pycom09g06990

1,3-beta-glucan synthase component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0006955
Physical Location & Seq
Forward (+)
5161719 .. 5163342
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g06990.1

Sequence Viewer

Length: 798 bp
ATGCTAACGTATCCATCTCTACGTGTTGCTTACATAGATACAACGGAGGAGCAAGTGAATGGAAAACCCCAGAAAACTTACTTTTCTGTTCTAGTCAAGGGAGGTGACAAATGGGAAGAGGAAATATACCGTATCAAGCTTCCAGGTCCTCCTACAGATATTGGCGAAGGAAGACCTGAAAATCAAAACCATGCCATTATCTTTACTCGCGGAGAAGCCCTGCAGACAATAGACATGAATCAGGATAATTACTTTGAAGAAGCTTTCAAAATGAGAAATGTGTTGGAGGAATTCCTAAAGCGTCGTCGTGGGAACCGAAAACCCACAATATTGGGTCTAAGGGAGCATATTTTCACTGGAAGTGTTTCATCACTTGCTTGGTTCATGTCGAATCAAGAGACCAGTTTTGTAACTATTGGCCAAAGAATTTTGGCAAATCCACTGAGGGTACGGTTCCATTATGGTCATCCTGATATATTTGATAGAATCTTCCACATAACAAGGGGTGGCATAAGCAAAGCTTCAAAAATAATAAACTTGAGCGAGGATATATTTGCAGGGTACAATTCAACTATGCGTGGGGGGTTTATAACGCATCACGAGTATATCCAAGTAGGCAAGGGGCGTGACGTGGGAATGAACCAAATATCACTTTTTGAGGCTAAGGTTTCAAATGGAAATGGAGAACAAACACTTAGCCGTGATGTTTACCGGCTTGGGCGTCGGTTTGATTTCTTCAGAATGCTGTCCTTTTACTTCACAACAATTGGATTCTATTTTAGTAGTATGGTATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glucan_synthase

Protein Analysis

266

Amino Acids

30.62

Weight (kDa)

9.23

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glucan_synthase PF02364 2 - 264 1.6e-121 1,3-beta-glucan synthase component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
AccII CGCG 1 cut(s) 210
AciI CCGC 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 2 cut(s) 290, 426
AcuI CTGAAG 1 cut(s) 721
AcyI GRCGYC 1 cut(s) 721
AfaI GTAC 2 cut(s) 450, 563
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 5 cut(s) 257, 268, 525, 570, 672
AjiI CACGTC 1 cut(s) 631
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 3 cut(s) 139, 263, 521
AluI AGCT 3 cut(s) 139, 263, 521
Alw26I GTCTC 1 cut(s) 392
AoxI GGCC 1 cut(s) 418
ApoI RAATTY 2 cut(s) 290, 426
Asp700I GAANNNNTTC 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 146
BalI TGGCCA 1 cut(s) 420
BauI CACGAG 1 cut(s) 599
BbsI GAAGAC 1 cut(s) 178
BccI CCATC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 1 cut(s) 144
BciVI GTATCC 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 2 cut(s) 92, 796
BfmI CTRYAG 2 cut(s) 153, 221
BfuI GTATCC 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 631
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 314, 455
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 559
BsaAI YACGTR 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 721
BsaI GGTCTC 1 cut(s) 392
Bse118I RCCGGY 1 cut(s) 711
Bse1I ACTGG 2 cut(s) 361, 402
BseBI CCWGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 466
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 2 cut(s) 361, 402
BseRI GAGGAG 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 712
BsmAI GTCTC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 747
BsnI GGCC 1 cut(s) 420
Bso31I GGTCTC 1 cut(s) 392
BspACI CCGC 1 cut(s) 210
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 1 cut(s) 435
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 314, 455
BspMAI CTGCAG 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 392
BsrFI RCCGGY 1 cut(s) 711
BsrI ACTGG 2 cut(s) 361, 402
BssAI RCCGGY 1 cut(s) 711
BssNI GRCGYC 1 cut(s) 721
BssSI CACGAG 1 cut(s) 599
Bst2BI CACGAG 1 cut(s) 599
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 131, 453
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 721
BstBAI YACGTR 1 cut(s) 23
BstDEI CTNAG 4 cut(s) 338, 443, 663, 695
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 392
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 2 cut(s) 153, 221
BstUI CGCG 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 331
BsuI GTATCC 1 cut(s) 21
BsuRI GGCC 1 cut(s) 420
BtrI CACGTC 1 cut(s) 631
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 2 cut(s) 354, 440
Cfr10I RCCGGY 1 cut(s) 711
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 2 cut(s) 290, 710
Csp6I GTAC 2 cut(s) 449, 562
CviAII CATG 3 cut(s) 191, 235, 385
CviJI RGCY 8 cut(s) 139, 218, 263, 420, 521, 662, 699, 715
CviKI_1 RGCY 8 cut(s) 139, 218, 263, 420, 521, 662, 699, 715
CviQI GTAC 2 cut(s) 449, 562
DdeI CTNAG 4 cut(s) 338, 443, 663, 695
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 721
EcoO109I RGGNCCY 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 142
FaeI CATG 3 cut(s) 194, 238, 388
FalI AAGNNNNNCTT 2 cut(s) 505, 537
FatI CATG 3 cut(s) 190, 234, 384
FokI GGATG 1 cut(s) 453
FspBI CTAG 2 cut(s) 92, 796
HaeIII GGCC 1 cut(s) 420
HapII CCGG 1 cut(s) 712
HgaI GACGC 2 cut(s) 290, 710
Hin1I GRCGYC 1 cut(s) 721
Hin1II CATG 3 cut(s) 194, 238, 388
HindIII AAGCTT 3 cut(s) 137, 261, 519
HinfI GANTC 4 cut(s) 238, 391, 486, 771
HpaII CCGG 1 cut(s) 712
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 1 cut(s) 740
Hpy188III TCNNGA 4 cut(s) 242, 395, 470, 599
Hpy8I GTNNAC 1 cut(s) 709
Hpy99I CGWCG 3 cut(s) 306, 309, 726
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 131, 453
HpyCH4IV ACGT 3 cut(s) 8, 22, 630
HpyCH4V TGCA 2 cut(s) 223, 557
HpyF3I CTNAG 4 cut(s) 338, 443, 663, 695
HpySE526I ACGT 3 cut(s) 8, 22, 630
Hsp92I GRCGYC 1 cut(s) 721
Hsp92II CATG 3 cut(s) 194, 238, 388
LmnI GCTCC 2 cut(s) 49, 343
LweI GCATC 1 cut(s) 604
MaeI CTAG 2 cut(s) 92, 796
MaeII ACGT 3 cut(s) 8, 22, 630
MaeIII GTNAC 3 cut(s) 104, 409, 626
MboII GAAGA 5 cut(s) 128, 183, 269, 481, 727
MfeI CAATTG 1 cut(s) 765
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 5 cut(s) 247, 290, 426, 565, 765
MluNI TGGCCA 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 8 cut(s) 40, 95, 112, 159, 280, 438, 538, 652
Mox20I TGGCCA 1 cut(s) 420
MroXI GAANNNNTTC 1 cut(s) 364
MscI TGGCCA 1 cut(s) 420
Msp20I TGGCCA 1 cut(s) 420
MspI CCGG 1 cut(s) 712
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 765
Mva1269I GAATGC 1 cut(s) 747
MvaI CCWGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 210
NlaIII CATG 3 cut(s) 194, 238, 388
NlaIV GGNNCC 2 cut(s) 314, 455
NmuCI GTSAC 2 cut(s) 104, 626
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PctI GAATGC 1 cut(s) 747
PdmI GAANNNNTTC 1 cut(s) 364
PfeI GAWTC 4 cut(s) 238, 391, 486, 771
Ppu21I YACGTR 1 cut(s) 23
PpuMI RGGWCCY 1 cut(s) 146
PsiI TTATAA 1 cut(s) 590
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 314, 455
PspPI GGNCC 1 cut(s) 146
PspPPI RGGWCCY 1 cut(s) 146
PstI CTGCAG 1 cut(s) 225
RsaI GTAC 2 cut(s) 450, 563
RsaNI GTAC 2 cut(s) 449, 562
Sau96I GGNCC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 144
SfaNI GCATC 1 cut(s) 604
SfcI CTRYAG 2 cut(s) 153, 221
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
Sse9I AATT 5 cut(s) 247, 290, 426, 565, 765
SsiI CCGC 1 cut(s) 210
SspI AATATT 1 cut(s) 330
SspMI CTAG 2 cut(s) 92, 796
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 2 cut(s) 131, 453
TaiI ACGT 3 cut(s) 11, 25, 633
TaqI TCGA 1 cut(s) 389
TasI AATT 5 cut(s) 247, 290, 426, 565, 765
TfiI GAWTC 4 cut(s) 238, 391, 486, 771
TscAI CASTG 2 cut(s) 361, 447
TseFI GTSAC 2 cut(s) 104, 626
Tsp45I GTSAC 2 cut(s) 104, 626
TspDTI ATGAA 4 cut(s) 251, 357, 373, 653
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 2 cut(s) 361, 447
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 2 cut(s) 290, 426
XmnI GAANNNNTTC 1 cut(s) 364
XspI CTAG 2 cut(s) 92, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.