_samantha	Rh2AG471000 Rh2BG483200 Rh2CG456900 Rh2DG492200 Rh7AG117500 Rh7BG119400 Rh7CG122500 Rh7DG120600
rosa_wichuraiana	Rw2G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2
Acc36I	ACCTGC	1 cut(s)	2
AccB1I	GGYRCC	1 cut(s)	536
AccIII	TCCGGA	1 cut(s)	835
AciI	CCGC	5 cut(s)	892, 1051, 1132, 1162, 1204
AclI	AACGTT	2 cut(s)	264, 1298
AclWI	GGATC	2 cut(s)	718, 913
AcsI	RAATTY	4 cut(s)	56, 173, 1223, 1380
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	1 cut(s)	691
AfiI	CCNNNNNNNGG	1 cut(s)	707
AgsI	TTSAA	8 cut(s)	61, 239, 481, 516, 627, 930, 1009, 1348
AluBI	AGCT	6 cut(s)	65, 602, 650, 878, 1322, 1339
AluI	AGCT	6 cut(s)	65, 602, 650, 878, 1322, 1339
Alw21I	GWGCWC	1 cut(s)	1085
Alw26I	GTCTC	2 cut(s)	428, 791
AlwI	GGATC	2 cut(s)	718, 913
AlwNI	CAGNNNCTG	1 cut(s)	253
Aor13HI	TCCGGA	1 cut(s)	835
AoxI	GGCC	1 cut(s)	1088
ApeKI	GCWGC	4 cut(s)	253, 1243, 1282, 1285
ApoI	RAATTY	4 cut(s)	56, 173, 1223, 1380
AsuHPI	GGTGA	4 cut(s)	114, 601, 926, 1099
BaeI	ACNNNNGTAYC	2 cut(s)	1248, 1281
BanI	GGYRCC	1 cut(s)	536
BauI	CACGAG	1 cut(s)	201
BbsI	GAAGAC	2 cut(s)	352, 1128
Bbv12I	GWGCWC	1 cut(s)	1085
BbvI	GCAGC	4 cut(s)	240, 1230, 1294, 1297
BccI	CCATC	6 cut(s)	40, 252, 278, 303, 701, 896
BciVI	GTATCC	1 cut(s)	1249
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	428, 791
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	1064
BfuAI	ACCTGC	1 cut(s)	2
BfuI	GTATCC	1 cut(s)	1249
BglI	GCCNNNNNGGC	1 cut(s)	897
BisI	GCNGC	6 cut(s)	254, 892, 1051, 1244, 1283, 1286
BlsI	GCNGC	6 cut(s)	255, 893, 1052, 1245, 1284, 1287
BmiI	GGNNCC	3 cut(s)	289, 538, 655
BmrI	ACTGGG	2 cut(s)	662, 1164
BmsI	GCATC	3 cut(s)	106, 544, 966
BmuI	ACTGGG	2 cut(s)	662, 1164
BpiI	GAAGAC	2 cut(s)	352, 1128
BplI	GAGNNNNNCTC	2 cut(s)	842, 874
BpuEI	CTTGAG	1 cut(s)	259
BsaI	GGTCTC	2 cut(s)	428, 791
BsaWI	WCCGGW	1 cut(s)	835
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse1I	ACTGG	3 cut(s)	668, 901, 1170
Bse3DI	GCAATG	1 cut(s)	1060
BseAI	TCCGGA	1 cut(s)	835
BseGI	GGATG	6 cut(s)	27, 289, 314, 466, 583, 955
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMI	GCAATG	1 cut(s)	1060
BseMII	CTCAG	3 cut(s)	72, 564, 705
BseNI	ACTGG	3 cut(s)	668, 901, 1170
BseXI	GCAGC	4 cut(s)	240, 1230, 1294, 1297
BshFI	GGCC	1 cut(s)	1090
BshNI	GGYRCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	1085
BsiSI	CCGG	1 cut(s)	836
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	2 cut(s)	428, 791
BsmI	GAATGC	2 cut(s)	80, 319
BsnI	GGCC	1 cut(s)	1090
Bso31I	GGTCTC	2 cut(s)	428, 791
Bsp1286I	GDGCHC	1 cut(s)	1085
Bsp13I	TCCGGA	1 cut(s)	835
Bsp143I	GATC	9 cut(s)	220, 328, 439, 710, 742, 852, 905, 934, 952
BspACI	CCGC	5 cut(s)	892, 1051, 1132, 1162, 1204
BspANI	GGCC	1 cut(s)	1090
BspCNI	CTCAG	3 cut(s)	73, 563, 706
BspEI	TCCGGA	1 cut(s)	835
BspHI	TCATGA	3 cut(s)	331, 745, 972
BspLI	GGNNCC	3 cut(s)	289, 538, 655
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	2 cut(s)	718, 913
BspT107I	GGYRCC	1 cut(s)	536
BspTNI	GGTCTC	2 cut(s)	428, 791
BsrDI	GCAATG	1 cut(s)	1060
BsrI	ACTGG	3 cut(s)	668, 901, 1170
BssMI	GATC	9 cut(s)	220, 328, 439, 710, 742, 852, 905, 934, 952
BssSI	CACGAG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	201
Bst4CI	ACNGT	7 cut(s)	148, 232, 530, 573, 618, 694, 829
Bst6I	CTCTTC	1 cut(s)	843
BstC8I	GCNNGC	1 cut(s)	652
BstDEI	CTNAG	6 cut(s)	81, 422, 550, 714, 1303, 1335
BstF5I	GGATG	6 cut(s)	27, 289, 314, 466, 583, 955
BstKTI	GATC	9 cut(s)	223, 331, 442, 713, 745, 855, 908, 937, 955
BstMAI	GTCTC	2 cut(s)	428, 791
BstMBI	GATC	9 cut(s)	220, 328, 439, 710, 742, 852, 905, 934, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	897, 1328
BstSFI	CTRYAG	1 cut(s)	1064
BstV1I	GCAGC	4 cut(s)	240, 1230, 1294, 1297
BstV2I	GAAGAC	2 cut(s)	352, 1128
BstX2I	RGATCY	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	710
BsuI	GTATCC	1 cut(s)	1249
BsuRI	GGCC	1 cut(s)	1090
BtgZI	GCGATG	2 cut(s)	271, 915
BtsCI	GGATG	6 cut(s)	27, 289, 314, 466, 583, 955
BtsIMutI	CAGTG	4 cut(s)	78, 675, 728, 894
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	1 cut(s)	652
CaiI	CAGNNNCTG	1 cut(s)	253
CciI	TCATGA	3 cut(s)	331, 745, 972
Csp6I	GTAC	1 cut(s)	690
CspCI	CAANNNNNGTGG	4 cut(s)	601, 636, 949, 984
CviAII	CATG	7 cut(s)	151, 305, 332, 746, 789, 973, 1366
CviQI	GTAC	1 cut(s)	690
DdeI	CTNAG	6 cut(s)	81, 422, 550, 714, 1303, 1335
DpnI	GATC	9 cut(s)	222, 330, 441, 712, 744, 854, 907, 936, 954
DpnII	GATC	9 cut(s)	220, 328, 439, 710, 742, 852, 905, 934, 952
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
Eco31I	GGTCTC	2 cut(s)	428, 791
Eco57I	CTGAAG	1 cut(s)	687
EcoRI	GAATTC	2 cut(s)	56, 1380
FaeI	CATG	7 cut(s)	154, 308, 335, 749, 792, 976, 1369
FatI	CATG	7 cut(s)	150, 304, 331, 745, 788, 972, 1365
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	6 cut(s)	254, 892, 1051, 1244, 1283, 1286
FokI	GGATG	6 cut(s)	14, 296, 321, 473, 590, 942
Fsp4HI	GCNGC	6 cut(s)	254, 892, 1051, 1244, 1283, 1286
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	6 cut(s)	254, 892, 1051, 1244, 1283, 1286
HaeIII	GGCC	1 cut(s)	1090
HapII	CCGG	1 cut(s)	836
Hin1II	CATG	7 cut(s)	154, 308, 335, 749, 792, 976, 1369
HincII	GTYRAC	3 cut(s)	661, 870, 1060
HindII	GTYRAC	3 cut(s)	661, 870, 1060
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	5 cut(s)	242, 470, 1069, 1128, 1200
HpaI	GTTAAC	2 cut(s)	661, 1060
HpaII	CCGG	1 cut(s)	836
HphI	GGTGA	4 cut(s)	114, 601, 926, 1099
Hpy166II	GTNNAC	8 cut(s)	100, 380, 419, 569, 661, 870, 1060, 1309
Hpy188I	TCNGA	8 cut(s)	444, 553, 706, 715, 778, 939, 1184, 1319
Hpy188III	TCNNGA	9 cut(s)	53, 156, 332, 746, 804, 836, 909, 930, 973
Hpy8I	GTNNAC	8 cut(s)	100, 380, 419, 569, 661, 870, 1060, 1309
HpyAV	CCTTC	3 cut(s)	711, 783, 1139
HpyCH4III	ACNGT	7 cut(s)	148, 232, 530, 573, 618, 694, 829
HpyCH4IV	ACGT	2 cut(s)	264, 1298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	897, 1328
HpyF3I	CTNAG	6 cut(s)	81, 422, 550, 714, 1303, 1335
HpySE526I	ACGT	2 cut(s)	264, 1298
Hsp92II	CATG	7 cut(s)	154, 308, 335, 749, 792, 976, 1369
Kpn2I	TCCGGA	1 cut(s)	835
Ksp22I	TGATCA	1 cut(s)	220
KspAI	GTTAAC	2 cut(s)	661, 1060
Kzo9I	GATC	9 cut(s)	220, 328, 439, 710, 742, 852, 905, 934, 952
LmnI	GCTCC	5 cut(s)	293, 607, 659, 1080, 1344
Lsp1109I	GCAGC	4 cut(s)	240, 1230, 1294, 1297
LweI	GCATC	3 cut(s)	106, 544, 966
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	2 cut(s)	264, 1298
MaeIII	GTNAC	5 cut(s)	16, 50, 142, 1105, 1371
MalI	GATC	9 cut(s)	222, 330, 441, 712, 744, 854, 907, 936, 954
MboI	GATC	9 cut(s)	220, 328, 439, 710, 742, 852, 905, 934, 952
MflI	RGATCY	1 cut(s)	710
MhlI	GDGCHC	1 cut(s)	1085
MmeI	TCCRAC	3 cut(s)	555, 699, 1196
MnlI	CCTC	6 cut(s)	198, 811, 905, 910, 933, 997
MroI	TCCGGA	1 cut(s)	835
MseI	TTAA	3 cut(s)	393, 660, 1059
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	1 cut(s)	836
Mva1269I	GAATGC	2 cut(s)	80, 319
MwoI	GCNNNNNNNGC	2 cut(s)	897, 1328
NdeII	GATC	9 cut(s)	220, 328, 439, 710, 742, 852, 905, 934, 952
NlaIII	CATG	7 cut(s)	154, 308, 335, 749, 792, 976, 1369
NlaIV	GGNNCC	3 cut(s)	289, 538, 655
NmuCI	GTSAC	3 cut(s)	50, 142, 1105
PagI	TCATGA	3 cut(s)	331, 745, 972
PaqCI	CACCTGC	1 cut(s)	2
PctI	GAATGC	2 cut(s)	80, 319
PfeI	GAWTC	5 cut(s)	242, 470, 1069, 1128, 1200
PkrI	GCNGC	6 cut(s)	255, 893, 1052, 1245, 1284, 1287
Psp1406I	AACGTT	2 cut(s)	264, 1298
PspN4I	GGNNCC	3 cut(s)	289, 538, 655
PstNI	CAGNNNCTG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	710
RsaI	GTAC	1 cut(s)	691
RsaNI	GTAC	1 cut(s)	690
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	393, 660, 1059
SatI	GCNGC	6 cut(s)	254, 892, 1051, 1244, 1283, 1286
Sau3AI	GATC	9 cut(s)	220, 328, 439, 710, 742, 852, 905, 934, 952
SduI	GDGCHC	1 cut(s)	1085
SfaNI	GCATC	3 cut(s)	106, 544, 966
SfcI	CTRYAG	1 cut(s)	1064
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
SsiI	CCGC	5 cut(s)	892, 1051, 1132, 1162, 1204
SspI	AATATT	3 cut(s)	24, 352, 1354
SspMI	CTAG	1 cut(s)	344
TaaI	ACNGT	7 cut(s)	148, 232, 530, 573, 618, 694, 829
TaiI	ACGT	2 cut(s)	267, 1301
TaqI	TCGA	2 cut(s)	227, 1046
TaqII	GACCGA	1 cut(s)	452
TatI	WGTACW	1 cut(s)	689
TauI	GCSGC	2 cut(s)	894, 1053
TfiI	GAWTC	5 cut(s)	242, 470, 1069, 1128, 1200
Tru1I	TTAA	3 cut(s)	393, 660, 1059
Tru9I	TTAA	3 cut(s)	393, 660, 1059
TscAI	CASTG	4 cut(s)	85, 675, 735, 901
TseFI	GTSAC	3 cut(s)	50, 142, 1105
TseI	GCWGC	4 cut(s)	253, 1243, 1282, 1285
Tsp45I	GTSAC	3 cut(s)	50, 142, 1105
TspDTI	ATGAA	8 cut(s)	16, 290, 312, 594, 762, 777, 861, 1382
TspGWI	ACGGA	3 cut(s)	646, 1140, 1374
TspRI	CASTG	4 cut(s)	85, 675, 735, 901
XapI	RAATTY	4 cut(s)	56, 173, 1223, 1380
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.