Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Forward (+)

5182631 .. 5184287

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTTTCTAAACTCAGTCCAACCCAAAGAGAAATTTAGGCTAAAAGCTAAATGGAGAAGTGAGGTCAGATTCCATAAAAAATTTAGCCCAAAAGTGGCTGTGGGCCCCACCGAAATGTTTGCTTTTCAGCGTTTGGGCGCCAAACACAGCCCAACCCAACCCCCAACGTGCCTAACGCGCGAGTCTTCCGACCGCGAGGGACCAACCCACATGGACCTGTCGGCCACATTCCGCCTTTTTTCTGAGAATTACAGACTCTACTCACGCAGTCACTTTGTGAAAGGGTTGGAATTGCTGATTCTGCTGATTGTTTATGGAGTCTATGGGGAATCTCACAGGAGTTCAAATCTTTTTCGGTTCATCATTTTCTCCATGTGGTTTCTCGTTGCTTCGTGGTTGTTTTCTCCTTCCATATTCAATCCGTCCAACTTTGACTGGCAGAAAATTGTAGATGACTGGACAGATTGGAAGAGGTGGATGGGAAACCGTGGTGGTATTGGGATATCACTTGAAAAAAGTTGGGAATCATGGTGGTATGAAGAACAGGAACACCTCAAATACACAGATTTCCGGGGAAGAATTCTTGAGATTATACTTGCGCTTCGGTTCCTTATTTACCAATATGGAATTGTTTACCACCTTGATATAGCTCATCACAGCAAGAGTTTACGGATAGTTTCCCTGGGTGGACGAAGATTTGGCACCGACTTTCAGCTCAGTTTCAGGATTTTGAAAGCGTTTCTGCTTCTTGGTTTCATGTCTGTCATGATTGTCCTATTTGTTGTTTGCGGCCTTACCATTTCAGATCTATTTGCTGCAATCCCTGCCTTTCTACCCACAGGCTGGGCCCTTCTTCTGTGGATCGATCGGACAATCATGCAGGCCGTTGTTCAAAGGGCTAGGACTCTGGGAATCAATCAAGGAGCTTGGAAGAGCATACGATTACATAATGGGACTAGTAATCTTCATGTCGATAGCCATTTTGTCATGGTTCCCGTTTATATCAGAGTTCCAAACACGTATCCTCTTCAACCAAGCAGTCAGCAGAGGCCTGCAGATTTCCAGGATTCTTCCAGGAAGGAAAGACTGCTACAGAAACTTAAAAATTGCCATCTGACATGGAAGCTTTTAGCATCTCAACTTCATATGCGCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003843 GO:0006810 GO:0008150 GO:0008194 GO:0010232 GO:0010233 GO:0016740 GO:0016757 GO:0016758 GO:0032501 GO:0033036 GO:0033037 GO:0035251 GO:0046527 GO:0051179 GO:0051234 GO:0052545 GO:0080165

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

386

Amino Acids

45.05

Weight (kDa)

9.97

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	137, 701
AccB7I	CCANNNNNTGG	1 cut(s)	843
AccII	CGCG	4 cut(s)	178, 180, 195, 1152
AciI	CCGC	3 cut(s)	193, 232, 789
AclWI	GGATC	1 cut(s)	869
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	3 cut(s)	32, 80, 579
AcyI	GRCGYC	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	277
AfiI	CCNNNNNNNGG	2 cut(s)	94, 843
AflIII	ACRYGT	1 cut(s)	1017
AgsI	TTSAA	6 cut(s)	345, 418, 512, 733, 893, 1031
AhlI	ACTAGT	1 cut(s)	956
AjnI	CCWGG	3 cut(s)	681, 1062, 1073
AluBI	AGCT	5 cut(s)	47, 650, 715, 926, 1126
AluI	AGCT	5 cut(s)	47, 650, 715, 926, 1126
AlwI	GGATC	1 cut(s)	869
AoxI	GGCC	6 cut(s)	103, 222, 790, 846, 882, 1049
ApaI	GGGCCC	2 cut(s)	107, 850
ApeKI	GCWGC	1 cut(s)	815
ApoI	RAATTY	3 cut(s)	32, 80, 579
AspLEI	GCGC	4 cut(s)	140, 180, 601, 1152
AspS9I	GGNCC	6 cut(s)	103, 104, 200, 214, 846, 847
AsuC2I	CCSGG	1 cut(s)	572
AvaII	GGWCC	2 cut(s)	200, 214
BaeGI	GKGCMC	2 cut(s)	107, 850
BanI	GGYRCC	2 cut(s)	137, 701
BanII	GRGCYC	2 cut(s)	107, 850
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	802
BccI	CCATC	2 cut(s)	472, 1119
BceAI	ACGGC	1 cut(s)	869
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	3 cut(s)	683, 1064, 1075
BciVI	GTATCC	1 cut(s)	1032
BcnI	CCSGG	1 cut(s)	572
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	2 cut(s)	900, 957
BfmI	CTRYAG	2 cut(s)	1053, 1091
BfoI	RGCGCY	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	1032
BglII	AGATCT	1 cut(s)	805
BisI	GCNGC	2 cut(s)	790, 816
BlsI	GCNGC	2 cut(s)	791, 817
Bme1390I	CCNGG	4 cut(s)	572, 683, 1064, 1075
Bme18I	GGWCC	2 cut(s)	200, 214
BmgT120I	GGNCC	6 cut(s)	103, 104, 200, 214, 846, 847
BmiI	GGNNCC	8 cut(s)	105, 106, 139, 201, 608, 703, 848, 993
BmrFI	CCNGG	4 cut(s)	572, 683, 1064, 1075
BmsI	GCATC	1 cut(s)	1142
BpiI	GAAGAC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	572
Bsa29I	ATCGAT	1 cut(s)	864
BsaAI	YACGTR	1 cut(s)	1020
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	4 cut(s)	487, 571, 681, 682
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 843
Bse1I	ACTGG	2 cut(s)	440, 461
BseBI	CCWGG	3 cut(s)	683, 1064, 1075
BseCI	ATCGAT	1 cut(s)	864
BseDI	CCNNGG	4 cut(s)	487, 571, 681, 682
BseGI	GGATG	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	94, 843
BseMII	CTCAG	3 cut(s)	27, 234, 730
BseNI	ACTGG	2 cut(s)	440, 461
BseSI	GKGCMC	2 cut(s)	107, 850
BseXI	GCAGC	1 cut(s)	802
BseYI	CCCAGC	1 cut(s)	843
Bsh1236I	CGCG	4 cut(s)	178, 180, 195, 1152
Bsh1285I	CGRYCG	2 cut(s)	193, 868
BshFI	GGCC	6 cut(s)	105, 224, 792, 848, 884, 1051
BshNI	GGYRCC	2 cut(s)	137, 701
BshVI	ATCGAT	1 cut(s)	864
BsiEI	CGRYCG	2 cut(s)	193, 868
BsiSI	CCGG	1 cut(s)	571
BslFI	GGGAC	2 cut(s)	213, 967
BslI	CCNNNNNNNGG	2 cut(s)	94, 843
BsmFI	GGGAC	2 cut(s)	213, 967
BsnI	GGCC	6 cut(s)	105, 224, 792, 848, 884, 1051
Bsp120I	GGGCCC	2 cut(s)	103, 846
Bsp1286I	GDGCHC	2 cut(s)	107, 850
Bsp143I	GATC	3 cut(s)	805, 861, 865
BspACI	CCGC	3 cut(s)	193, 232, 789
BspANI	GGCC	6 cut(s)	105, 224, 792, 848, 884, 1051
BspCNI	CTCAG	3 cut(s)	26, 235, 729
BspDI	ATCGAT	1 cut(s)	864
BspFNI	CGCG	4 cut(s)	178, 180, 195, 1152
BspHI	TCATGA	1 cut(s)	765
BspLI	GGNNCC	8 cut(s)	105, 106, 139, 201, 608, 703, 848, 993
BspMAI	CTGCAG	1 cut(s)	1057
BspPI	GGATC	1 cut(s)	869
BspQI	GCTCTTC	1 cut(s)	926
BspT107I	GGYRCC	2 cut(s)	137, 701
BsrI	ACTGG	2 cut(s)	440, 461
BssECI	CCNNGG	4 cut(s)	487, 571, 681, 682
BssMI	GATC	3 cut(s)	805, 861, 865
BssNI	GRCGYC	1 cut(s)	138
Bst2UI	CCWGG	3 cut(s)	683, 1064, 1075
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	3 cut(s)	464, 926, 1032
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstBAI	YACGTR	1 cut(s)	1020
BstC8I	GCNNGC	2 cut(s)	882, 1053
BstDEI	CTNAG	3 cut(s)	13, 243, 716
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	483
BstFNI	CGCG	4 cut(s)	178, 180, 195, 1152
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	4 cut(s)	140, 180, 601, 1152
BstKTI	GATC	3 cut(s)	808, 864, 868
BstMBI	GATC	3 cut(s)	805, 861, 865
BstMCI	CGRYCG	2 cut(s)	193, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 301, 824
BstNI	CCWGG	3 cut(s)	683, 1064, 1075
BstSCI	CCNGG	4 cut(s)	570, 681, 1062, 1073
BstSFI	CTRYAG	2 cut(s)	1053, 1091
BstSLI	GKGCMC	2 cut(s)	107, 850
BstUI	CGCG	4 cut(s)	178, 180, 195, 1152
BstV1I	GCAGC	1 cut(s)	802
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
Bsu15I	ATCGAT	1 cut(s)	864
BsuI	GTATCC	1 cut(s)	1032
BsuRI	GGCC	6 cut(s)	105, 224, 792, 848, 884, 1051
BsuTUI	ATCGAT	1 cut(s)	864
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	483
Cac8I	GCNNGC	2 cut(s)	882, 1053
CciI	TCATGA	1 cut(s)	765
CfoI	GCGC	4 cut(s)	140, 180, 601, 1152
Cfr13I	GGNCC	6 cut(s)	103, 104, 200, 214, 846, 847
ClaI	ATCGAT	1 cut(s)	864
CviAII	CATG	9 cut(s)	211, 373, 528, 757, 766, 877, 968, 988, 1119
DdeI	CTNAG	3 cut(s)	13, 243, 716
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	3 cut(s)	807, 863, 867
DpnII	GATC	3 cut(s)	805, 861, 865
DraIII	CACNNNGTG	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	3 cut(s)	464, 926, 1032
EarI	CTCTTC	3 cut(s)	464, 926, 1032
EciI	GGCGGA	1 cut(s)	221
Eco147I	AGGCCT	1 cut(s)	1051
Eco24I	GRGCYC	2 cut(s)	107, 850
Eco32I	GATATC	1 cut(s)	504
Eco47I	GGWCC	2 cut(s)	200, 214
EcoO109I	RGGNCCY	2 cut(s)	104, 847
EcoRI	GAATTC	1 cut(s)	579
EcoRII	CCWGG	3 cut(s)	681, 1062, 1073
EcoRV	GATATC	1 cut(s)	504
EcoT38I	GRGCYC	2 cut(s)	107, 850
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
FaeI	CATG	9 cut(s)	214, 376, 531, 760, 769, 880, 971, 991, 1122
FaqI	GGGAC	2 cut(s)	213, 967
FatI	CATG	9 cut(s)	210, 372, 527, 756, 765, 876, 967, 987, 1118
FauNDI	CATATG	1 cut(s)	1146
Fnu4HI	GCNGC	2 cut(s)	790, 816
FokI	GGATG	1 cut(s)	490
FriOI	GRGCYC	2 cut(s)	107, 850
Fsp4HI	GCNGC	2 cut(s)	790, 816
FspBI	CTAG	2 cut(s)	900, 957
GlaI	GCGC	4 cut(s)	139, 179, 600, 1151
GluI	GCNGC	2 cut(s)	790, 816
GsaI	CCCAGC	1 cut(s)	847
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	6 cut(s)	105, 224, 792, 848, 884, 1051
HapII	CCGG	1 cut(s)	571
HhaI	GCGC	4 cut(s)	140, 180, 601, 1152
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	9 cut(s)	214, 376, 531, 760, 769, 880, 971, 991, 1122
Hin6I	GCGC	4 cut(s)	138, 178, 599, 1150
HinP1I	GCGC	4 cut(s)	138, 178, 599, 1150
HindIII	AAGCTT	1 cut(s)	1124
HpaII	CCGG	1 cut(s)	571
Hpy166II	GTNNAC	3 cut(s)	634, 668, 689
Hpy188I	TCNGA	7 cut(s)	68, 190, 244, 805, 870, 1007, 1116
Hpy188III	TCNNGA	3 cut(s)	584, 724, 766
Hpy8I	GTNNAC	3 cut(s)	634, 668, 689
HpyAV	CCTTC	3 cut(s)	417, 860, 1072
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	2 cut(s)	167, 1019
HpyCH4V	TGCA	3 cut(s)	818, 880, 1055
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 301, 824
HpyF3I	CTNAG	3 cut(s)	13, 243, 716
HpySE526I	ACGT	2 cut(s)	167, 1019
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	9 cut(s)	214, 376, 531, 760, 769, 880, 971, 991, 1122
HspAI	GCGC	4 cut(s)	138, 178, 599, 1150
KasI	GGCGCC	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	805, 861, 865
LguI	GCTCTTC	1 cut(s)	926
LmnI	GCTCC	1 cut(s)	923
Lsp1109I	GCAGC	1 cut(s)	802
LweI	GCATC	1 cut(s)	1142
MaeI	CTAG	2 cut(s)	900, 957
MaeII	ACGT	2 cut(s)	167, 1019
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	3 cut(s)	807, 863, 867
MboI	GATC	3 cut(s)	805, 861, 865
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	2 cut(s)	107, 850
MluCI	AATT	8 cut(s)	32, 80, 247, 290, 444, 579, 627, 1105
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	4 cut(s)	191, 249, 327, 898
MmeI	TCCRAC	4 cut(s)	43, 213, 267, 450
MnlI	CCTC	6 cut(s)	55, 190, 465, 563, 1035, 1041
MseI	TTAA	1 cut(s)	1101
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	1 cut(s)	571
MspR9I	CCNGG	4 cut(s)	572, 683, 1064, 1075
MvaI	CCWGG	3 cut(s)	683, 1064, 1075
MvnI	CGCG	4 cut(s)	178, 180, 195, 1152
MwoI	GCNNNNNNNGC	3 cut(s)	177, 301, 824
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	572
NdeI	CATATG	1 cut(s)	1146
NdeII	GATC	3 cut(s)	805, 861, 865
NlaIII	CATG	9 cut(s)	214, 376, 531, 760, 769, 880, 971, 991, 1122
NlaIV	GGNNCC	8 cut(s)	105, 106, 139, 201, 608, 703, 848, 993
NmuCI	GTSAC	1 cut(s)	269
PagI	TCATGA	1 cut(s)	765
PasI	CCCWGGG	1 cut(s)	682
PceI	AGGCCT	1 cut(s)	1051
PciSI	GCTCTTC	1 cut(s)	926
PfeI	GAWTC	6 cut(s)	69, 298, 329, 524, 912, 1067
PflMI	CCANNNNNTGG	1 cut(s)	843
PfoI	TCCNGGA	2 cut(s)	1062, 1073
PkrI	GCNGC	2 cut(s)	791, 817
Ple19I	CGATCG	1 cut(s)	868
PleI	GAGTC	4 cut(s)	190, 249, 326, 898
PluTI	GGCGCC	1 cut(s)	141
PpsI	GAGTC	4 cut(s)	190, 249, 326, 898
Ppu21I	YACGTR	1 cut(s)	1020
Psp6I	CCWGG	3 cut(s)	681, 1062, 1073
PspFI	CCCAGC	1 cut(s)	843
PspGI	CCWGG	3 cut(s)	681, 1062, 1073
PspN4I	GGNNCC	8 cut(s)	105, 106, 139, 201, 608, 703, 848, 993
PspOMI	GGGCCC	2 cut(s)	103, 846
PspPI	GGNCC	6 cut(s)	103, 104, 200, 214, 846, 847
PstI	CTGCAG	1 cut(s)	1057
PsuI	RGATCY	1 cut(s)	805
PvuI	CGATCG	1 cut(s)	868
RseI	CAYNNNNRTG	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	926
SaqAI	TTAA	1 cut(s)	1101
SatI	GCNGC	2 cut(s)	790, 816
Sau3AI	GATC	3 cut(s)	805, 861, 865
Sau96I	GGNCC	6 cut(s)	103, 104, 200, 214, 846, 847
SchI	GAGTC	4 cut(s)	191, 249, 327, 898
ScrFI	CCNGG	4 cut(s)	572, 683, 1064, 1075
SduI	GDGCHC	2 cut(s)	107, 850
SfaNI	GCATC	1 cut(s)	1142
SfcI	CTRYAG	2 cut(s)	1053, 1091
SfoI	GGCGCC	1 cut(s)	139
SinI	GGWCC	2 cut(s)	200, 214
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SpeI	ACTAGT	1 cut(s)	956
Sse9I	AATT	8 cut(s)	32, 80, 247, 290, 444, 579, 627, 1105
SseBI	AGGCCT	1 cut(s)	1051
SsiI	CCGC	3 cut(s)	193, 232, 789
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	2 cut(s)	900, 957
StuI	AGGCCT	1 cut(s)	1051
StyD4I	CCNGG	4 cut(s)	570, 681, 1062, 1073
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	2 cut(s)	170, 1022
TaqI	TCGA	2 cut(s)	864, 972
TasI	AATT	8 cut(s)	32, 80, 247, 290, 444, 579, 627, 1105
TauI	GCSGC	1 cut(s)	792
TfiI	GAWTC	6 cut(s)	69, 298, 329, 524, 912, 1067
Tru1I	TTAA	1 cut(s)	1101
Tru9I	TTAA	1 cut(s)	1101
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	815
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	5 cut(s)	349, 552, 745, 956, 1133
TspGWI	ACGGA	2 cut(s)	411, 685
Van91I	CCANNNNNTGG	1 cut(s)	843
VpaK11BI	GGWCC	2 cut(s)	200, 214
XapI	RAATTY	3 cut(s)	32, 80, 579
XspI	CTAG	2 cut(s)	900, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.