Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Forward (+)

55828765 .. 55829242

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG428300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGATCATGGAAATAGGACTTGAAAGAGGGTTCAGAACTGCATTAGGGGACACGATAATAATGCAGCTGCAGCTAGCATCAGTTTTCTTTACTTTCTCACTGGGTACAAAGGTTCATTACTATGGGAGAACAATCCTGCATGGTGGGGCTAAGTACAGAGCAACTGGTCGTGGCTTTGTTGTTCGGCATGAAAGGTTTGGTGAAAACTACAGGATGTACTCACGGAGTCACTTTACAAAAGGCCTGGAGCTTATGATACTGCAATGGAGTTGTGTGATATATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006075 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009555 GO:0009556 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010208 GO:0010769 GO:0010927 GO:0016043 GO:0016049 GO:0016051 GO:0019953 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0030154 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034293 GO:0034637 GO:0034645 GO:0040007 GO:0040008 GO:0043062 GO:0043170 GO:0043900 GO:0043934 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048236 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048646 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051273 GO:0051274 GO:0051321 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080092 GO:0085029 GO:1901576 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

95

Amino Acids

11.08

Weight (kDa)

9.91

Isoelectric Point (pI)

29.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	1 - 87	1.2e-23	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	106, 155, 218
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	3 cut(s)	67, 73, 250
AluI	AGCT	3 cut(s)	67, 73, 250
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	3 cut(s)	64, 67, 70
AsuHPI	GGTGA	1 cut(s)	212
AsuNHI	GCTAGC	1 cut(s)	73
BaeI	ACNNNNGTAYC	2 cut(s)	96, 129
BbvI	GCAGC	3 cut(s)	54, 76, 82
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	2 cut(s)	68, 208
BisI	GCNGC	3 cut(s)	65, 68, 71
BlsI	GCNGC	3 cut(s)	66, 69, 72
Bme1390I	CCNGG	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	86
BmtI	GCTAGC	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	266
Bse1I	ACTGG	2 cut(s)	105, 169
Bse3DI	GCAATG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	105, 169
BseXI	GCAGC	3 cut(s)	54, 76, 82
BshFI	GGCC	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	72
BspOI	GCTAGC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	105, 169
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	2 cut(s)	68, 208
BstV1I	GCAGC	3 cut(s)	54, 76, 82
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	75
Csp6I	GTAC	3 cut(s)	105, 154, 217
CviAII	CATG	3 cut(s)	7, 140, 188
CviJI	RGCY	6 cut(s)	67, 73, 149, 174, 243, 250
CviKI_1	RGCY	6 cut(s)	67, 73, 149, 174, 243, 250
CviQI	GTAC	3 cut(s)	105, 154, 217
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco147I	AGGCCT	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	243
FaeI	CATG	3 cut(s)	10, 143, 191
FaiI	YATR	6 cut(s)	8, 123, 141, 189, 254, 280
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	6, 139, 187
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	65, 68, 71
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	3 cut(s)	65, 68, 71
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	3 cut(s)	65, 68, 71
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	10, 143, 191
HinfI	GANTC	1 cut(s)	226
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	1 cut(s)	35
HpyCH4V	TGCA	5 cut(s)	41, 64, 70, 139, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	10, 143, 191
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	6 cut(s)	86, 149, 150, 196, 230, 257
Lsp1109I	GCAGC	3 cut(s)	54, 76, 82
LweI	GCATC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	1 cut(s)	20
MseI	TTAA	1 cut(s)	286
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	1 cut(s)	3
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	3 cut(s)	10, 143, 191
NmuCI	GTSAC	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	243
PkrI	GCNGC	3 cut(s)	66, 69, 72
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	3 cut(s)	106, 155, 218
RsaNI	GTAC	3 cut(s)	105, 154, 217
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	3 cut(s)	65, 68, 71
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	5 cut(s)	69, 75, 114, 197, 252
SfaNI	GCATC	1 cut(s)	86
SfcI	CTRYAG	2 cut(s)	68, 208
SmiMI	CAYNNNNRTG	1 cut(s)	120
SseBI	AGGCCT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	243
TatI	WGTACW	2 cut(s)	153, 216
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	3 cut(s)	64, 67, 70
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	104, 204
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	105
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.