Rh7CG122500

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002691
Physical Location & Seq
Reverse (-)
9462997 .. 9469928
6932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG122500.1

Sequence Viewer

Length: 3144 bp
ATGGAAAGTCATTGTCTCAATCATATTAGCTTGGTCCTTTCAGAAGACAAACTGATTATATCATCAACAAGTCATGGTTGTGTTTATCTTACTTTATCTTCCACCATTTTGAGGGTAGCAATAATCAACCGAGCACCGGAAGAGATGGTTCATGATTTCGAAGCTTGTGCAGATTGCACTCAGAAGTGTTTGCTGATTCATGGGAATAAGAAAAGTGGTTCCCATATCGAAACCTCTTTTTTCAAAATCATGTTTGGAAAACAGTTTTCTAAATTTATGGAATTGCCTCCAAAAGTTGCTCGTATTTTGTTATTGTCTGATCGGAGAACTTTTCTTGAAGATTCACGTGAACTGCGGTGGAAAGTTGCAATATCTAGTGTTAATGGTTCCTGGGCCTTTCAACAAGGATGGAATGCTTTTGCACTAGACCATGACCTACAAGTAGGAGATTTTCTGGTCTTCAATTATGTTGTGGGTTCACATTTTACTGTTAAGATATATGACAACTCTGGGTGTGAAGTGAATCTTTTTGAGACCATACATCAGAACAACAGAAATAGGGTTCACACAGATGGTCAGTGCCACACCATTGGTAAAAGTACAGTGAGCAAATCCGTTTCAGATACCTTTGCTGGTCCAGATGCAGAAATAAGTAAATGCTTGAATGAAGTGCATGGTATGAAGAAACCTCTAATTATCACAGAAAATGCTTCAGATCACGATGATGATTATGAAAGGTCAAAGGGCAAGCGCAAAGCAGAATTTGCTGACGACATGTCATGTATGATGGAAAGAGAATATGGACACCAACAAGGAGAGAACAGAGCCCGTATTCTTGATTTGTCTAGTTTTGAATCATTCAAAAAGATAAAAACCTGTGGCAGTGATGGAAGCAATAAAGTTGCTGCAGTGAATGAAACACATTCTCATCATGCTGATTCATCACTGAAATTGAGAAATGAAGTTAGCTCAGTTAAAATTCCAGTGGCTAAAGAGTTGGTGGATAGAGTAATTCCTTCAGATGCATCTGAGATTGAAAGGACTCAGAAAAATAACTATTCTGAATACAAGGTAAAGGGGGCACCCCTGTCTGATAAAGATTCATCCACCAATGTGACCTCTGGACATCTCTTTCCAACAGTTCCTGAAAATCCTGAACAAAAGGAAGAGATCTTCTCTGGTATTTCGAACAGAGCAGCCAAAAAATGCCAGTCTGCTAATGTATCACGCAATGATCATCAGGTAGCAGTATCAGGAAATGAACATGATTTGATTGATGACACTTGTCAAAGTGCCAACAAAAAAATTACTGAAATTTCAAAGTCCTGCGATAAAGTGATGAAGGTCATTGAAAACAAGCCTGTGGAGTTGACTTCACATCCATGCGGTCAGGAGGTCATTCCAGAAAGTAATGATATTGTGATGATGAACATTGGAAAAGAGTCTGTGGATTTGACTTCAGATCCATGCAGTCGGGGGGTCATTCCAGAAAGAAAGGATAAAGCTGGGACCATCATTGAAAATGTTATTGTGGACTTGACTTCAGATCAATGCAGTCAGGAGGTCATTGAAAAAGAGGAATCATTAGATCTTTCCACCAAGGTTGGAATACAAATTCCTTCAGGTCCAGCTGAGTTTGAAAGGACTGAGGAATGTAACAAATCTGAAGCCAAGGTCAATAGGGTGCCGTCTGATAAAGATTCATGCACTGAGACCTCTGGGCATCCCTTCCCAACACATTCTGAAAATCCTGAAGAAAATGGAGAGACCACCTCAAAGAAAGCAACAAAAGAATGCCGGAATGCTGATGGATCAGAATTATTATCAGGCAAGGATCAGGTGGTACTATCACAAAAGGAACCTGATTTAATGTATGCTAGTTCCCCAAGAGACAACAAGAAATTGACTGGGATTTCAGAGTCTATTCATAATCCCCTTAATTTTGAATGCCAAAATTATGATGTGATCATCAACGAGAAGGAGTCTGTTGAGGTGACTTGTCAGGAGGCCATTCCACAGAGAAAGGATAATATCATTGAAAACAAGTCTGTTGAGGTGACTTTAGAACCATGCAGCCAGGAGGTTATTCCAGAAAGAAAAGATACAATCGTCATTGGAGAAGAGTCTGTTGATTTGACTTTAGATCCAAGCTGTCAAGAGTTCATTCCAGAAACAAAGGGGGAATCATTAAAGGTTTTCAACAGGGTACACAGACAGCGTGCTAGTACAAATATAAGAGTAGTTCCTTCAGATGCATCTGACCTTGAAAGGACTGAGAAAAGAAATTGTTCTGAAGTTAAGGTCAGAAAGGTATCAACTTCTGATAAAGTTTCACACACCAAGCAGACCTCTTGTCATCTCAACCCAATACGTCATGTACATGTTGAAGAAGATAAAACAAACATCCCTAAGATTTCAAACAGAGGAATAAACAAACTTAAGACTACTGATGGATCAGTGGCTGCATACCAAAAGGAACAAGTTTCTATCGATGACAGCTGCCAACAAGCCAAAAAGAAATTTACTGGAATTTCAAATTCTTTTGAAGCTCCGGTTACTTCTGGATCCCAATATTATTCAGCTAAAATGTCAAAGATCATGGAAAAGGAGTTTGAAAACTCCAGTTCAGATCCATGCAGTCAGGAGATTATTCCAGAAGTTGATGCCCTATCATCAAAGATCTCTAACAAGTTGCAGAGTCAGAGTAATTTTGCAAGAAAAAATGACAGCGCTTTTTCAGTGGTAAAACCTGAACCCATTGAAGATGCAGGTGCAACCTTTCCAAGTTTCACAATCTCCTGTTTGGCAACTGACCGTCAATCTTTTCTGGAGTTGCCAAAGAGTTTGCCATTACCCTTGAACACCATGAAGGGAAGGTCTAAACTGGATAGGAGGATAGTTTATCTTCAAGGTCCTGATAAGAGATTGTGGCCAGTCCTCTACATTCAGAAATTTTTCTTCAGAACTTTGGCAAATGGTTGGGAGGCTTTCAGCATGGCAAATAATATTGAACAAGGAGATCGATGTACTATTGAGGTCACAAATCAAACTGAAGGCATATGTAGTGTGCACATAGTTAAGATGAGAGATGATATGGAATTCTATGAAGAGTATGAGCACAGTCCTCTCATTGACCTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

1047

Amino Acids

117.06

Weight (kDa)

5.57

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 80 - 169 6e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2759
Acc36I ACCTGC 1 cut(s) 2759
AccB1I GGYRCC 2 cut(s) 1081, 1684
AciI CCGC 2 cut(s) 355, 1386
AclWI GGATC 8 cut(s) 1457, 1819, 1842, 2138, 2461, 2559, 2572, 2624
AcoI YGGCCR 1 cut(s) 2930
AcvI CACGTG 1 cut(s) 347
AfaI GTAC 6 cut(s) 601, 1845, 2208, 2227, 2379, 3028
AfeI AGCGCT 1 cut(s) 2731
AfiI CCNNNNNNNGG 2 cut(s) 111, 136
AflII CTTAAG 1 cut(s) 2438
AflIII ACRYGT 2 cut(s) 774, 2380
AhdI GACNNNNNGTC 2 cut(s) 775, 2352
AjnI CCWGG 2 cut(s) 389, 2076
AleI CACNNNNGTG 1 cut(s) 1112
AluBI AGCT 9 cut(s) 30, 164, 969, 1505, 1631, 2151, 2499, 2549, 2582
AluI AGCT 9 cut(s) 30, 164, 969, 1505, 1631, 2151, 2499, 2549, 2582
Alw21I GWGCWC 3 cut(s) 136, 3072, 3120
Alw26I GTCTC 5 cut(s) 20, 527, 1706, 1760, 1884
Alw44I GTGCAC 1 cut(s) 3068
AlwI GGATC 8 cut(s) 1457, 1819, 1842, 2138, 2461, 2559, 2572, 2624
AlwNI CAGNNNCTG 2 cut(s) 1145, 2462
Aor51HI AGCGCT 1 cut(s) 2731
AoxI GGCC 3 cut(s) 393, 2007, 2930
ApaLI GTGCAC 1 cut(s) 3068
ApeKI GCWGC 5 cut(s) 905, 1196, 2073, 2462, 2499
Asp700I GAANNNNTTC 2 cut(s) 2287, 2954
AspLEI GCGC 2 cut(s) 753, 2732
AspS9I GGNCC 6 cut(s) 34, 393, 635, 1509, 1625, 2912
AsuHPI GGTGA 2 cut(s) 2005, 2068
AsuII TTCGAA 2 cut(s) 159, 1187
AvaII GGWCC 5 cut(s) 34, 635, 1509, 1625, 2912
BaeGI GKGCMC 2 cut(s) 1084, 3072
BaeI ACNNNNGTAYC 2 cut(s) 2094, 2127
BalI TGGCCA 1 cut(s) 2932
BamHI GGATCC 1 cut(s) 2564
BanI GGYRCC 2 cut(s) 1081, 1684
BanII GRGCYC 1 cut(s) 829
BbrPI CACGTG 1 cut(s) 347
BbsI GAAGAC 2 cut(s) 51, 451
Bbv12I GWGCWC 3 cut(s) 136, 3072, 3120
BbvI GCAGC 5 cut(s) 892, 1208, 2085, 2449, 2486
BccI CCATC 8 cut(s) 139, 402, 566, 781, 881, 1520, 1802, 2444
BceAI ACGGC 1 cut(s) 1672
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BciT130I CCWGG 2 cut(s) 391, 2078
BclI TGATCA 2 cut(s) 1234, 1965
BcoDI GTCTC 5 cut(s) 20, 527, 1706, 1760, 1884
BfaI CTAG 5 cut(s) 375, 425, 846, 1878, 2223
BfmI CTRYAG 1 cut(s) 906
BfoI RGCGCY 1 cut(s) 2733
BfrI CTTAAG 1 cut(s) 2438
BfuAI ACCTGC 1 cut(s) 2759
BglII AGATCT 3 cut(s) 1170, 1588, 2679
BisI GCNGC 5 cut(s) 906, 1197, 2074, 2463, 2500
BlsI GCNGC 5 cut(s) 907, 1198, 2075, 2464, 2501
Bme1390I CCNGG 2 cut(s) 391, 2078
Bme18I GGWCC 5 cut(s) 34, 635, 1509, 1625, 2912
BmeRI GACNNNNNGTC 2 cut(s) 775, 2352
BmgT120I GGNCC 6 cut(s) 34, 393, 635, 1509, 1625, 2912
BmiI GGNNCC 7 cut(s) 220, 388, 1083, 1510, 1686, 1860, 2566
BmrFI CCNGG 2 cut(s) 391, 2078
BmrI ACTGGG 1 cut(s) 1917
BmsI GCATC 8 cut(s) 631, 1012, 1034, 1732, 2242, 2264, 2653, 2755
BmuI ACTGGG 1 cut(s) 1917
BoxI GACNNNNGTC 1 cut(s) 1284
BpiI GAAGAC 2 cut(s) 51, 451
BplI GAGNNNNNCTC 4 cut(s) 1160, 1192, 1757, 1789
BpmI CTGGAG 2 cut(s) 2605, 2849
Bpu14I TTCGAA 2 cut(s) 159, 1187
Bsa29I ATCGAT 2 cut(s) 2490, 3022
BsaAI YACGTR 1 cut(s) 347
BsaI GGTCTC 3 cut(s) 527, 1706, 1760
BsaJI CCNNGG 3 cut(s) 390, 1599, 1671
BsaWI WCCGGW 2 cut(s) 136, 2551
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 136
Bse1I ACTGG 7 cut(s) 983, 1210, 1912, 2530, 2622, 2889, 2933
Bse3DI GCAATG 1 cut(s) 1237
BseBI CCWGG 2 cut(s) 391, 2078
BseCI ATCGAT 2 cut(s) 2490, 3022
BseDI CCNNGG 3 cut(s) 390, 1599, 1671
BseGI GGATG 5 cut(s) 413, 1103, 1378, 1723, 2403
BseLI CCNNNNNNNGG 2 cut(s) 111, 136
BseMI GCAATG 1 cut(s) 1237
BseMII CTCAG 8 cut(s) 194, 984, 1020, 1058, 1623, 1638, 1701, 2265
BseNI ACTGG 7 cut(s) 983, 1210, 1912, 2530, 2622, 2889, 2933
BseSI GKGCMC 2 cut(s) 1084, 3072
BseXI GCAGC 5 cut(s) 892, 1208, 2085, 2449, 2486
BseYI CCCAGC 1 cut(s) 1505
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 3 cut(s) 395, 2009, 2932
BshNI GGYRCC 2 cut(s) 1081, 1684
BshVI ATCGAT 2 cut(s) 2490, 3022
BsiHKAI GWGCWC 3 cut(s) 136, 3072, 3120
BsiSI CCGG 3 cut(s) 137, 1798, 2552
BslFI GGGAC 1 cut(s) 1522
BslI CCNNNNNNNGG 2 cut(s) 111, 136
BsmAI GTCTC 5 cut(s) 20, 527, 1706, 1760, 1884
BsmFI GGGAC 1 cut(s) 1522
BsmI GAATGC 4 cut(s) 418, 1799, 1807, 1952
BsnI GGCC 3 cut(s) 395, 2009, 2932
Bso31I GGTCTC 3 cut(s) 527, 1706, 1760
Bsp119I TTCGAA 2 cut(s) 159, 1187
Bsp1286I GDGCHC 5 cut(s) 136, 829, 1084, 3072, 3120
Bsp1407I TGTACA 1 cut(s) 2377
BspACI CCGC 2 cut(s) 355, 1386
BspANI GGCC 3 cut(s) 395, 2009, 2932
BspCNI CTCAG 8 cut(s) 193, 983, 1021, 1057, 1624, 1639, 1702, 2266
BspDI ATCGAT 2 cut(s) 2490, 3022
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 7 cut(s) 220, 388, 1083, 1510, 1686, 1860, 2566
BspMAI CTGCAG 1 cut(s) 910
BspMI ACCTGC 1 cut(s) 2759
BspPI GGATC 8 cut(s) 1457, 1819, 1842, 2138, 2461, 2559, 2572, 2624
BspT104I TTCGAA 2 cut(s) 159, 1187
BspT107I GGYRCC 2 cut(s) 1081, 1684
BspTI CTTAAG 1 cut(s) 2438
BspTNI GGTCTC 3 cut(s) 527, 1706, 1760
BsrDI GCAATG 1 cut(s) 1237
BsrGI TGTACA 1 cut(s) 2377
BsrI ACTGG 7 cut(s) 983, 1210, 1912, 2530, 2622, 2889, 2933
BssECI CCNNGG 3 cut(s) 390, 1599, 1671
BssT1I CCWWGG 2 cut(s) 1599, 1671
Bst2UI CCWGG 2 cut(s) 391, 2078
Bst4CI ACNGT 6 cut(s) 264, 490, 604, 1141, 2816, 3122
Bst6I CTCTTC 4 cut(s) 135, 1161, 2115, 3102
BstAFI CTTAAG 1 cut(s) 2438
BstAPI GCANNNNNTGC 1 cut(s) 764
BstAUI TGTACA 1 cut(s) 2377
BstBAI YACGTR 1 cut(s) 347
BstBI TTCGAA 2 cut(s) 159, 1187
BstC8I GCNNGC 2 cut(s) 749, 2220
BstDEI CTNAG 9 cut(s) 180, 970, 1029, 1044, 1632, 1647, 1710, 2274, 2409
BstF5I GGATG 5 cut(s) 413, 1103, 1378, 1723, 2403
BstH2I RGCGCY 1 cut(s) 2733
BstHHI GCGC 2 cut(s) 753, 2732
BstMAI GTCTC 5 cut(s) 20, 527, 1706, 1760, 1884
BstMWI GCNNNNNNNGC 1 cut(s) 764
BstNI CCWGG 2 cut(s) 391, 2078
BstNSI RCATGY 2 cut(s) 778, 2384
BstPAI GACNNNNGTC 1 cut(s) 1284
BstSCI CCNGG 2 cut(s) 389, 2076
BstSFI CTRYAG 1 cut(s) 906
BstSLI GKGCMC 2 cut(s) 1084, 3072
BstV1I GCAGC 5 cut(s) 892, 1208, 2085, 2449, 2486
BstV2I GAAGAC 2 cut(s) 51, 451
BstX2I RGATCY 7 cut(s) 1170, 1462, 1588, 2143, 2564, 2629, 2679
BstXI CCANNNNNNTGG 1 cut(s) 590
BstYI RGATCY 7 cut(s) 1170, 1462, 1588, 2143, 2564, 2629, 2679
Bsu15I ATCGAT 2 cut(s) 2490, 3022
BsuRI GGCC 3 cut(s) 395, 2009, 2932
BsuTUI ATCGAT 2 cut(s) 2490, 3022
BtsCI GGATG 5 cut(s) 413, 1103, 1378, 1723, 2403
BtsI GCAGTG 2 cut(s) 889, 915
BtsIMutI CAGTG 9 cut(s) 584, 609, 889, 915, 944, 990, 1707, 2463, 2745
BveI ACCTGC 1 cut(s) 2759
Cac8I GCNNGC 2 cut(s) 749, 2220
CaiI CAGNNNCTG 2 cut(s) 1145, 2462
CciI TCATGA 1 cut(s) 151
CfoI GCGC 2 cut(s) 753, 2732
Cfr13I GGNCC 6 cut(s) 34, 393, 635, 1509, 1625, 2912
ClaI ATCGAT 2 cut(s) 2490, 3022
Csp6I GTAC 6 cut(s) 600, 1844, 2207, 2226, 2378, 3027
CspCI CAANNNNNGTGG 2 cut(s) 1585, 1620
CviQI GTAC 6 cut(s) 600, 1844, 2207, 2226, 2378, 3027
DdeI CTNAG 9 cut(s) 180, 970, 1029, 1044, 1632, 1647, 1710, 2274, 2409
DriI GACNNNNNGTC 2 cut(s) 775, 2352
EaeI YGGCCR 1 cut(s) 2930
Eam1104I CTCTTC 4 cut(s) 135, 1161, 2115, 3102
Eam1105I GACNNNNNGTC 2 cut(s) 775, 2352
EarI CTCTTC 4 cut(s) 135, 1161, 2115, 3102
Eco130I CCWWGG 2 cut(s) 1599, 1671
Eco24I GRGCYC 1 cut(s) 829
Eco31I GGTCTC 3 cut(s) 527, 1706, 1760
Eco47I GGWCC 5 cut(s) 34, 635, 1509, 1625, 2912
Eco47III AGCGCT 1 cut(s) 2731
Eco72I CACGTG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 2912
EcoRI GAATTC 1 cut(s) 3098
EcoRII CCWGG 2 cut(s) 389, 2076
EcoT14I CCWWGG 2 cut(s) 1599, 1671
EcoT22I ATGCAT 2 cut(s) 1027, 2257
EcoT38I GRGCYC 1 cut(s) 829
ErhI CCWWGG 2 cut(s) 1599, 1671
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 1 cut(s) 1522
FauNDI CATATG 1 cut(s) 3059
FbaI TGATCA 2 cut(s) 1234, 1965
Fnu4HI GCNGC 5 cut(s) 906, 1197, 2074, 2463, 2500
FokI GGATG 5 cut(s) 420, 1090, 1365, 1710, 2390
FriOI GRGCYC 1 cut(s) 829
Fsp4HI GCNGC 5 cut(s) 906, 1197, 2074, 2463, 2500
FspBI CTAG 5 cut(s) 375, 425, 846, 1878, 2223
GlaI GCGC 2 cut(s) 752, 2731
GluI GCNGC 5 cut(s) 906, 1197, 2074, 2463, 2500
GsaI CCCAGC 1 cut(s) 1509
GsuI CTGGAG 2 cut(s) 2605, 2849
HaeII RGCGCY 1 cut(s) 2733
HaeIII GGCC 3 cut(s) 395, 2009, 2932
HapII CCGG 3 cut(s) 137, 1798, 2552
HhaI GCGC 2 cut(s) 753, 2732
Hin6I GCGC 2 cut(s) 751, 2730
HinP1I GCGC 2 cut(s) 751, 2730
HincII GTYRAC 1 cut(s) 1371
HindII GTYRAC 1 cut(s) 1371
HindIII AAGCTT 1 cut(s) 162
HpaII CCGG 3 cut(s) 137, 1798, 2552
HphI GGTGA 2 cut(s) 2005, 2068
Hpy166II GTNNAC 7 cut(s) 350, 479, 565, 1371, 1534, 2209, 3070
Hpy8I GTNNAC 7 cut(s) 350, 479, 565, 1371, 1534, 2209, 3070
HpyAV CCTTC 9 cut(s) 1026, 1336, 1629, 1738, 1972, 2256, 2863, 2868, 3047
HpyCH4III ACNGT 6 cut(s) 264, 490, 604, 1141, 2816, 3122
HpyCH4IV ACGT 2 cut(s) 346, 2371
HpyF10VI GCNNNNNNNGC 1 cut(s) 764
HpyF3I CTNAG 9 cut(s) 180, 970, 1029, 1044, 1632, 1647, 1710, 2274, 2409
HpySE526I ACGT 2 cut(s) 346, 2371
HspAI GCGC 2 cut(s) 751, 2730
Ksp22I TGATCA 2 cut(s) 1234, 1965
LmnI GCTCC 1 cut(s) 2554
Lsp1109I GCAGC 5 cut(s) 892, 1208, 2085, 2449, 2486
LweI GCATC 8 cut(s) 631, 1012, 1034, 1732, 2242, 2264, 2653, 2755
MaeI CTAG 5 cut(s) 375, 425, 846, 1878, 2223
MaeII ACGT 2 cut(s) 346, 2371
MaeIII GTNAC 6 cut(s) 1114, 1655, 1993, 2056, 2554, 3037
MflI RGATCY 7 cut(s) 1170, 1462, 1588, 2143, 2564, 2629, 2679
MhlI GDGCHC 5 cut(s) 136, 829, 1084, 3072, 3120
MlsI TGGCCA 1 cut(s) 2932
MluNI TGGCCA 1 cut(s) 2932
MlyI GAGTC 6 cut(s) 1036, 1451, 1928, 1991, 2132, 2707
MmeI TCCRAC 2 cut(s) 1160, 1585
Mox20I TGGCCA 1 cut(s) 2932
Mph1103I ATGCAT 2 cut(s) 1027, 2257
MroXI GAANNNNTTC 2 cut(s) 2287, 2954
MscI TGGCCA 1 cut(s) 2932
MseI TTAA 9 cut(s) 381, 492, 975, 1868, 1938, 2189, 2298, 2439, 3078
MslI CAYNNNNRTG 6 cut(s) 78, 570, 723, 1112, 1381, 2379
Msp20I TGGCCA 1 cut(s) 2932
MspA1I CMGCKG 2 cut(s) 1631, 2499
MspCI CTTAAG 1 cut(s) 2438
MspI CCGG 3 cut(s) 137, 1798, 2552
MspR9I CCNGG 2 cut(s) 391, 2078
Mva1269I GAATGC 4 cut(s) 418, 1799, 1807, 1952
MvaI CCWGG 2 cut(s) 391, 2078
MwoI GCNNNNNNNGC 1 cut(s) 764
NdeI CATATG 1 cut(s) 3059
NlaIV GGNNCC 7 cut(s) 220, 388, 1083, 1510, 1686, 1860, 2566
NmuCI GTSAC 4 cut(s) 1114, 1993, 2056, 3037
NsiI ATGCAT 2 cut(s) 1027, 2257
NspI RCATGY 2 cut(s) 778, 2384
NspV TTCGAA 2 cut(s) 159, 1187
OliI CACNNNNGTG 1 cut(s) 1112
PagI TCATGA 1 cut(s) 151
PaqCI CACCTGC 1 cut(s) 2759
PciI ACATGT 2 cut(s) 774, 2380
PctI GAATGC 4 cut(s) 418, 1799, 1807, 1952
PdmI GAANNNNTTC 2 cut(s) 2287, 2954
PfeI GAWTC 9 cut(s) 196, 341, 523, 854, 938, 1100, 1580, 1700, 2183
PkrI GCNGC 5 cut(s) 907, 1198, 2075, 2464, 2501
PleI GAGTC 6 cut(s) 1036, 1450, 1927, 1990, 2131, 2706
PmaCI CACGTG 1 cut(s) 347
PmlI CACGTG 1 cut(s) 347
PpsI GAGTC 6 cut(s) 1036, 1450, 1927, 1990, 2131, 2706
Ppu21I YACGTR 1 cut(s) 347
PpuMI RGGWCCY 1 cut(s) 2912
PscI ACATGT 2 cut(s) 774, 2380
PshAI GACNNNNGTC 1 cut(s) 1284
Psp5II RGGWCCY 1 cut(s) 2912
Psp6I CCWGG 2 cut(s) 389, 2076
PspCI CACGTG 1 cut(s) 347
PspFI CCCAGC 1 cut(s) 1505
PspGI CCWGG 2 cut(s) 389, 2076
PspN4I GGNNCC 7 cut(s) 220, 388, 1083, 1510, 1686, 1860, 2566
PspPI GGNCC 6 cut(s) 34, 393, 635, 1509, 1625, 2912
PspPPI RGGWCCY 1 cut(s) 2912
PstI CTGCAG 1 cut(s) 910
PstNI CAGNNNCTG 2 cut(s) 1145, 2462
PsuI RGATCY 7 cut(s) 1170, 1462, 1588, 2143, 2564, 2629, 2679
PvuII CAGCTG 2 cut(s) 1631, 2499
RsaI GTAC 6 cut(s) 601, 1845, 2208, 2227, 2379, 3028
RsaNI GTAC 6 cut(s) 600, 1844, 2207, 2226, 2378, 3027
RseI CAYNNNNRTG 6 cut(s) 78, 570, 723, 1112, 1381, 2379
SaqAI TTAA 9 cut(s) 381, 492, 975, 1868, 1938, 2189, 2298, 2439, 3078
SatI GCNGC 5 cut(s) 906, 1197, 2074, 2463, 2500
Sau96I GGNCC 6 cut(s) 34, 393, 635, 1509, 1625, 2912
SchI GAGTC 6 cut(s) 1036, 1451, 1928, 1991, 2132, 2707
ScrFI CCNGG 2 cut(s) 391, 2078
SduI GDGCHC 5 cut(s) 136, 829, 1084, 3072, 3120
SfaNI GCATC 8 cut(s) 631, 1012, 1034, 1732, 2242, 2264, 2653, 2755
SfcI CTRYAG 1 cut(s) 906
SfuI TTCGAA 2 cut(s) 159, 1187
SinI GGWCC 5 cut(s) 34, 635, 1509, 1625, 2912
SmiMI CAYNNNNRTG 6 cut(s) 78, 570, 723, 1112, 1381, 2379
SmlI CTYRAG 1 cut(s) 2438
SmoI CTYRAG 1 cut(s) 2438
SsiI CCGC 2 cut(s) 355, 1386
SspI AATATT 2 cut(s) 2573, 3007
SspMI CTAG 5 cut(s) 375, 425, 846, 1878, 2223
StyD4I CCNGG 2 cut(s) 389, 2076
StyI CCWWGG 2 cut(s) 1599, 1671
TaaI ACNGT 6 cut(s) 264, 490, 604, 1141, 2816, 3122
TaiI ACGT 2 cut(s) 349, 2374
TaqI TCGA 5 cut(s) 159, 228, 1187, 2490, 3022
TatI WGTACW 4 cut(s) 599, 2225, 2377, 3026
TfiI GAWTC 9 cut(s) 196, 341, 523, 854, 938, 1100, 1580, 1700, 2183
Tru1I TTAA 9 cut(s) 381, 492, 975, 1868, 1938, 2189, 2298, 2439, 3078
Tru9I TTAA 9 cut(s) 381, 492, 975, 1868, 1938, 2189, 2298, 2439, 3078
TscAI CASTG 9 cut(s) 584, 609, 889, 915, 951, 990, 1714, 2463, 2745
TseFI GTSAC 4 cut(s) 1114, 1993, 2056, 3037
TseI GCWGC 5 cut(s) 905, 1196, 2073, 2462, 2499
Tsp45I GTSAC 4 cut(s) 1114, 1993, 2056, 3037
TspGWI ACGGA 1 cut(s) 604
TspRI CASTG 9 cut(s) 584, 609, 889, 915, 951, 990, 1714, 2463, 2745
Vha464I CTTAAG 1 cut(s) 2438
VneI GTGCAC 1 cut(s) 3068
VpaK11BI GGWCC 5 cut(s) 34, 635, 1509, 1625, 2912
XceI RCATGY 2 cut(s) 778, 2384
XmnI GAANNNNTTC 2 cut(s) 2287, 2954
XspI CTAG 5 cut(s) 375, 425, 846, 1878, 2223
Zsp2I ATGCAT 2 cut(s) 1027, 2257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.