Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Forward (+)

1753284 .. 1755817

Gene Structure 2534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAAGTTGAAGAGAGTGACGCTGCTAGTGGAAAGGTGCAAAAGGTTTACTATTCTGTCTTGGTCAAAGCTGTTGACATTCATCGATCAGGAAATATATCGTATAAAGTTGCCTGGTTCGGCAAAGATTGGAGAAGGGAAACCCGAAAACCAGAACCATGCTATAATTTTTACTCGAGGAGAAGCTCTTCAGGCCATTGACATGAACCAGGACAATTACTTAGAAGAAGCTTTTAAAATGAGAAACCTTCTTGAAGAATTTAATGAGGACCACGGAGTACGTCCTCCTTCAATTTTAGGTGTTCGTGAGCATATCTTTACTGGAAGTGTTTCTTCATTGGCCTGGTTTATGTCAAATCAGGAAATGAGCTTTGTGACCATAGGTCAAAGAGTTCTTGCAAGACCTTTGAAGATCCGCTTCCACTATGGACACCCAGATGTCTTTGATAGAATCTTCCACATTACTCGTGGTGGCATGAGCAAGGCTTCCCGTGGCATCAATCTGAGCGAGGACATCTTTGCTGGTTTTAATTCAACGTTAAGGCGAGGGAATGTTACTCACCATGAATACATTCAAGTTGGGAAGGGTAGAGATGTTGGGCTCAACCAAATCTCTCTCTTTGAAGCTAAAGTTGCTTGTGGTAATGGAGAGCAAACGCTTAGCAGGGATATCTACCGCTTAGGGCACCGTTTTGACTTCTTTCGCATGTTGTCCTTCTATTTTTCGACAATAGGGTTTTACATCAGCGCAATGTTGGTTGTCCTTACAGTCTATGCATACTTATACGGCAGACTTTACTTGTCATTAAGTGGAATGGAAAAGACAATTGTGAACTATGCCGCCACCAGGGGAAATAATGTTCTACAAGCAGCCATGGCTTCCCAATCTATTTTCCAATTAGGTCTTTTGACTTCCTTGCCCATCGATCATGGAAATTGGACTAGAAAGAGGGTTCAGAACTGCGTTAGGGGACATGATAATTATGCAGCTGCAACTAGCATCCGTTTTCTTCACCTTCTCTCTTGGCACCAAAGTTCATTATTATGGTCGAACTGTGCTGCACGGCGGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006075 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009555 GO:0009556 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010208 GO:0010769 GO:0010927 GO:0016043 GO:0016049 GO:0016051 GO:0019953 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0030154 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034293 GO:0034637 GO:0034645 GO:0040007 GO:0040008 GO:0043062 GO:0043170 GO:0043900 GO:0043934 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048236 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048646 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051273 GO:0051274 GO:0051321 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080092 GO:0085029 GO:1901576 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

358

Amino Acids

40.8

Weight (kDa)

9.68

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	30 - 297	4.8e-122	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	684, 1026
AciI	CCGC	4 cut(s)	415, 676, 840, 1066
AclI	AACGTT	1 cut(s)	536
AclWI	GGATC	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	846
AgsI	TTSAA	7 cut(s)	10, 254, 291, 409, 534, 575, 623
AhdI	GACNNNNNGTC	1 cut(s)	381
AjnI	CCWGG	4 cut(s)	112, 207, 341, 845
AleI	CACNNNNGTG	1 cut(s)	1066
AloI	GAACNNNNNNTCC	2 cut(s)	843, 875
AluBI	AGCT	6 cut(s)	70, 185, 230, 369, 626, 989
AluI	AGCT	6 cut(s)	70, 185, 230, 369, 626, 989
AlwI	GGATC	1 cut(s)	406
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	2 cut(s)	192, 339
ApeKI	GCWGC	5 cut(s)	22, 869, 986, 989, 1058
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	3 cut(s)	186, 328, 570
AspLEI	GCGC	1 cut(s)	749
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	551, 1004
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	268
BaeGI	GKGCMC	1 cut(s)	687
BanI	GGYRCC	2 cut(s)	684, 1026
BanII	GRGCYC	1 cut(s)	603
BauI	CACGAG	1 cut(s)	465
BbvI	GCAGC	5 cut(s)	9, 881, 976, 998, 1045
BccI	CCATC	1 cut(s)	929
BceAI	ACGGC	1 cut(s)	802
BciT130I	CCWGG	4 cut(s)	114, 209, 343, 847
BfaI	CTAG	3 cut(s)	26, 942, 996
BisI	GCNGC	6 cut(s)	23, 840, 870, 987, 990, 1059
BlpI	GCTNAGC	1 cut(s)	659
BlsI	GCNGC	6 cut(s)	24, 841, 871, 988, 991, 1060
Bme1390I	CCNGG	4 cut(s)	114, 209, 343, 847
Bme18I	GGWCC	1 cut(s)	268
BmeRI	GACNNNNNGTC	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	2 cut(s)	686, 1028
BmrFI	CCNGG	4 cut(s)	114, 209, 343, 847
BmsI	GCATC	2 cut(s)	504, 1008
Bpu10I	CCTNAGC	1 cut(s)	679
Bpu1102I	GCTNAGC	1 cut(s)	659
Bsa29I	ATCGAT	2 cut(s)	84, 924
BsaJI	CCNNGG	4 cut(s)	271, 490, 846, 873
Bsc4I	CCNNNNNNNGG	1 cut(s)	846
Bse1I	ACTGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	756
BseBI	CCWGG	4 cut(s)	114, 209, 343, 847
BseCI	ATCGAT	2 cut(s)	84, 924
BseDI	CCNNGG	4 cut(s)	271, 490, 846, 873
BseGI	GGATG	1 cut(s)	999
BseLI	CCNNNNNNNGG	1 cut(s)	846
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	1 cut(s)	192
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	5 cut(s)	9, 881, 976, 998, 1045
BsgI	GTGCAG	1 cut(s)	1044
BshFI	GGCC	2 cut(s)	194, 341
BshNI	GGYRCC	2 cut(s)	684, 1026
BshVI	ATCGAT	2 cut(s)	84, 924
BsiHKCI	CYCGRG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	984
BslI	CCNNNNNNNGG	1 cut(s)	846
BsmFI	GGGAC	1 cut(s)	984
BsnI	GGCC	2 cut(s)	194, 341
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	603, 687
Bsp143I	GATC	3 cut(s)	85, 411, 925
Bsp1720I	GCTNAGC	1 cut(s)	659
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	4 cut(s)	415, 676, 840, 1066
BspANI	GGCC	2 cut(s)	194, 341
BspCNI	CTCAG	1 cut(s)	495
BspDI	ATCGAT	2 cut(s)	84, 924
BspLI	GGNNCC	2 cut(s)	686, 1028
BspPI	GGATC	1 cut(s)	406
BspQI	GCTCTTC	1 cut(s)	192
BspT107I	GGYRCC	2 cut(s)	684, 1026
BsrDI	GCAATG	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	4 cut(s)	271, 490, 846, 873
BssMI	GATC	3 cut(s)	85, 411, 925
BssSI	CACGAG	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	873
Bst2BI	CACGAG	1 cut(s)	465
Bst2UI	CCWGG	4 cut(s)	114, 209, 343, 847
Bst4CI	ACNGT	3 cut(s)	689, 769, 1055
Bst6I	CTCTTC	2 cut(s)	5, 192
BstDEI	CTNAG	4 cut(s)	220, 503, 659, 679
BstDSI	CCRYGG	3 cut(s)	271, 490, 873
BstF5I	GGATG	1 cut(s)	999
BstHHI	GCGC	1 cut(s)	749
BstKTI	GATC	3 cut(s)	88, 414, 928
BstMBI	GATC	3 cut(s)	85, 411, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 632, 875
BstNI	CCWGG	4 cut(s)	114, 209, 343, 847
BstNSI	RCATGY	1 cut(s)	709
BstSCI	CCNGG	4 cut(s)	112, 207, 341, 845
BstSLI	GKGCMC	1 cut(s)	687
BstV1I	GCAGC	5 cut(s)	9, 881, 976, 998, 1045
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
Bsu15I	ATCGAT	2 cut(s)	84, 924
BsuRI	GGCC	2 cut(s)	194, 341
BsuTUI	ATCGAT	2 cut(s)	84, 924
BtgI	CCRYGG	3 cut(s)	271, 490, 873
BtsCI	GGATG	1 cut(s)	999
CfoI	GCGC	1 cut(s)	749
Cfr13I	GGNCC	1 cut(s)	268
ClaI	ATCGAT	2 cut(s)	84, 924
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	8 cut(s)	158, 202, 475, 563, 706, 874, 929, 974
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	4 cut(s)	220, 503, 659, 679
DpnI	GATC	3 cut(s)	87, 413, 927
DpnII	GATC	3 cut(s)	85, 411, 925
DraI	TTTAAA	1 cut(s)	235
DriI	GACNNNNNGTC	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	5, 192
Eam1105I	GACNNNNNGTC	1 cut(s)	381
EarI	CTCTTC	2 cut(s)	5, 192
Eco130I	CCWWGG	1 cut(s)	873
Eco24I	GRGCYC	1 cut(s)	603
Eco32I	GATATC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	174
EcoRII	CCWGG	4 cut(s)	112, 207, 341, 845
EcoRV	GATATC	1 cut(s)	670
EcoT14I	CCWWGG	1 cut(s)	873
EcoT22I	ATGCAT	1 cut(s)	778
EcoT38I	GRGCYC	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	8 cut(s)	161, 205, 478, 566, 709, 877, 932, 977
FalI	AAGNNNNNCTT	4 cut(s)	316, 348, 401, 433
FaqI	GGGAC	1 cut(s)	984
FatI	CATG	8 cut(s)	157, 201, 474, 562, 705, 873, 928, 973
Fnu4HI	GCNGC	6 cut(s)	23, 840, 870, 987, 990, 1059
FokI	GGATG	1 cut(s)	986
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	6 cut(s)	23, 840, 870, 987, 990, 1059
FspBI	CTAG	3 cut(s)	26, 942, 996
GlaI	GCGC	1 cut(s)	748
GluI	GCNGC	6 cut(s)	23, 840, 870, 987, 990, 1059
HaeIII	GGCC	2 cut(s)	194, 341
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	749
Hin1II	CATG	8 cut(s)	161, 205, 478, 566, 709, 877, 932, 977
Hin6I	GCGC	1 cut(s)	747
HinP1I	GCGC	1 cut(s)	747
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	1 cut(s)	450
HphI	GGTGA	2 cut(s)	551, 1004
Hpy166II	GTNNAC	3 cut(s)	48, 75, 832
Hpy188I	TCNGA	2 cut(s)	504, 957
Hpy188III	TCNNGA	4 cut(s)	89, 251, 305, 359
Hpy8I	GTNNAC	3 cut(s)	48, 75, 832
HpyAV	CCTTC	6 cut(s)	128, 257, 297, 577, 724, 1025
HpyCH4III	ACNGT	3 cut(s)	689, 769, 1055
HpyCH4IV	ACGT	2 cut(s)	280, 536
HpyCH4V	TGCA	6 cut(s)	39, 398, 776, 986, 992, 1061
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 632, 875
HpyF3I	CTNAG	4 cut(s)	220, 503, 659, 679
HpySE526I	ACGT	2 cut(s)	280, 536
Hsp92II	CATG	8 cut(s)	161, 205, 478, 566, 709, 877, 932, 977
HspAI	GCGC	1 cut(s)	747
Kzo9I	GATC	3 cut(s)	85, 411, 925
LguI	GCTCTTC	1 cut(s)	192
Lsp1109I	GCAGC	5 cut(s)	9, 881, 976, 998, 1045
LweI	GCATC	2 cut(s)	504, 1008
MaeI	CTAG	3 cut(s)	26, 942, 996
MaeII	ACGT	2 cut(s)	280, 536
MaeIII	GTNAC	3 cut(s)	16, 373, 553
MalI	GATC	3 cut(s)	87, 413, 927
MboI	GATC	3 cut(s)	85, 411, 925
MboII	GAAGA	8 cut(s)	22, 179, 236, 266, 324, 421, 445, 1001
MfeI	CAATTG	1 cut(s)	825
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	2 cut(s)	603, 687
MluCI	AATT	9 cut(s)	165, 214, 257, 291, 529, 825, 896, 934, 979
MnlI	CCTC	6 cut(s)	170, 259, 294, 502, 539, 942
Mph1103I	ATGCAT	1 cut(s)	778
MroXI	GAANNNNTTC	3 cut(s)	186, 328, 570
MseI	TTAA	5 cut(s)	234, 261, 528, 539, 806
MslI	CAYNNNNRTG	4 cut(s)	200, 435, 1042, 1066
MspA1I	CMGCKG	1 cut(s)	989
MspR9I	CCNGG	4 cut(s)	114, 209, 343, 847
MunI	CAATTG	1 cut(s)	825
MvaI	CCWGG	4 cut(s)	114, 209, 343, 847
MwoI	GCNNNNNNNGC	3 cut(s)	191, 632, 875
NcoI	CCATGG	1 cut(s)	873
NdeII	GATC	3 cut(s)	85, 411, 925
NlaIII	CATG	8 cut(s)	161, 205, 478, 566, 709, 877, 932, 977
NlaIV	GGNNCC	2 cut(s)	686, 1028
NmuCI	GTSAC	2 cut(s)	16, 373
NsiI	ATGCAT	1 cut(s)	778
NspI	RCATGY	1 cut(s)	709
OliI	CACNNNNGTG	1 cut(s)	1066
PaeR7I	CTCGAG	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	192
PdmI	GAANNNNTTC	3 cut(s)	186, 328, 570
PfeI	GAWTC	1 cut(s)	450
PkrI	GCNGC	6 cut(s)	24, 841, 871, 988, 991, 1060
Psp1406I	AACGTT	1 cut(s)	536
Psp6I	CCWGG	4 cut(s)	112, 207, 341, 845
PspGI	CCWGG	4 cut(s)	112, 207, 341, 845
PspN4I	GGNNCC	2 cut(s)	686, 1028
PspPI	GGNCC	1 cut(s)	268
PspXI	VCTCGAGB	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	411
PvuII	CAGCTG	1 cut(s)	989
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	4 cut(s)	200, 435, 1042, 1066
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	5 cut(s)	234, 261, 528, 539, 806
SatI	GCNGC	6 cut(s)	23, 840, 870, 987, 990, 1059
Sau3AI	GATC	3 cut(s)	85, 411, 925
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	4 cut(s)	114, 209, 343, 847
SduI	GDGCHC	2 cut(s)	603, 687
SfaNI	GCATC	2 cut(s)	504, 1008
Sfr274I	CTCGAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	4 cut(s)	200, 435, 1042, 1066
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	9 cut(s)	165, 214, 257, 291, 529, 825, 896, 934, 979
SsiI	CCGC	4 cut(s)	415, 676, 840, 1066
SspMI	CTAG	3 cut(s)	26, 942, 996
StyD4I	CCNGG	4 cut(s)	112, 207, 341, 845
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	3 cut(s)	689, 769, 1055
TaiI	ACGT	2 cut(s)	283, 539
TaqI	TCGA	5 cut(s)	84, 175, 725, 924, 1049
TasI	AATT	9 cut(s)	165, 214, 257, 291, 529, 825, 896, 934, 979
TauI	GCSGC	1 cut(s)	842
TfiI	GAWTC	1 cut(s)	450
Tru1I	TTAA	5 cut(s)	234, 261, 528, 539, 806
Tru9I	TTAA	5 cut(s)	234, 261, 528, 539, 806
TseFI	GTSAC	2 cut(s)	16, 373
TseI	GCWGC	5 cut(s)	22, 869, 986, 989, 1058
Tsp45I	GTSAC	2 cut(s)	16, 373
TspDTI	ATGAA	6 cut(s)	17, 70, 218, 324, 579, 1026
TspGWI	ACGGA	2 cut(s)	288, 992
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XhoI	CTCGAG	1 cut(s)	174
XmnI	GAANNNNTTC	3 cut(s)	186, 328, 570
XspI	CTAG	3 cut(s)	26, 942, 996
Zsp2I	ATGCAT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.