RchiOBHm_Chr2g0149271

B3 domain-containing transcription factor VRN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002691
Physical Location & Seq
Reverse (-)
67137782 .. 67138573
792 bp
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UTR
Exon/CDS
Intron
PRQ51868

Sequence Viewer

Length: 417 bp
ATGATGCAAGAACCCTCCTACCTTACAACTGCTTTGAAACTTGATATAAACTTTGCCCAAAAATATAATTTATCGAGCCGCAATGTTAACCTACAGATTCCAAATGGGAGCACTTGGCCTGTTATTTGCTCTGTCACCAACATAGAAGAAGACGGAATCCGCTACACCAGAGAAGGAGTTGCAAGATACCGCTATCCCAGTTGGTGTATCAGAGAAGAAGTTGCAAGAATCCGCTATCGTGGTTGGATAAAATTTGCAACAGACAATGGGCTGCAAGTAGGGGATACTTGTGTGTTTGAGATGATAAAGCAGCAGCCTGAAATAACGTTCTTAGTTCACATAATCCAAGCTACTTACGCTACTAAGCTCCATTTCAACAATATTTCCCAGAACATGAAGTTACGAAGAATTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

138

Amino Acids

16.15

Weight (kDa)

9.27

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 11 - 116 6.3e-09 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 79, 160, 190, 232
AclI AACGTT 1 cut(s) 326
AcsI RAATTY 2 cut(s) 251, 408
AgsI TTSAA 2 cut(s) 37, 376
AluBI AGCT 2 cut(s) 350, 367
AluI AGCT 2 cut(s) 350, 367
Alw21I GWGCWC 1 cut(s) 113
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 3 cut(s) 271, 310, 313
ApoI RAATTY 2 cut(s) 251, 408
AsuHPI GGTGA 1 cut(s) 127
BaeI ACNNNNGTAYC 2 cut(s) 276, 309
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 258, 322, 325
BciVI GTATCC 1 cut(s) 277
BfmI CTRYAG 1 cut(s) 92
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 4 cut(s) 79, 272, 311, 314
BlsI GCNGC 4 cut(s) 80, 273, 312, 315
BmrI ACTGGG 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 3 cut(s) 258, 322, 325
BshFI GGCC 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 113
BsnI GGCC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 113
BspACI CCGC 4 cut(s) 79, 160, 190, 232
BspANI GGCC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 331, 363
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 258, 322, 325
BstV2I GAAGAC 1 cut(s) 156
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 1 cut(s) 118
CviAII CATG 1 cut(s) 394
CviJI RGCY 6 cut(s) 78, 118, 271, 316, 350, 367
CviKI_1 RGCY 6 cut(s) 78, 118, 271, 316, 350, 367
DdeI CTNAG 2 cut(s) 331, 363
EcoRI GAATTC 1 cut(s) 408
FaeI CATG 1 cut(s) 397
FaiI YATR 5 cut(s) 47, 66, 143, 341, 395
FatI CATG 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 79, 272, 311, 314
Fsp4HI GCNGC 4 cut(s) 79, 272, 311, 314
GluI GCNGC 4 cut(s) 79, 272, 311, 314
HaeIII GGCC 1 cut(s) 118
Hin1II CATG 1 cut(s) 397
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 3 cut(s) 97, 156, 228
HpaI GTTAAC 1 cut(s) 88
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 2 cut(s) 88, 337
Hpy188I TCNGA 1 cut(s) 212
Hpy8I GTNNAC 2 cut(s) 88, 337
HpyAV CCTTC 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 5 cut(s) 7, 182, 224, 257, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 331, 363
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 1 cut(s) 397
KspAI GTTAAC 1 cut(s) 88
LmnI GCTCC 2 cut(s) 108, 372
LpnPI CCDG 5 cut(s) 132, 181, 211, 330, 401
Lsp1109I GCAGC 3 cut(s) 258, 322, 325
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 2 cut(s) 133, 399
MboII GAAGA 4 cut(s) 158, 161, 227, 417
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 3 cut(s) 67, 251, 408
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 1 cut(s) 25
MseI TTAA 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 356
NlaIII CATG 1 cut(s) 397
NmuCI GTSAC 1 cut(s) 133
PfeI GAWTC 3 cut(s) 97, 156, 228
PkrI GCNGC 4 cut(s) 80, 273, 312, 315
Psp1406I AACGTT 1 cut(s) 326
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 4 cut(s) 79, 272, 311, 314
SduI GDGCHC 1 cut(s) 113
SetI ASST 5 cut(s) 24, 93, 329, 352, 369
SfcI CTRYAG 1 cut(s) 92
Sse9I AATT 3 cut(s) 67, 251, 408
SsiI CCGC 4 cut(s) 79, 160, 190, 232
SspI AATATT 1 cut(s) 382
TaiI ACGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 74
TasI AATT 3 cut(s) 67, 251, 408
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 3 cut(s) 97, 156, 228
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 3 cut(s) 271, 310, 313
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 410
TspGWI ACGGA 2 cut(s) 168, 402
XapI RAATTY 2 cut(s) 251, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.