Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002691

Physical Location & Seq

Genomic Coordinates Reverse (-)

13989368 .. 13995086

Gene Structure 5719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G157600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

ATGGATGGCAAGGTAGCTTGTGTAGAATGCACTCAGAAGTGTTTGCTGGATCATGGGAACAAGAAGAAAGCCTCACCTGATGTTGCCTCTTTTTTCAAAGTCATGATTGGAGATCGGTTTTCTAAACTTTTGTTCTTGCCTCCTAAATTTGCTCCTACTGTGTCAGCATTGGTTAATCAAAAAGCTGTTCTTGAAGATTCACTGGGGCTGCAATGGGAAGTTATAATATCCAGAATTAATGGCTCCCTTTCTCTTAAACAAGGATGGAATGCATTTTCATTAGACCATGATCTAAAGATTGGAGAATTTCTGATCTTCAATTACATCACAAGTTCACATTTTATTGTTAAAATTTATGACAAATCTGGGTGTGAGAAACTCAACTTTCCCGAGGCCATAAATCAGAAGAAAAGGACAAGGGATAACAGAAAGTATACCTTCAAAGCTGGTCCGAGTCACACAATTGATAGAAGTTCAATGAACAAACGGGATTCAAGAACCTCTGTTGTGCATGGCTCAGATGCAGATATAGGTCACCACCTGCACGAGATGAATGACACGGGGAAAGATCTAATTGTCACAGAATCAGCCCGTGATAATAGTAATGAAAGGTCAAAGCTCAATCCCAAAGAAGCATACATTGAAGAAATGATCTGTATGCTCGATAGAGACGTGGGGGACAAACAAGAAGAGGACAGAACCTATATTTTTGATTTGTCTGATTTTGAAATGTTGAAAAAGAACTCTGGCACTGGTGGAAGCCATGAAGTAACTGCAATGGATGAAACATGCACAGATCATGATGATTCATTACTAAGATTGAGAAATGGAGCTGGCCCAGTTGACAAAAATCCAGTGGCTAAAGGAGCAGTGACTACAGCAATTCCTATGGATGAAACATGCTCAGATCATGATGATTCATTGCTAAGATTGATAAATGAGGCTGGCTCAGTTGATAAAAGTCCAGTGGCTAAAGAAGCTGTGACTGCAGCAATTCCTTCGGATGCATCCAAGTTTGATGGGAGTCAGATAAATAACTCTTCTGAAACCAAAGTCCAAAATACAGCATCACCTTCTCATGAAGGTTTATGTATCTGCAAGACCTCTTGGCATCTCTTCCCAAAAGCTGCTTTAAAACCTGAAGAAAATGAGAACATCTCTAATATTTCAAACACAGCAATAAATAAATGCCTGACTGCTGATGGATCAGAATCATTATCGGGCAATGAGGTGGTAATCTCCGGAAAGGAACATGATTTCATCGATGACAGTTGCCAAAGTGCTAACAAAAAAATTTCTGAAATTTCAGAGTCCTTTGATAAAACGATGAAGGCCATTAAAATAGAGTCTGTGGAGTTGACTTCAGATCCGTGCAGTCAGAAAATCATTCCACAAATAAATGGGGAATCAGTAAAGGTTGTGAACCCGGTGTGTAGTAAGATTTCTAATATGATTAGAACAGGAAATGACTGTGCTGTTCCTGTGGTAAAATCTGAACCTGTTGATCCAGTCATAACCTGGCCAATCTCATCCAGTTTCTCCTGTCAGGTGAAAGCAGGCAGTCAATCTTTTCTTGAGTTGCCAATGAGGTTGCCAATACGCATGACCTATAGAGGAAGGCCTCAAACGGATAGGAGGGTAGTTTACCTAAGAGATCCGGTAATGAGATTGTGGCCAGTCCTCTACATTGAAAGAAATTACTTCAAAACATTGGCAAGCGGTTGGGAAGCTTTCAGCAAGGCAAACAACATTCAACCAGGAGATGAGTGTGTTATTGGGATTGAAAATGGAGTTGAAGGCATATGCTCCGTCCAGATAATTAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

610

Amino Acids

67.3

Weight (kDa)

5.79

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07280 FvH4_5g07280 FvH4_5g07280
malus_domestica	MD06G1157600.v1.1
prunus_persica	Prupe.5G155300_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1 Prupe.5G157600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0149271 RchiOBHm_Chr2g0149281 RchiOBHm_Chr7g0191351
rosa_laevigata	RLG00000004463 RLG00000020389
rosa_multiflora	Rmu_sc0004860.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438290 Rroxscaffold_2G00098250 Rroxscaffold_3G00263910
rosa_rugosa	Rorug02G0410000 Rorug02G0410100 Rorug06G0510100
rosa_samantha	Rh2AG471000 Rh2BG483200 Rh2CG456900 Rh2DG492200 Rh7AG117500 Rh7BG119400 Rh7CG122500 Rh7DG120600
rosa_wichuraiana	Rw2G038310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AarI	CACCTGC	1 cut(s)	549
Acc36I	ACCTGC	1 cut(s)	549
AccI	GTMKAC	1 cut(s)	434
AccIII	TCCGGA	1 cut(s)	1241
AciI	CCGC	1 cut(s)	1719
AclWI	GGATC	5 cut(s)	57, 1213, 1361, 1499, 1649
AcoI	YGGCCR	2 cut(s)	1520, 1673
AcsI	RAATTY	5 cut(s)	146, 305, 351, 1293, 1302
AcuI	CTGAAG	2 cut(s)	1161, 1347
AjiI	CACGTC	1 cut(s)	673
AjnI	CCWGG	2 cut(s)	1517, 1756
AluBI	AGCT	8 cut(s)	17, 185, 446, 619, 833, 980, 1127, 1730
AluI	AGCT	8 cut(s)	17, 185, 446, 619, 833, 980, 1127, 1730
Alw26I	GTCTC	1 cut(s)	663
AlwI	GGATC	5 cut(s)	57, 1213, 1361, 1499, 1649
Ama87I	CYCGRG	1 cut(s)	389
Aor13HI	TCCGGA	1 cut(s)	1241
AoxI	GGCC	6 cut(s)	393, 835, 1332, 1520, 1619, 1673
ApeKI	GCWGC	3 cut(s)	208, 989, 1127
ApoI	RAATTY	5 cut(s)	146, 305, 351, 1293, 1302
AseI	ATTAAT	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	449, 836
AsuC2I	CCSGG	1 cut(s)	1427
AsuHPI	GGTGA	4 cut(s)	66, 527, 1062, 1561
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	449
BalI	TGGCCA	2 cut(s)	1522, 1675
BauI	CACGAG	1 cut(s)	545
BbvI	GCAGC	3 cut(s)	195, 1001, 1114
BccI	CCATC	3 cut(s)	258, 1013, 1196
BcgI	CGANNNNNNTGC	2 cut(s)	981, 1015
BciT130I	CCWGG	2 cut(s)	1519, 1758
BcnI	CCSGG	1 cut(s)	1427
BcoDI	GTCTC	1 cut(s)	663
BfmI	CTRYAG	3 cut(s)	876, 987, 1609
BfuAI	ACCTGC	1 cut(s)	549
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	3 cut(s)	209, 990, 1128
BlsI	GCNGC	3 cut(s)	210, 991, 1129
Bme1390I	CCNGG	3 cut(s)	1427, 1519, 1758
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	673
BmgT120I	GGNCC	2 cut(s)	449, 836
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	3 cut(s)	1427, 1519, 1758
BmrI	ACTGGG	2 cut(s)	212, 833
BmsI	GCATC	5 cut(s)	511, 994, 1016, 1076, 1120
BmuI	ACTGGG	2 cut(s)	212, 833
BplI	GAGNNNNNCTC	4 cut(s)	932, 964, 1142, 1174
BpuEI	CTTGAG	1 cut(s)	1595
BpuMI	CCSGG	1 cut(s)	1427
Bsa29I	ATCGAT	1 cut(s)	1263
BsaBI	GATNNNNATC	1 cut(s)	1210
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	2 cut(s)	1241, 1657
Bse1I	ACTGG	8 cut(s)	207, 757, 839, 854, 965, 1508, 1533, 1676
Bse3DI	GCAATG	4 cut(s)	218, 783, 920, 1231
Bse8I	GATNNNNATC	1 cut(s)	1210
BseAI	TCCGGA	1 cut(s)	1241
BseBI	CCWGG	2 cut(s)	1519, 1758
BseCI	ATCGAT	1 cut(s)	1263
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	7 cut(s)	10, 269, 787, 898, 1007, 1009, 1529
BseJI	GATNNNNATC	1 cut(s)	1210
BseMI	GCAATG	4 cut(s)	218, 783, 920, 1231
BseMII	CTCAG	4 cut(s)	47, 531, 918, 963
BseNI	ACTGG	8 cut(s)	207, 757, 839, 854, 965, 1508, 1533, 1676
BseXI	GCAGC	3 cut(s)	195, 1001, 1114
BsgI	GTGCAG	2 cut(s)	527, 1393
BshFI	GGCC	6 cut(s)	395, 837, 1334, 1522, 1621, 1675
BshVI	ATCGAT	1 cut(s)	1263
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	3 cut(s)	1242, 1427, 1658
BslFI	GGGAC	1 cut(s)	692
BsmAI	GTCTC	1 cut(s)	663
BsmBI	CGTCTC	1 cut(s)	663
BsmFI	GGGAC	1 cut(s)	692
BsmI	GAATGC	2 cut(s)	32, 274
BsnI	GGCC	6 cut(s)	395, 837, 1334, 1522, 1621, 1675
BsoBI	CYCGRG	1 cut(s)	389
Bsp13I	TCCGGA	1 cut(s)	1241
BspACI	CCGC	1 cut(s)	1719
BspANI	GGCC	6 cut(s)	395, 837, 1334, 1522, 1621, 1675
BspCNI	CTCAG	4 cut(s)	46, 530, 917, 962
BspDI	ATCGAT	1 cut(s)	1263
BspEI	TCCGGA	1 cut(s)	1241
BspHI	TCATGA	4 cut(s)	102, 799, 910, 1078
BspLI	GGNNCC	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	991
BspMI	ACCTGC	1 cut(s)	549
BspPI	GGATC	5 cut(s)	57, 1213, 1361, 1499, 1649
BsrDI	GCAATG	4 cut(s)	218, 783, 920, 1231
BsrI	ACTGG	8 cut(s)	207, 757, 839, 854, 965, 1508, 1533, 1676
BssECI	CCNNGG	1 cut(s)	390
BssNAI	GTATAC	1 cut(s)	435
BssSI	CACGAG	1 cut(s)	545
Bst1107I	GTATAC	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	545
Bst2UI	CCWGG	2 cut(s)	1519, 1758
Bst4CI	ACNGT	3 cut(s)	160, 1271, 1472
Bst6I	CTCTTC	3 cut(s)	684, 1045, 1121
BstC8I	GCNNGC	4 cut(s)	835, 946, 1558, 1717
BstDEI	CTNAG	7 cut(s)	33, 517, 815, 904, 926, 949, 1649
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	7 cut(s)	10, 269, 787, 898, 1007, 1009, 1529
BstMAI	GTCTC	1 cut(s)	663
BstMWI	GCNNNNNNNGC	3 cut(s)	866, 977, 986
BstNI	CCWGG	2 cut(s)	1519, 1758
BstNSI	RCATGY	2 cut(s)	792, 903
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	3 cut(s)	1425, 1517, 1756
BstSFI	CTRYAG	3 cut(s)	876, 987, 1609
BstV1I	GCAGC	3 cut(s)	195, 1001, 1114
BstX2I	RGATCY	3 cut(s)	568, 1366, 1654
BstYI	RGATCY	3 cut(s)	568, 1366, 1654
BstZ17I	GTATAC	1 cut(s)	435
Bsu15I	ATCGAT	1 cut(s)	1263
BsuRI	GGCC	6 cut(s)	395, 837, 1334, 1522, 1621, 1675
BsuTUI	ATCGAT	1 cut(s)	1263
BtrI	CACGTC	1 cut(s)	673
BtsCI	GGATG	7 cut(s)	10, 269, 787, 898, 1007, 1009, 1529
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	5 cut(s)	200, 750, 861, 876, 972
BveI	ACCTGC	1 cut(s)	549
Cac8I	GCNNGC	4 cut(s)	835, 946, 1558, 1717
CciI	TCATGA	4 cut(s)	102, 799, 910, 1078
Cfr13I	GGNCC	2 cut(s)	449, 836
ClaI	ATCGAT	1 cut(s)	1263
DdeI	CTNAG	7 cut(s)	33, 517, 815, 904, 926, 949, 1649
DraI	TTTAAA	1 cut(s)	1134
EaeI	YGGCCR	2 cut(s)	1520, 1673
Eam1104I	CTCTTC	3 cut(s)	684, 1045, 1121
EarI	CTCTTC	3 cut(s)	684, 1045, 1121
Eco147I	AGGCCT	1 cut(s)	1621
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	1161, 1347
Eco88I	CYCGRG	1 cut(s)	389
Eco91I	GGTNACC	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	1517, 1756
EcoT22I	ATGCAT	2 cut(s)	274, 1009
Esp3I	CGTCTC	1 cut(s)	663
FalI	AAGNNNNNCTT	4 cut(s)	174, 206, 422, 454
FaqI	GGGAC	1 cut(s)	692
FauNDI	CATATG	1 cut(s)	1802
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	3 cut(s)	209, 990, 1128
FokI	GGATG	7 cut(s)	17, 276, 794, 905, 994, 1016, 1516
Fsp4HI	GCNGC	3 cut(s)	209, 990, 1128
GluI	GCNGC	3 cut(s)	209, 990, 1128
HaeIII	GGCC	6 cut(s)	395, 837, 1334, 1522, 1621, 1675
HapII	CCGG	3 cut(s)	1242, 1427, 1658
HincII	GTYRAC	2 cut(s)	844, 1359
HindII	GTYRAC	2 cut(s)	844, 1359
HindIII	AAGCTT	1 cut(s)	1728
HpaII	CCGG	3 cut(s)	1242, 1427, 1658
HphI	GGTGA	4 cut(s)	66, 527, 1062, 1561
Hpy166II	GTNNAC	6 cut(s)	335, 435, 844, 1359, 1423, 1645
Hpy8I	GTNNAC	6 cut(s)	335, 435, 844, 1359, 1423, 1645
HpyAV	CCTTC	7 cut(s)	448, 1008, 1076, 1083, 1324, 1611, 1790
HpyCH4III	ACNGT	3 cut(s)	160, 1271, 1472
HpyCH4IV	ACGT	1 cut(s)	672
HpyF10VI	GCNNNNNNNGC	3 cut(s)	866, 977, 986
HpyF3I	CTNAG	7 cut(s)	33, 517, 815, 904, 926, 949, 1649
HpySE526I	ACGT	1 cut(s)	672
Kpn2I	TCCGGA	1 cut(s)	1241
LmnI	GCTCC	5 cut(s)	157, 248, 830, 866, 1811
Lsp1109I	GCAGC	3 cut(s)	195, 1001, 1114
LweI	GCATC	5 cut(s)	511, 994, 1016, 1076, 1120
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	6 cut(s)	455, 533, 577, 769, 871, 982
MboII	GAAGA	9 cut(s)	76, 206, 307, 418, 656, 701, 1032, 1108, 1154
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	3 cut(s)	568, 1366, 1654
MlsI	TGGCCA	2 cut(s)	1522, 1675
MluNI	TGGCCA	2 cut(s)	1522, 1675
MlyI	GAGTC	4 cut(s)	463, 1033, 1319, 1355
Mox20I	TGGCCA	2 cut(s)	1522, 1675
Mph1103I	ATGCAT	2 cut(s)	274, 1009
MroI	TCCGGA	1 cut(s)	1241
MscI	TGGCCA	2 cut(s)	1522, 1675
MseI	TTAA	6 cut(s)	174, 237, 255, 348, 1133, 1338
Msp20I	TGGCCA	2 cut(s)	1522, 1675
MspI	CCGG	3 cut(s)	1242, 1427, 1658
MspR9I	CCNGG	3 cut(s)	1427, 1519, 1758
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	2 cut(s)	32, 274
MvaI	CCWGG	2 cut(s)	1519, 1758
MwoI	GCNNNNNNNGC	3 cut(s)	866, 977, 986
NciI	CCSGG	1 cut(s)	1427
NdeI	CATATG	1 cut(s)	1802
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	5 cut(s)	455, 533, 577, 871, 982
NsiI	ATGCAT	2 cut(s)	274, 1009
NspI	RCATGY	2 cut(s)	792, 903
PagI	TCATGA	4 cut(s)	102, 799, 910, 1078
PaqCI	CACCTGC	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	1621
PcsI	WCGNNNNNNNCGW	1 cut(s)	669
PctI	GAATGC	2 cut(s)	32, 274
PfeI	GAWTC	7 cut(s)	197, 491, 584, 806, 917, 1211, 1406
PkrI	GCNGC	3 cut(s)	210, 991, 1129
PleI	GAGTC	4 cut(s)	462, 1032, 1318, 1354
PpsI	GAGTC	4 cut(s)	462, 1032, 1318, 1354
PshBI	ATTAAT	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	1517, 1756
PspEI	GGTNACC	1 cut(s)	533
PspGI	CCWGG	2 cut(s)	1517, 1756
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	449, 836
PstI	CTGCAG	1 cut(s)	991
PsuI	RGATCY	3 cut(s)	568, 1366, 1654
SaqAI	TTAA	6 cut(s)	174, 237, 255, 348, 1133, 1338
SatI	GCNGC	3 cut(s)	209, 990, 1128
Sau96I	GGNCC	2 cut(s)	449, 836
SchI	GAGTC	4 cut(s)	463, 1033, 1319, 1355
ScrFI	CCNGG	3 cut(s)	1427, 1519, 1758
SfaNI	GCATC	5 cut(s)	511, 994, 1016, 1076, 1120
SfcI	CTRYAG	3 cut(s)	876, 987, 1609
SinI	GGWCC	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	1574
SmoI	CTYRAG	1 cut(s)	1574
SseBI	AGGCCT	1 cut(s)	1621
SsiI	CCGC	1 cut(s)	1719
SspI	AATATT	1 cut(s)	1165
StuI	AGGCCT	1 cut(s)	1621
StyD4I	CCNGG	3 cut(s)	1425, 1517, 1756
TaaI	ACNGT	3 cut(s)	160, 1271, 1472
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	2 cut(s)	663, 1263
TfiI	GAWTC	7 cut(s)	197, 491, 584, 806, 917, 1211, 1406
Tru1I	TTAA	6 cut(s)	174, 237, 255, 348, 1133, 1338
Tru9I	TTAA	6 cut(s)	174, 237, 255, 348, 1133, 1338
TscAI	CASTG	5 cut(s)	207, 757, 861, 876, 972
TseFI	GTSAC	5 cut(s)	455, 533, 577, 871, 982
TseI	GCWGC	3 cut(s)	208, 989, 1127
Tsp45I	GTSAC	5 cut(s)	455, 533, 577, 871, 982
TspGWI	ACGGA	3 cut(s)	1359, 1643, 1798
TspRI	CASTG	5 cut(s)	207, 757, 861, 876, 972
VpaK11BI	GGWCC	1 cut(s)	449
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	5 cut(s)	146, 305, 351, 1293, 1302
XceI	RCATGY	2 cut(s)	792, 903
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1515
XmiI	GTMKAC	1 cut(s)	434
Zsp2I	ATGCAT	2 cut(s)	274, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.