Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Forward (+)

60267201 .. 60273609

Gene Structure 6409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG435600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATCACCACATCGTCTTCTTCACCGTTACCACCGTCGAGCAGTGGAGGCTATGCACGTGCGGATGTTCTTCTAGCACTACAACGTCCACGGCGACATGAGCCGGTCTCGCCGGAGGTGATGGACTCGATCTGGAAGAACAAGGTCTACATAAAGGGCAGGCTGGAGATGTCGGCCGGCGGTAGCAAGAACACTGAGGGTGAGTACGCCAAGCTGGAGCACGAAGTGGTGTCTGGAGCCGTGGAGAGCTTCAAGATATATGGAACACAAAAGGCAAAGAAAGATCCCCATGCTGATGAAATTTTATATCTGATGAAAACCAATGAAGCACTTCAAATTGCCTATGTTGACGAGGTTTCAACTGGCAGGGATGAGAAGGAATATTATTCTGTTCTTGTCAAGTATGATAATCAATTAGAGAAAGAAGTGGAAATCTATTGCATTAAGTTGCCTGGTCCCTTGAAGCTCGGAGAGGGCAAACCAGAGAATCAAAATCATGCCATTATCTTCACTCATGGTGATGAGGTTCAGACCATTGATATGAACCGAGACAATTATTTTGAGGAGGCACTCAAAATGAGGAATCTATTAGAAGAATACAGGCGCTATCATGGTATCCGGAAGCCTACGATCTTGGGAGTTAGAGAGCATGTCTTGACTGGTTCTGTCTCATCACTTGCTTGGTTTATGTCAGCTCAGAAAACAAGTTTTGTCACCTTGGGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009870 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010150 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0030054 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0035690 GO:0042221 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0045229 GO:0046677 GO:0048229 GO:0048366 GO:0048367 GO:0048518 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055044 GO:0065007 GO:0070727 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090693 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

242

Amino Acids

27.36

Weight (kDa)

6.2

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	81 - 242	2.4e-53	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AccIII	TCCGGA	1 cut(s)	618
AciI	CCGC	2 cut(s)	62, 180
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	300
AcvI	CACGTG	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	226
AfaI	GTAC	1 cut(s)	206
AgsI	TTSAA	4 cut(s)	253, 335, 360, 463
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	4 cut(s)	214, 249, 466, 695
AluI	AGCT	4 cut(s)	214, 249, 466, 695
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	112, 543, 673
AlwI	GGATC	1 cut(s)	278
Aor13HI	TCCGGA	1 cut(s)	618
AoxI	GGCC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	300
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
Asp700I	GAANNNNTTC	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	5 cut(s)	15, 130, 212, 530, 706
AvaII	GGWCC	1 cut(s)	455
BbrPI	CACGTG	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	2 cut(s)	107, 224
BciT130I	CCWGG	1 cut(s)	453
BciVI	GTATCC	1 cut(s)	626
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	3 cut(s)	112, 543, 673
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	607
BfuI	GTATCC	1 cut(s)	626
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	238, 457
BmrFI	CCNGG	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	9
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpmI	CTGGAG	3 cut(s)	185, 236, 255
BsaAI	YACGTR	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	3 cut(s)	89, 240, 717
BsaWI	WCCGGW	1 cut(s)	618
Bse118I	RCCGGY	2 cut(s)	103, 176
Bse1I	ACTGG	2 cut(s)	367, 664
BseAI	TCCGGA	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	3 cut(s)	89, 240, 717
BseGI	GGATG	2 cut(s)	70, 376
BseMII	CTCAG	2 cut(s)	186, 710
BseNI	ACTGG	2 cut(s)	367, 664
BseRI	GAGGAG	1 cut(s)	578
BseX3I	CGGCCG	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	4 cut(s)	104, 113, 177, 619
BslFI	GGGAC	1 cut(s)	441
BsmAI	GTCTC	3 cut(s)	112, 543, 673
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp13I	TCCGGA	1 cut(s)	618
Bsp143I	GATC	4 cut(s)	3, 129, 283, 630
BspACI	CCGC	2 cut(s)	62, 180
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	187, 709
BspEI	TCCGGA	1 cut(s)	618
BspLI	GGNNCC	2 cut(s)	238, 457
BspPI	GGATC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	112
BsrFI	RCCGGY	2 cut(s)	103, 176
BsrI	ACTGG	2 cut(s)	367, 664
BssAI	RCCGGY	2 cut(s)	103, 176
BssECI	CCNNGG	3 cut(s)	89, 240, 717
BssMI	GATC	4 cut(s)	3, 129, 283, 630
BssT1I	CCWWGG	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	3 cut(s)	27, 36, 726
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	161, 178
BstDEI	CTNAG	2 cut(s)	195, 696
BstDSI	CCRYGG	2 cut(s)	89, 240
BstF5I	GGATG	2 cut(s)	70, 376
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	4 cut(s)	6, 132, 286, 633
BstMAI	GTCTC	3 cut(s)	112, 543, 673
BstMBI	GATC	4 cut(s)	3, 129, 283, 630
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 100, 109
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BstZI	CGGCCG	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	2 cut(s)	89, 240
BtsCI	GGATG	2 cut(s)	70, 376
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	49, 192
Cac8I	GCNNGC	2 cut(s)	161, 178
CfoI	GCGC	1 cut(s)	606
Cfr10I	RCCGGY	2 cut(s)	103, 176
Cfr13I	GGNCC	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	6 cut(s)	98, 290, 497, 515, 611, 650
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	195, 696
DpnI	GATC	4 cut(s)	5, 131, 285, 632
DpnII	GATC	4 cut(s)	3, 129, 283, 630
DraIII	CACNNNGTG	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	174
EagI	CGGCCG	1 cut(s)	174
EclXI	CGGCCG	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	717
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	455
Eco52I	CGGCCG	1 cut(s)	174
Eco72I	CACGTG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	6 cut(s)	101, 293, 500, 518, 614, 653
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	6 cut(s)	97, 289, 496, 514, 610, 649
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	2 cut(s)	77, 383
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	605
GsuI	CTGGAG	3 cut(s)	185, 236, 255
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	4 cut(s)	104, 113, 177, 619
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	6 cut(s)	101, 293, 500, 518, 614, 653
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	125, 487, 583
HpaII	CCGG	4 cut(s)	104, 113, 177, 619
HphI	GGTGA	5 cut(s)	15, 130, 212, 530, 706
Hpy166II	GTNNAC	3 cut(s)	89, 148, 349
Hpy188I	TCNGA	4 cut(s)	312, 470, 531, 699
Hpy188III	TCNNGA	5 cut(s)	133, 234, 253, 619, 655
Hpy8I	GTNNAC	3 cut(s)	89, 148, 349
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	3 cut(s)	27, 36, 726
HpyCH4IV	ACGT	2 cut(s)	58, 85
HpyCH4V	TGCA	2 cut(s)	56, 441
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 100, 109
HpyF3I	CTNAG	2 cut(s)	195, 696
HpySE526I	ACGT	2 cut(s)	58, 85
Hsp92II	CATG	6 cut(s)	101, 293, 500, 518, 614, 653
HspAI	GCGC	1 cut(s)	604
Kpn2I	TCCGGA	1 cut(s)	618
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 129, 283, 630
LmnI	GCTCC	2 cut(s)	217, 236
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	2 cut(s)	58, 85
MaeIII	GTNAC	2 cut(s)	27, 712
MalI	GATC	4 cut(s)	5, 131, 285, 632
MboI	GATC	4 cut(s)	3, 129, 283, 630
MboII	GAAGA	6 cut(s)	9, 12, 62, 148, 499, 605
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	300, 336, 413, 553
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	9 cut(s)	41, 109, 190, 346, 466, 517, 556, 559, 573
MroI	TCCGGA	1 cut(s)	618
MroNI	GCCGGC	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	3 cut(s)	294, 519, 539
MspI	CCGG	4 cut(s)	104, 113, 177, 619
MspR9I	CCNGG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	3 cut(s)	48, 100, 109
NaeI	GCCGGC	1 cut(s)	178
NdeII	GATC	4 cut(s)	3, 129, 283, 630
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	6 cut(s)	101, 293, 500, 518, 614, 653
NlaIV	GGNNCC	2 cut(s)	238, 457
NmuCI	GTSAC	1 cut(s)	712
NspI	RCATGY	1 cut(s)	653
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PdiI	GCCGGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	487, 583
PleI	GAGTC	1 cut(s)	119
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	451
PspCI	CACGTG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	238, 457
PspPI	GGNCC	1 cut(s)	455
PsrI	GAACNNNNNNTAC	2 cut(s)	131, 163
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	3 cut(s)	294, 519, 539
SaqAI	TTAA	1 cut(s)	444
Sau3AI	GATC	4 cut(s)	3, 129, 283, 630
Sau96I	GGNCC	1 cut(s)	455
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	1 cut(s)	222
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	3 cut(s)	294, 519, 539
Sse9I	AATT	4 cut(s)	300, 336, 413, 553
SsiI	CCGC	2 cut(s)	62, 180
SspI	AATATT	1 cut(s)	383
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	3 cut(s)	27, 36, 726
TaiI	ACGT	2 cut(s)	61, 88
TaqI	TCGA	2 cut(s)	38, 128
TasI	AATT	4 cut(s)	300, 336, 413, 553
TfiI	GAWTC	2 cut(s)	487, 583
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	49, 199
TseFI	GTSAC	1 cut(s)	712
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	4 cut(s)	312, 329, 339, 557
TspRI	CASTG	2 cut(s)	49, 199
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	1 cut(s)	300
XceI	RCATGY	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.