Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Reverse (-)

7141956 .. 7142306

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG040000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTGGTTGCATACCAGATATATGCATGGAACACAAAAGGCAAAGAAAGATTCCCCTGCTGATGAAATTTTGTATCTAATGAAAACCAGTGGAGCACTTCAAATTGCCTATGTTGAGGAGGTTTCAGCTGGTAGAGATGAGAAGGAATATTATTCTGTTCTTGTCAAGTATGATAATCAATTAGAGAAAGAAATGGAAATCTATCGCATTAAGTTACCTGGTCCTTTGAAGCTCGGAGAGGGCAAACCAGAGAATCAAAATCATGCCATTATCTTCACTCGTGGTGATGCGGTTCAGATCATTGATATGAACCAAGACAATTATTTTGAGGAGGCTAGGCACTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009870 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010150 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0030054 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0035690 GO:0042221 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0045229 GO:0046677 GO:0048229 GO:0048366 GO:0048367 GO:0048518 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055044 GO:0065007 GO:0070727 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090693 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

116

Amino Acids

13.51

Weight (kDa)

5.8

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	12 - 112	3e-37	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	101, 229
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	2 cut(s)	128, 232
AluI	AGCT	2 cut(s)	128, 232
Alw21I	GWGCWC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	66
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	219
BfaI	CTAG	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	2 cut(s)	131, 344
BsiHKAI	GWGCWC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	297
BssSI	CACGAG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	297
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	221
CsiI	ACCWGGT	1 cut(s)	217
CviAII	CATG	2 cut(s)	26, 263
CviJI	RGCY	3 cut(s)	128, 232, 335
CviKI_1	RGCY	3 cut(s)	128, 232, 335
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	27
FaeI	CATG	2 cut(s)	29, 266
FaiI	YATR	8 cut(s)	12, 21, 23, 27, 111, 171, 264, 308
FatI	CATG	2 cut(s)	25, 262
FspBI	CTAG	1 cut(s)	336
Hin1II	CATG	2 cut(s)	29, 266
HinfI	GANTC	2 cut(s)	50, 253
HphI	GGTGA	1 cut(s)	296
Hpy188I	TCNGA	2 cut(s)	236, 297
HpyAV	CCTTC	1 cut(s)	136
HpyCH4V	TGCA	2 cut(s)	10, 25
Hsp92II	CATG	2 cut(s)	29, 266
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	7 cut(s)	28, 69, 100, 114, 204, 231, 261
LweI	GCATC	1 cut(s)	277
MabI	ACCWGGT	1 cut(s)	217
MaeI	CTAG	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	4 cut(s)	66, 102, 179, 319
MnlI	CCTC	5 cut(s)	109, 112, 232, 322, 325
Mph1103I	ATGCAT	1 cut(s)	27
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	2 cut(s)	29, 266
NsiI	ATGCAT	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	50, 253
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	4 cut(s)	123, 130, 220, 234
SexAI	ACCWGGT	1 cut(s)	217
SfaNI	GCATC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	66, 102, 179, 319
SsiI	CCGC	1 cut(s)	290
SspI	AATATT	1 cut(s)	149
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	217
TasI	AATT	4 cut(s)	66, 102, 179, 319
TfiI	GAWTC	2 cut(s)	50, 253
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	78, 95, 323
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	66
XspI	CTAG	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.