Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Forward (+)

85293206 .. 85293880

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G049220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAATCAGGATAACTATTTTGAGGAAGCTTTGAAGATGAGAAATTTACTCGAAGAATTCCACCGTGATCATGGTATCCGTCGTCCTACAATTCTTGGTGTCAGGGAACATGTCTTTACGGGAAGTGTTTCTTCTTTAGCATCATTCATGTCCAATCAGGAAACAAGCTTTGTAACTCTAGCTCAGCGGGTTCTTGCCAATCCTTTGAAGGTCCGTATGCATTATGGTCATCCTGATGTGTTTGATAGAGTTTTCCACATAACACGGGGTGGTATTAGCAAGGCTTCTCGAGTGATTAACATCAGTGAAGACATCTTTGCAGGTATGGTTCTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0001558 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009846 GO:0009856 GO:0009987 GO:0010769 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033037 GO:0034293 GO:0040007 GO:0040008 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048589 GO:0048609 GO:0048638 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051239 GO:0051321 GO:0051510 GO:0051641 GO:0051704 GO:0052386 GO:0052543 GO:0052545 GO:0055047 GO:0060284 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080092 GO:0140014 GO:1903046 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

112

Amino Acids

12.82

Weight (kDa)

8.24

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	1 - 109	5.1e-49	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	311
AciI	CCGC	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	43, 56
AdeI	CACNNNGTG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	34, 208
AluBI	AGCT	3 cut(s)	29, 168, 182
AluI	AGCT	3 cut(s)	29, 168, 182
Ama87I	CYCGRG	1 cut(s)	288
ApoI	RAATTY	2 cut(s)	43, 56
Asp700I	GAANNNNTTC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	67
BfaI	CTAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	86
BlpI	GCTNAGC	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	211
BmsI	GCATC	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	299
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	67
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	311
BssMI	GATC	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	310
BveI	ACCTGC	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	211
CviAII	CATG	3 cut(s)	71, 110, 148
CviJI	RGCY	4 cut(s)	29, 168, 182, 284
CviKI_1	RGCY	4 cut(s)	29, 168, 182, 284
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
DraIII	CACNNNGTG	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	222
FaeI	CATG	3 cut(s)	74, 113, 151
FaiI	YATR	7 cut(s)	72, 111, 149, 218, 225, 260, 326
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
FatI	CATG	3 cut(s)	70, 109, 147
FauI	CCCGC	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	67
FokI	GGATG	1 cut(s)	216
FspBI	CTAG	1 cut(s)	179
Hin1II	CATG	3 cut(s)	74, 113, 151
HindIII	AAGCTT	2 cut(s)	27, 166
HinfI	GANTC	1 cut(s)	4
Hpy188III	TCNNGA	4 cut(s)	8, 158, 233, 288
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	220, 320
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	74, 113, 151
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	4 cut(s)	88, 143, 246, 306
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	4 cut(s)	46, 65, 123, 320
MluCI	AATT	4 cut(s)	43, 56, 90, 334
MnlI	CCTC	1 cut(s)	16
Mph1103I	ATGCAT	1 cut(s)	222
MroXI	GAANNNNTTC	1 cut(s)	127
MseI	TTAA	2 cut(s)	297, 333
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	187
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	3 cut(s)	74, 113, 151
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	1 cut(s)	113
PaeR7I	CTCGAG	1 cut(s)	288
PciI	ACATGT	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	4
PscI	ACATGT	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	297, 333
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	1 cut(s)	211
SetI	ASST	5 cut(s)	31, 170, 184, 213, 325
SfaNI	GCATC	1 cut(s)	149
Sfr274I	CTCGAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	211
SlaI	CTCGAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	288
SmoI	CTYRAG	1 cut(s)	288
Sse9I	AATT	4 cut(s)	43, 56, 90, 334
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	51, 289
TasI	AATT	4 cut(s)	43, 56, 90, 334
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	297, 333
Tru9I	TTAA	2 cut(s)	297, 333
TscAI	CASTG	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	17, 136
TspGWI	ACGGA	2 cut(s)	68, 203
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	2 cut(s)	43, 56
XceI	RCATGY	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.